Clone BO13680 Report

Search the DGRC for BO13680

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:136
Well:80
Vector:pDNR-Dual
Associated Gene/Transcriptl(3)neo18-RA
Protein status:BO13680.pep: Imported from assembly
Sequenced Size:593

Clone Sequence Records

BO13680.3prime Sequence

591 bp (590 high quality bases) assembled on 2006-05-08

> BO13680.3prime
ATGGTCTAGAAAGCTTGCGTCTCCGCGCAGAGCCTCCAGCTCGTCAGCAG
CCTCTTTCGAAATCCTGTGGTACTTGGCCACCGATGGTCGGTAGTAGTAG
GCCTGGTAATCATTGCGCTCCGACATCTTGCGACGTACTTCGTCCTCAAG
GAGTCGAATCTGGGCTTTTTCGTTCTCCTCGTAGAGATAGTGCAGGGATT
TCTCGTAGTTTTGCTGATCCGAGTTCAAAATGTAGCGGGAAATAAAGCGC
GAGATGGGGTGCTTCTCGTACTCCCAGTGCTTGGGCTCATAGCCCTCGGG
AATCTCGGCGAGCTGCGCGGGTCCCACAAAGATGTTCGCGTAGAGAACCA
ATGCGGTGACTGGGATGACGCCGAGCATTACGTAAAAGTGCAACAGATCC
TTGAACTTGTCCCACTGGAAGCGGGATGGCTTGATGATCATTTGGTGGTG
TCCATGATCGCCTCCCATTCTGCGCAGCTGTTGGTGCAGGGCATTCCGGC
ACGCGGGCTCTTGCAGGACAGCCCGGTAGCTGGCGAACTTCGCCGCCGGC
GACAGCAAACGGCTCCAACCGACCATGTCGACCTGATAACT

BO13680.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:09:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG9762-PA 561 l(3)neo18-RA 1..558 576..19 2790 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:25:56
Subject Length Description Subject Range Query Range Score Percent Strand
l(3)neo18-RB 714 CG9762-RB 73..630 576..19 2790 100 Minus
l(3)neo18-RA 888 CG9762-RA 184..741 576..19 2790 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 12:25:50
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 12138016..12138246 262..492 1155 100 Plus
3L 28110227 3L 12137643..12137779 19..155 685 100 Plus
3L 28110227 3L 12137838..12137946 155..263 545 100 Plus
3L 28110227 3L 12138317..12138401 492..576 425 100 Plus
Blast to na_te.dros performed on 2015-02-12 12:25:53 has no hits.

BO13680.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:10:04 Download gff for BO13680.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9762-PA 1..561 18..576 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:58:28 Download gff for BO13680.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9762-PA 1..561 18..576 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 01:14:56 Download gff for BO13680.3prime
Subject Subject Range Query Range Percent Splice Strand
l(3)neo18-RA 184..741 19..576 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:10:11 Download gff for BO13680.3prime
Subject Subject Range Query Range Percent Splice Strand
l(3)neo18-RA 184..741 19..576 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:10:11 Download gff for BO13680.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 12137643..12137778 19..154 100 <- Plus
3L 12137838..12137944 155..261 100 <- Plus
3L 12138016..12138245 262..491 100 <- Plus
3L 12138317..12138401 492..576 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 01:14:56 Download gff for BO13680.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 12130938..12131044 155..261 100 <- Plus
arm_3L 12130743..12130878 19..154 100 <- Plus
arm_3L 12131116..12131345 262..491 100 <- Plus
arm_3L 12131417..12131501 492..576 100   Plus

BO13680.5prime Sequence

591 bp (590 high quality bases) assembled on 2006-05-08

> BO13680.5prime
GAAGTTATCAGGTCGACATGGTCGGTTGGAGCCGTTTGCTGTCGCCGGCG
GCGAAGTTCGCCAGCTACCGGGCTGTCCTGCAAGAGCCCGCGTGCCGGAA
TGCCCTGCACCAACAGCTGCGCAGAATGGGAGGCGATCATGGACACCACC
AAATGATCATCAAGCCATCCCGCTTCCAGTGGGACAAGTTCAAGGATCTG
TTGCACTTTTACGTAATGCTCGGCGTCATCCCAGTCACCGCATTGGTTCT
CTACGCGAACATCTTTGTGGGACCCGCGCAGCTCGCCGAGATTCCCGAGG
GCTATGAGCCCAAGCACTGGGAGTACGAGAAGCACCCCATCTCGCGCTTT
ATTTCCCGCTACATTTTGAACTCGGATCAGCAAAACTACGAGAAATCCCT
GCACTATCTCTACGAGGAGAACGAAAAAGCCCAGATTCGACTCCTTGAGG
ACGAAGTACGTCGCAAGATGTCGGAGCGCAATGATTACCAGGCCTACTAC
TACCGACCATCGGTGGCCAAGTACCACAGGATTTCGAAAGAGGCTGCTGA
CGAGCTGGAGGCTCTGCGCGGAGACGCAAGCTTTCTAGACC

BO13680.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:09:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG9762-PA 561 l(3)neo18-RA 1..558 18..575 2790 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:07:53
Subject Length Description Subject Range Query Range Score Percent Strand
l(3)neo18-RB 714 CG9762-RB 73..630 18..575 2790 100 Plus
l(3)neo18-RA 888 CG9762-RA 184..741 18..575 2790 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:07:45
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 12138016..12138246 332..102 1155 100 Minus
3L 28110227 3L 12137643..12137779 575..439 685 100 Minus
3L 28110227 3L 12137838..12137946 439..331 545 100 Minus
3L 28110227 3L 12138317..12138401 102..18 425 100 Minus
Blast to na_te.dros performed on 2015-02-11 23:07:49 has no hits.

