Clone Sequence Records
BO13680.3prime Sequence
591 bp (590 high quality bases) assembled on 2006-05-08
> BO13680.3prime
ATGGTCTAGAAAGCTTGCGTCTCCGCGCAGAGCCTCCAGCTCGTCAGCAG
CCTCTTTCGAAATCCTGTGGTACTTGGCCACCGATGGTCGGTAGTAGTAG
GCCTGGTAATCATTGCGCTCCGACATCTTGCGACGTACTTCGTCCTCAAG
GAGTCGAATCTGGGCTTTTTCGTTCTCCTCGTAGAGATAGTGCAGGGATT
TCTCGTAGTTTTGCTGATCCGAGTTCAAAATGTAGCGGGAAATAAAGCGC
GAGATGGGGTGCTTCTCGTACTCCCAGTGCTTGGGCTCATAGCCCTCGGG
AATCTCGGCGAGCTGCGCGGGTCCCACAAAGATGTTCGCGTAGAGAACCA
ATGCGGTGACTGGGATGACGCCGAGCATTACGTAAAAGTGCAACAGATCC
TTGAACTTGTCCCACTGGAAGCGGGATGGCTTGATGATCATTTGGTGGTG
TCCATGATCGCCTCCCATTCTGCGCAGCTGTTGGTGCAGGGCATTCCGGC
ACGCGGGCTCTTGCAGGACAGCCCGGTAGCTGGCGAACTTCGCCGCCGGC
GACAGCAAACGGCTCCAACCGACCATGTCGACCTGATAACT
BO13680.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:09:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9762-PA | 561 | l(3)neo18-RA | 1..558 | 576..19 | 2790 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:25:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
l(3)neo18-RB | 714 | CG9762-RB | 73..630 | 576..19 | 2790 | 100 | Minus |
l(3)neo18-RA | 888 | CG9762-RA | 184..741 | 576..19 | 2790 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 12:25:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 12138016..12138246 | 262..492 | 1155 | 100 | Plus |
3L | 28110227 | 3L | 12137643..12137779 | 19..155 | 685 | 100 | Plus |
3L | 28110227 | 3L | 12137838..12137946 | 155..263 | 545 | 100 | Plus |
3L | 28110227 | 3L | 12138317..12138401 | 492..576 | 425 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 12:25:53 has no hits.
BO13680.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:10:04 Download gff for
BO13680.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9762-PA | 1..561 | 18..576 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:58:28 Download gff for
BO13680.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9762-PA | 1..561 | 18..576 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 01:14:56 Download gff for
BO13680.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(3)neo18-RA | 184..741 | 19..576 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:10:11 Download gff for
BO13680.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(3)neo18-RA | 184..741 | 19..576 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:10:11 Download gff for
BO13680.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 12137643..12137778 | 19..154 | 100 | <- | Plus |
3L | 12137838..12137944 | 155..261 | 100 | <- | Plus |
3L | 12138016..12138245 | 262..491 | 100 | <- | Plus |
3L | 12138317..12138401 | 492..576 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 01:14:56 Download gff for
BO13680.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 12130938..12131044 | 155..261 | 100 | <- | Plus |
arm_3L | 12130743..12130878 | 19..154 | 100 | <- | Plus |
arm_3L | 12131116..12131345 | 262..491 | 100 | <- | Plus |
arm_3L | 12131417..12131501 | 492..576 | 100 | | Plus |
BO13680.5prime Sequence
591 bp (590 high quality bases) assembled on 2006-05-08
> BO13680.5prime
GAAGTTATCAGGTCGACATGGTCGGTTGGAGCCGTTTGCTGTCGCCGGCG
GCGAAGTTCGCCAGCTACCGGGCTGTCCTGCAAGAGCCCGCGTGCCGGAA
TGCCCTGCACCAACAGCTGCGCAGAATGGGAGGCGATCATGGACACCACC
AAATGATCATCAAGCCATCCCGCTTCCAGTGGGACAAGTTCAAGGATCTG
TTGCACTTTTACGTAATGCTCGGCGTCATCCCAGTCACCGCATTGGTTCT
CTACGCGAACATCTTTGTGGGACCCGCGCAGCTCGCCGAGATTCCCGAGG
GCTATGAGCCCAAGCACTGGGAGTACGAGAAGCACCCCATCTCGCGCTTT
ATTTCCCGCTACATTTTGAACTCGGATCAGCAAAACTACGAGAAATCCCT
GCACTATCTCTACGAGGAGAACGAAAAAGCCCAGATTCGACTCCTTGAGG
ACGAAGTACGTCGCAAGATGTCGGAGCGCAATGATTACCAGGCCTACTAC
TACCGACCATCGGTGGCCAAGTACCACAGGATTTCGAAAGAGGCTGCTGA
CGAGCTGGAGGCTCTGCGCGGAGACGCAAGCTTTCTAGACC
BO13680.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:09:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9762-PA | 561 | l(3)neo18-RA | 1..558 | 18..575 | 2790 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:07:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
l(3)neo18-RB | 714 | CG9762-RB | 73..630 | 18..575 | 2790 | 100 | Plus |
l(3)neo18-RA | 888 | CG9762-RA | 184..741 | 18..575 | 2790 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:07:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 12138016..12138246 | 332..102 | 1155 | 100 | Minus |
3L | 28110227 | 3L | 12137643..12137779 | 575..439 | 685 | 100 | Minus |
3L | 28110227 | 3L | 12137838..12137946 | 439..331 | 545 | 100 | Minus |
3L | 28110227 | 3L | 12138317..12138401 | 102..18 | 425 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 23:07:49 has no hits.
