Clone Sequence Records
BO13678.3prime Sequence
509 bp (508 high quality bases) assembled on 2006-05-08
> BO13678.3prime
ATGGTCTAGAAAGCTTGCCCAGATTTCCCGACAGCGACCACGATGGTCGG
GCAGATAGCCGGGCTGGCAGGGGAAGTCGATCATGGCCACCATCATGGTC
TTCTCGGTGGTGGTTTGGCCGGCGACCGGAGGCTCCGTGTTTGCCTCGTG
GACGGCCAGCACCTGTTGCTCGTCGAGATCGACACACTGGTTGGGCTGAA
CGGGACTGGTCTGGTTATTGGGACAGGTGATCCTGTGCAGGCAGTATTTC
ACACACGGTTTTGGAGCCTGAACATTCGCCAGCTTCTTTTTGCACTTGAA
CTGCGCCACACAGTCCTTCGGGATTTCGGGAATATTGTTGTTGATGTAGA
AGGGTCGGCGGGGCTCCTCTGTGGTCGTCGTAGTTGTGCTGGTTGTTGTG
GAGGTGGACTCCCTGTGGAAAATTCTGCCCAGAATTCCGCCCTGGACGGC
GGCTACCAGCAGAGCGGCCAATAAGGCCACAAGAAACCGCTTCATGTCGA
CTGATAACT
BO13678.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:09:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17244-PA | 480 | CG17244-RA | 1..477 | 495..19 | 2385 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 12:32:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17244-RB | 895 | CG17244-RB | 39..515 | 495..19 | 2385 | 100 | Minus |
CG17244-RA | 633 | CG17244-RA | 39..515 | 495..19 | 2385 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 12:32:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 22977308..22977784 | 495..19 | 2385 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-08 12:32:41 has no hits.
BO13678.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:10:02 Download gff for
BO13678.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17244-PA | 1..480 | 16..495 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:58:25 Download gff for
BO13678.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17244-PA | 1..480 | 16..495 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:38:23 Download gff for
BO13678.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17244-RA | 31..515 | 19..502 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 15:22:10 Download gff for
BO13678.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17244-RA | 31..515 | 19..502 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 15:22:10 Download gff for
BO13678.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 22977300..22977784 | 19..502 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:38:23 Download gff for
BO13678.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 18803022..18803506 | 19..502 | 99 | | Minus |
BO13678.5prime Sequence
509 bp (508 high quality bases) assembled on 2006-05-08
> BO13678.5prime
GAAGTTATCAGTCGACATGAAGCGGTTTCTTGTGGCCTTATTGGCCGCTC
TGCTGGTAGCCGCCGTCCAGGGCGGAATTCTGGGCAGAATTTTCCACAGG
GAGTCCACCTCCACAACAACCAGCACAACTACGACGACCACAGAGGAGCC
CCGCCGACCCTTCTACATCAACAACAATATTCCCGAAATCCCGAAGGACT
GTGTGGCGCAGTTCAAGTGCAAAAAGAAGCTGGCGAATGTTCAGGCTCCA
AAACCGTGTGTGAAATACTGCCTGCACAGGATCACCTGTCCCAATAACCA
GACCAGTCCCGTTCAGCCCAACCAGTGTGTCGATCTCGACGAGCAACAGG
TGCTGGCCGTCCACGAGGCAAACACGGAGCCTCCGGTCGCCGGCCAAACC
ACCACCGAGAAGACCATGATGGTGGCCATGATCGACTTCCCCTGCCAGCC
CGGCTATCTGCCCGACCATCGTGGTCGCTGTCGGGAAATCTGGGCAAGCT
TTCTAGACC
BO13678.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:09:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17244-PA | 480 | CG17244-RA | 1..477 | 17..493 | 2385 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 08:41:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17244-RB | 895 | CG17244-RB | 39..515 | 17..493 | 2385 | 100 | Plus |
CG17244-RA | 633 | CG17244-RA | 39..515 | 17..493 | 2385 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 08:41:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 22977308..22977784 | 17..493 | 2385 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-09 08:41:09 has no hits.
