Clone BO13678 Report

Search the DGRC for BO13678

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:136
Well:78
Vector:pDNR-Dual
Associated Gene/TranscriptCG17244-RA
Protein status:BO13678.pep: validated full length
Sequenced Size:511

Clone Sequence Records

BO13678.3prime Sequence

509 bp (508 high quality bases) assembled on 2006-05-08

> BO13678.3prime
ATGGTCTAGAAAGCTTGCCCAGATTTCCCGACAGCGACCACGATGGTCGG
GCAGATAGCCGGGCTGGCAGGGGAAGTCGATCATGGCCACCATCATGGTC
TTCTCGGTGGTGGTTTGGCCGGCGACCGGAGGCTCCGTGTTTGCCTCGTG
GACGGCCAGCACCTGTTGCTCGTCGAGATCGACACACTGGTTGGGCTGAA
CGGGACTGGTCTGGTTATTGGGACAGGTGATCCTGTGCAGGCAGTATTTC
ACACACGGTTTTGGAGCCTGAACATTCGCCAGCTTCTTTTTGCACTTGAA
CTGCGCCACACAGTCCTTCGGGATTTCGGGAATATTGTTGTTGATGTAGA
AGGGTCGGCGGGGCTCCTCTGTGGTCGTCGTAGTTGTGCTGGTTGTTGTG
GAGGTGGACTCCCTGTGGAAAATTCTGCCCAGAATTCCGCCCTGGACGGC
GGCTACCAGCAGAGCGGCCAATAAGGCCACAAGAAACCGCTTCATGTCGA
CTGATAACT

BO13678.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:09:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG17244-PA 480 CG17244-RA 1..477 495..19 2385 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 12:32:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG17244-RB 895 CG17244-RB 39..515 495..19 2385 100 Minus
CG17244-RA 633 CG17244-RA 39..515 495..19 2385 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 12:32:38
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 22977308..22977784 495..19 2385 100 Minus
Blast to na_te.dros performed on 2015-02-08 12:32:41 has no hits.

BO13678.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:10:02 Download gff for BO13678.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17244-PA 1..480 16..495 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:58:25 Download gff for BO13678.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17244-PA 1..480 16..495 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:38:23 Download gff for BO13678.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17244-RA 31..515 19..502 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 15:22:10 Download gff for BO13678.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17244-RA 31..515 19..502 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 15:22:10 Download gff for BO13678.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 22977300..22977784 19..502 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:38:23 Download gff for BO13678.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 18803022..18803506 19..502 99   Minus

BO13678.5prime Sequence

509 bp (508 high quality bases) assembled on 2006-05-08

> BO13678.5prime
GAAGTTATCAGTCGACATGAAGCGGTTTCTTGTGGCCTTATTGGCCGCTC
TGCTGGTAGCCGCCGTCCAGGGCGGAATTCTGGGCAGAATTTTCCACAGG
GAGTCCACCTCCACAACAACCAGCACAACTACGACGACCACAGAGGAGCC
CCGCCGACCCTTCTACATCAACAACAATATTCCCGAAATCCCGAAGGACT
GTGTGGCGCAGTTCAAGTGCAAAAAGAAGCTGGCGAATGTTCAGGCTCCA
AAACCGTGTGTGAAATACTGCCTGCACAGGATCACCTGTCCCAATAACCA
GACCAGTCCCGTTCAGCCCAACCAGTGTGTCGATCTCGACGAGCAACAGG
TGCTGGCCGTCCACGAGGCAAACACGGAGCCTCCGGTCGCCGGCCAAACC
ACCACCGAGAAGACCATGATGGTGGCCATGATCGACTTCCCCTGCCAGCC
CGGCTATCTGCCCGACCATCGTGGTCGCTGTCGGGAAATCTGGGCAAGCT
TTCTAGACC

BO13678.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:09:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG17244-PA 480 CG17244-RA 1..477 17..493 2385 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 08:41:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG17244-RB 895 CG17244-RB 39..515 17..493 2385 100 Plus
CG17244-RA 633 CG17244-RA 39..515 17..493 2385 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 08:41:05
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 22977308..22977784 17..493 2385 100 Plus
Blast to na_te.dros performed on 2015-02-09 08:41:09 has no hits.