BO13680.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:10:05 Download gff for
BO13680.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9762-PA | 1..561 | 18..576 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:58:30 Download gff for
BO13680.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9762-PA | 1..561 | 18..576 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 19:40:43 Download gff for
BO13680.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(3)neo18-RA | 184..741 | 18..575 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:54:07 Download gff for
BO13680.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(3)neo18-RA | 184..741 | 18..575 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:54:07 Download gff for
BO13680.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 12137643..12137778 | 440..575 | 100 | <- | Minus |
3L | 12137838..12137944 | 333..439 | 100 | <- | Minus |
3L | 12138016..12138245 | 103..332 | 100 | <- | Minus |
3L | 12138317..12138401 | 18..102 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 19:40:43 Download gff for
BO13680.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 12130743..12130878 | 440..575 | 100 | <- | Minus |
arm_3L | 12130938..12131044 | 333..439 | 100 | <- | Minus |
arm_3L | 12131116..12131345 | 103..332 | 100 | <- | Minus |
arm_3L | 12131417..12131501 | 18..102 | 100 | | Minus |
BO13680.complete Sequence
593 bp assembled on 2011-06-28
GenBank Submission: KX798970
> BO13680.complete
GAAGTTATCAGGTCGACATGGTCGGTTGGAGCCGTTTGCTGTCGCCGGCG
GCGAAGTTCGCCAGCTACCGGGCTGTCCTGCAAGAGCCCGCGTGCCGGAA
TGCCCTGCACCAACAGCTGCGCAGAATGGGAGGCGATCATGGACACCACC
AAATGATCATCAAGCCATCCCGCTTCCAGTGGGACAAGTTCAAGGATCTG
TTGCACTTTTACGTAATGCTCGGCGTCATCCCAGTCACCGCATTGGTTCT
CTACGCGAACATCTTTGTGGGACCCGCGCAGCTCGCCGAGATTCCCGAGG
GCTATGAGCCCAAGCACTGGGAGTACGAGAAGCACCCCATCTCGCGCTTT
ATTTCCCGCTACATTTTGAACTCGGATCAGCAAAACTACGAGAAATCCCT
GCACTATCTCTACGAGGAGAACGAAAAAGCCCAGATTCGACTCCTTGAGG
ACGAAGTACGTCGCAAGATGTCGGAGCGCAATGATTACCAGGCCTACTAC
TACCGACCATCGGTGGCCAAGTACCACAGGATTTCGAAAGAGGCTGCTGA
CGAGCTGGAGGCTCTGCGCGGAGACGCAAGCTTTCTAGACCAT
BO13680.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:11:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
l(3)neo18-RB | 561 | CG9762-PB | 1..558 | 18..575 | 2790 | 100 | Plus |
l(3)neo18-RA | 561 | CG9762-PA | 1..558 | 18..575 | 2790 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:11:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
l(3)neo18-RB | 714 | CG9762-RB | 73..630 | 18..575 | 2790 | 100 | Plus |
l(3)neo18-RA | 888 | CG9762-RA | 184..741 | 18..575 | 2790 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:11:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 12138016..12138246 | 332..102 | 1155 | 100 | Minus |
3L | 28110227 | 3L | 12137643..12137779 | 575..439 | 685 | 100 | Minus |
3L | 28110227 | 3L | 12137838..12137946 | 439..331 | 545 | 100 | Minus |
3L | 28110227 | 3L | 12138317..12138401 | 102..18 | 425 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 16:11:46 has no hits.
BO13680.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-06-28 12:16:17 Download gff for
BO13680.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(3)neo18-RA | 183..741 | 17..577 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:54:36 Download gff for
BO13680.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(3)neo18-RA | 183..741 | 17..577 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:13:19 Download gff for
BO13680.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(3)neo18-RA | 183..741 | 17..577 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:13:19 Download gff for
BO13680.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 12137641..12137778 | 440..577 | 98 | <- | Minus |
3L | 12137838..12137944 | 333..439 | 100 | <- | Minus |
3L | 12138016..12138245 | 103..332 | 100 | <- | Minus |
3L | 12138317..12138401 | 17..102 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:54:36 Download gff for
BO13680.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 12130741..12130878 | 440..577 | 98 | <- | Minus |
arm_3L | 12130938..12131044 | 333..439 | 100 | <- | Minus |
arm_3L | 12131116..12131345 | 103..332 | 100 | <- | Minus |
arm_3L | 12131417..12131501 | 17..102 | 98 | | Minus |
BO13680.pep Sequence
Translation from 17 to 593
> BO13680.pep
MVGWSRLLSPAAKFASYRAVLQEPACRNALHQQLRRMGGDHGHHQMIIKP
SRFQWDKFKDLLHFYVMLGVIPVTALVLYANIFVGPAQLAEIPEGYEPKH
WEYEKHPISRFISRYILNSDQQNYEKSLHYLYEENEKAQIRLLEDEVRRK
MSERNDYQAYYYRPSVAKYHRISKEAADELEALRGDASFLDH
BO13680.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:50:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
l(3)neo18-PB | 186 | CG9762-PB | 1..186 | 1..186 | 989 | 100 | Plus |
l(3)neo18-PA | 186 | CG9762-PA | 1..186 | 1..186 | 989 | 100 | Plus |