BO13678.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:10:03 Download gff for
BO13678.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17244-PA | 1..480 | 17..496 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:58:27 Download gff for
BO13678.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17244-PA | 1..480 | 17..496 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 18:12:24 Download gff for
BO13678.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17244-RA | 31..515 | 10..493 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 11:42:32 Download gff for
BO13678.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17244-RA | 31..515 | 10..493 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 11:42:32 Download gff for
BO13678.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 22977300..22977784 | 10..493 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 18:12:24 Download gff for
BO13678.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 18803022..18803506 | 10..493 | 99 | | Plus |
BO13678.complete Sequence
511 bp assembled on 2006-10-11
GenBank Submission: FJ632902
> BO13678.complete
GAAGTTATCAGTCGACATGAAGCGGTTTCTTGTGGCCTTATTGGCCGCTC
TGCTGGTAGCCGCCGTCCAGGGCGGAATTCTGGGCAGAATTTTCCACAGG
GAGTCCACCTCCACAACAACCAGCACAACTACGACGACCACAGAGGAGCC
CCGCCGACCCTTCTACATCAACAACAATATTCCCGAAATCCCGAAGGACT
GTGTGGCGCAGTTCAAGTGCAAAAAGAAGCTGGCGAATGTTCAGGCTCCA
AAACCGTGTGTGAAATACTGCCTGCACAGGATCACCTGTCCCAATAACCA
GACCAGTCCCGTTCAGCCCAACCAGTGTGTCGATCTCGACGAGCAACAGG
TGCTGGCCGTCCACGAGGCAAACACGGAGCCTCCGGTCGCCGGCCAAACC
ACCACCGAGAAGACCATGATGGTGGCCATGATCGACTTCCCCTGCCAGCC
CGGCTATCTGCCCGACCATCGTGGTCGCTGTCGGGAAATCTGGGCAAGCT
TTCTAGACCAT
BO13678.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:51:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17244-RB | 480 | CG17244-PB | 1..477 | 17..493 | 2385 | 100 | Plus |
CG17244-RA | 480 | CG17244-PA | 1..477 | 17..493 | 2385 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:51:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17244-RB | 895 | CG17244-RB | 39..515 | 17..493 | 2385 | 100 | Plus |
CG17244-RA | 633 | CG17244-RA | 39..515 | 17..493 | 2385 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:51:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 22977308..22977784 | 17..493 | 2385 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 01:51:47 has no hits.
BO13678.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:45:23 Download gff for
BO13678.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17244-RA | 1..480 | 17..496 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:59:22 Download gff for
BO13678.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17244-RA | 30..514 | 10..493 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:03:40 Download gff for
BO13678.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17244-RA | 39..515 | 17..495 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:45:23 Download gff for
BO13678.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17244-RA | 30..514 | 10..493 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:33:11 Download gff for
BO13678.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17244-RA | 39..515 | 17..495 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:33:11 Download gff for
BO13678.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 22977308..22977784 | 17..495 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:03:40 Download gff for
BO13678.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 18803030..18803506 | 17..495 | 99 | | Plus |
BO13678.pep Sequence
Translation from 16 to 511
> BO13678.pep
MKRFLVALLAALLVAAVQGGILGRIFHRESTSTTTSTTTTTTEEPRRPFY
INNNIPEIPKDCVAQFKCKKKLANVQAPKPCVKYCLHRITCPNNQTSPVQ
PNQCVDLDEQQVLAVHEANTEPPVAGQTTTEKTMMVAMIDFPCQPGYLPD
HRGRCREIWASFLDH
BO13678.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:05:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17244-PB | 159 | CG17244-PB | 1..159 | 1..159 | 856 | 100 | Plus |
CG17244-PA | 159 | CG17244-PA | 1..159 | 1..159 | 856 | 100 | Plus |