BO13678.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:10:03 Download gff for BO13678.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17244-PA 1..480 17..496 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:58:27 Download gff for BO13678.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17244-PA 1..480 17..496 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 18:12:24 Download gff for BO13678.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17244-RA 31..515 10..493 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 11:42:32 Download gff for BO13678.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17244-RA 31..515 10..493 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 11:42:32 Download gff for BO13678.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 22977300..22977784 10..493 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 18:12:24 Download gff for BO13678.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 18803022..18803506 10..493 99   Plus

BO13678.complete Sequence

511 bp assembled on 2006-10-11

GenBank Submission: FJ632902

> BO13678.complete
GAAGTTATCAGTCGACATGAAGCGGTTTCTTGTGGCCTTATTGGCCGCTC
TGCTGGTAGCCGCCGTCCAGGGCGGAATTCTGGGCAGAATTTTCCACAGG
GAGTCCACCTCCACAACAACCAGCACAACTACGACGACCACAGAGGAGCC
CCGCCGACCCTTCTACATCAACAACAATATTCCCGAAATCCCGAAGGACT
GTGTGGCGCAGTTCAAGTGCAAAAAGAAGCTGGCGAATGTTCAGGCTCCA
AAACCGTGTGTGAAATACTGCCTGCACAGGATCACCTGTCCCAATAACCA
GACCAGTCCCGTTCAGCCCAACCAGTGTGTCGATCTCGACGAGCAACAGG
TGCTGGCCGTCCACGAGGCAAACACGGAGCCTCCGGTCGCCGGCCAAACC
ACCACCGAGAAGACCATGATGGTGGCCATGATCGACTTCCCCTGCCAGCC
CGGCTATCTGCCCGACCATCGTGGTCGCTGTCGGGAAATCTGGGCAAGCT
TTCTAGACCAT

BO13678.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:51:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG17244-RB 480 CG17244-PB 1..477 17..493 2385 100 Plus
CG17244-RA 480 CG17244-PA 1..477 17..493 2385 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:51:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG17244-RB 895 CG17244-RB 39..515 17..493 2385 100 Plus
CG17244-RA 633 CG17244-RA 39..515 17..493 2385 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:51:46
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 22977308..22977784 17..493 2385 100 Plus
Blast to na_te.dros performed on 2014-11-27 01:51:47 has no hits.

BO13678.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:45:23 Download gff for BO13678.complete
Subject Subject Range Query Range Percent Splice Strand
CG17244-RA 1..480 17..496 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:59:22 Download gff for BO13678.complete
Subject Subject Range Query Range Percent Splice Strand
CG17244-RA 30..514 10..493 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:03:40 Download gff for BO13678.complete
Subject Subject Range Query Range Percent Splice Strand
CG17244-RA 39..515 17..495 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:45:23 Download gff for BO13678.complete
Subject Subject Range Query Range Percent Splice Strand
CG17244-RA 30..514 10..493 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:33:11 Download gff for BO13678.complete
Subject Subject Range Query Range Percent Splice Strand
CG17244-RA 39..515 17..495 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:33:11 Download gff for BO13678.complete
Subject Subject Range Query Range Percent Splice Strand
3R 22977308..22977784 17..495 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:03:40 Download gff for BO13678.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 18803030..18803506 17..495 99   Plus

BO13678.pep Sequence

Translation from 16 to 511

> BO13678.pep
MKRFLVALLAALLVAAVQGGILGRIFHRESTSTTTSTTTTTTEEPRRPFY
INNNIPEIPKDCVAQFKCKKKLANVQAPKPCVKYCLHRITCPNNQTSPVQ
PNQCVDLDEQQVLAVHEANTEPPVAGQTTTEKTMMVAMIDFPCQPGYLPD
HRGRCREIWASFLDH

BO13678.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:05:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG17244-PB 159 CG17244-PB 1..159 1..159 856 100 Plus
CG17244-PA 159 CG17244-PA 1..159 1..159 856 100 Plus