BO13680.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:10:05 Download gff for BO13680.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9762-PA 1..561 18..576 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:58:30 Download gff for BO13680.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9762-PA 1..561 18..576 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 19:40:43 Download gff for BO13680.5prime
Subject Subject Range Query Range Percent Splice Strand
l(3)neo18-RA 184..741 18..575 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:54:07 Download gff for BO13680.5prime
Subject Subject Range Query Range Percent Splice Strand
l(3)neo18-RA 184..741 18..575 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:54:07 Download gff for BO13680.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 12137643..12137778 440..575 100 <- Minus
3L 12137838..12137944 333..439 100 <- Minus
3L 12138016..12138245 103..332 100 <- Minus
3L 12138317..12138401 18..102 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 19:40:43 Download gff for BO13680.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 12130743..12130878 440..575 100 <- Minus
arm_3L 12130938..12131044 333..439 100 <- Minus
arm_3L 12131116..12131345 103..332 100 <- Minus
arm_3L 12131417..12131501 18..102 100   Minus

BO13680.complete Sequence

593 bp assembled on 2011-06-28

GenBank Submission: KX798970

> BO13680.complete
GAAGTTATCAGGTCGACATGGTCGGTTGGAGCCGTTTGCTGTCGCCGGCG
GCGAAGTTCGCCAGCTACCGGGCTGTCCTGCAAGAGCCCGCGTGCCGGAA
TGCCCTGCACCAACAGCTGCGCAGAATGGGAGGCGATCATGGACACCACC
AAATGATCATCAAGCCATCCCGCTTCCAGTGGGACAAGTTCAAGGATCTG
TTGCACTTTTACGTAATGCTCGGCGTCATCCCAGTCACCGCATTGGTTCT
CTACGCGAACATCTTTGTGGGACCCGCGCAGCTCGCCGAGATTCCCGAGG
GCTATGAGCCCAAGCACTGGGAGTACGAGAAGCACCCCATCTCGCGCTTT
ATTTCCCGCTACATTTTGAACTCGGATCAGCAAAACTACGAGAAATCCCT
GCACTATCTCTACGAGGAGAACGAAAAAGCCCAGATTCGACTCCTTGAGG
ACGAAGTACGTCGCAAGATGTCGGAGCGCAATGATTACCAGGCCTACTAC
TACCGACCATCGGTGGCCAAGTACCACAGGATTTCGAAAGAGGCTGCTGA
CGAGCTGGAGGCTCTGCGCGGAGACGCAAGCTTTCTAGACCAT

BO13680.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:11:47
Subject Length Description Subject Range Query Range Score Percent Strand
l(3)neo18-RB 561 CG9762-PB 1..558 18..575 2790 100 Plus
l(3)neo18-RA 561 CG9762-PA 1..558 18..575 2790 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:11:48
Subject Length Description Subject Range Query Range Score Percent Strand
l(3)neo18-RB 714 CG9762-RB 73..630 18..575 2790 100 Plus
l(3)neo18-RA 888 CG9762-RA 184..741 18..575 2790 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:11:45
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 12138016..12138246 332..102 1155 100 Minus
3L 28110227 3L 12137643..12137779 575..439 685 100 Minus
3L 28110227 3L 12137838..12137946 439..331 545 100 Minus
3L 28110227 3L 12138317..12138401 102..18 425 100 Minus
Blast to na_te.dros performed on 2014-11-26 16:11:46 has no hits.

BO13680.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-06-28 12:16:17 Download gff for BO13680.complete
Subject Subject Range Query Range Percent Splice Strand
l(3)neo18-RA 183..741 17..577 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:54:36 Download gff for BO13680.complete
Subject Subject Range Query Range Percent Splice Strand
l(3)neo18-RA 183..741 17..577 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:13:19 Download gff for BO13680.complete
Subject Subject Range Query Range Percent Splice Strand
l(3)neo18-RA 183..741 17..577 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:13:19 Download gff for BO13680.complete
Subject Subject Range Query Range Percent Splice Strand
3L 12137641..12137778 440..577 98 <- Minus
3L 12137838..12137944 333..439 100 <- Minus
3L 12138016..12138245 103..332 100 <- Minus
3L 12138317..12138401 17..102 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:54:36 Download gff for BO13680.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 12130741..12130878 440..577 98 <- Minus
arm_3L 12130938..12131044 333..439 100 <- Minus
arm_3L 12131116..12131345 103..332 100 <- Minus
arm_3L 12131417..12131501 17..102 98   Minus

BO13680.pep Sequence

Translation from 17 to 593

> BO13680.pep
MVGWSRLLSPAAKFASYRAVLQEPACRNALHQQLRRMGGDHGHHQMIIKP
SRFQWDKFKDLLHFYVMLGVIPVTALVLYANIFVGPAQLAEIPEGYEPKH
WEYEKHPISRFISRYILNSDQQNYEKSLHYLYEENEKAQIRLLEDEVRRK
MSERNDYQAYYYRPSVAKYHRISKEAADELEALRGDASFLDH

BO13680.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:50:20
Subject Length Description Subject Range Query Range Score Percent Strand
l(3)neo18-PB 186 CG9762-PB 1..186 1..186 989 100 Plus
l(3)neo18-PA 186 CG9762-PA 1..186 1..186 989 100 Plus