Clone Sequence Records
BO13681.5prime Sequence
344 bp (343 high quality bases) assembled on 2006-05-08
> BO13681.5prime
GAAGTTATCAGTCGACATGTCCAACGTTCCAATTGTAGGCGGGATCAGTC
AGCTGGAGGGGAATGAGAGGAAGGAGGCTCTGGAACTCCTCGATGCCACC
CTCGCACAGTTGGCCAACGGAGATGGACCCAGCTACAAGGCACTTAATGT
AACCTCTGTGACGGGTCAGGTCGTAGCTGGAAGACTCAACACCTACGAGG
TGCAGCTGGACAATGGATCCGAGATAAAACAGGGCACTGTGCAGATCTGG
AGTCGCGCATGGCTAAAGGAGAACGGCACCAACATCAAGATCAAGTTCCC
GGGTGAGGACGAACTGGACCACACCTGGGCAAGCTTTCTAGACC
BO13681.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:09:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8066-PA | 315 | CG8066-RA | 1..312 | 17..328 | 1560 | 100 | Plus |
| CG8050-PA | 381 | Cys-RA | 115..269 | 68..222 | 450 | 91.6 | Plus |
| CG8050-PA | 381 | Cys-RA | 305..343 | 258..296 | 170 | 97.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:45:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8066-RB | 703 | CG8066-RB | 62..374 | 16..328 | 1565 | 100 | Plus |
| CG8066-RA | 1173 | CG8066-RA | 62..374 | 16..328 | 1565 | 100 | Plus |
| Cys-RA | 484 | CG8050-RA | 118..414 | 35..328 | 860 | 87 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:45:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 14568410..14568599 | 328..139 | 950 | 100 | Minus |
| 3R | 32079331 | 3R | 14568663..14568786 | 139..16 | 620 | 100 | Minus |
| 3R | 32079331 | 3R | 14569173..14569365 | 328..139 | 525 | 86 | Minus |
| 3R | 32079331 | 3R | 14569423..14569527 | 139..35 | 315 | 86.7 | Minus |
Blast to na_te.dros performed on 2015-02-10 20:45:30 has no hits.
BO13681.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:10:06 Download gff for
BO13681.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8066-PA | 1..315 | 17..329 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:58:31 Download gff for
BO13681.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8066-PA | 1..315 | 17..329 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:42:13 Download gff for
BO13681.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8066-RA | 53..384 | 6..337 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:18:15 Download gff for
BO13681.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8066-RA | 53..384 | 6..337 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:18:15 Download gff for
BO13681.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 14568400..14568599 | 139..337 | 98 | <- | Minus |
| 3R | 14568664..14568795 | 6..138 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:42:13 Download gff for
BO13681.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 10394122..10394321 | 139..337 | 98 | <- | Minus |
| arm_3R | 10394386..10394517 | 6..138 | 97 | | Minus |
BO13681.complete Sequence
346 bp assembled on 2006-10-11
GenBank Submission: FJ632903
> BO13681.complete
GAAGTTATCAGTCGACATGTCCAACGTTCCAATTGTAGGCGGGATCAGTC
AGCTGGAGGGGAATGAGAGGAAGGAGGCTCTGGAACTCCTCGATGCCACC
CTCGCACAGTTGGCCAACGGAGATGGACCCAGCTACAAGGCACTTAATGT
AACCTCTGTGACGGGTCAGGTCGTAGCTGGAAGACTCAACACCTACGAGG
TGCAGCTGGACAATGGATCCGAGATAAAACAGGGCACTGTGCAGATCTGG
AGTCGCGCATGGCTAAAGGAGAACGGCACCAACATCAAGATCAAGTTCCC
GGGTGAGGACGAACTGGACCACACCTGGGCAAGCTTTCTAGACCAT
BO13681.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:37:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8066-RB | 315 | CG8066-PB | 1..312 | 17..328 | 1560 | 100 | Plus |
| CG8066-RA | 315 | CG8066-PA | 1..312 | 17..328 | 1560 | 100 | Plus |
| Cys-RA | 381 | CG8050-PA | 82..378 | 35..328 | 835 | 86.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:37:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8066-RB | 703 | CG8066-RB | 62..374 | 16..328 | 1565 | 100 | Plus |
| CG8066-RA | 1173 | CG8066-RA | 62..374 | 16..328 | 1565 | 100 | Plus |
| Cys-RA | 484 | CG8050-RA | 118..414 | 35..328 | 835 | 86.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:37:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 14568410..14568599 | 328..139 | 950 | 100 | Minus |
| 3R | 32079331 | 3R | 14568663..14568786 | 139..16 | 620 | 100 | Minus |
| 3R | 32079331 | 3R | 14569173..14569365 | 328..139 | 525 | 86 | Minus |
| 3R | 32079331 | 3R | 14569423..14569527 | 139..35 | 315 | 86.7 | Minus |
Blast to na_te.dros performed on 2014-11-27 07:37:43 has no hits.
BO13681.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:45:24 Download gff for
BO13681.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8066-RA | 1..315 | 17..329 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:59:24 Download gff for
BO13681.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8066-RA | 16..347 | 6..337 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:19:18 Download gff for
BO13681.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8066-RA | 63..374 | 17..330 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:45:25 Download gff for
BO13681.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8066-RA | 16..347 | 6..337 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:14:12 Download gff for
BO13681.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8066-RA | 63..374 | 17..330 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:14:12 Download gff for
BO13681.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 14568408..14568599 | 139..330 | 98 | <- | Minus |
| 3R | 14568664..14568785 | 17..138 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:19:18 Download gff for
BO13681.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 10394130..10394321 | 139..330 | 98 | <- | Minus |
| arm_3R | 10394386..10394507 | 17..138 | 100 | | Minus |
BO13681.pep Sequence
Translation from 16 to 346
> BO13681.pep
MSNVPIVGGISQLEGNERKEALELLDATLAQLANGDGPSYKALNVTSVTG
QVVAGRLNTYEVQLDNGSEIKQGTVQIWSRAWLKENGTNIKIKFPGEDEL
DHTWASFLDH
BO13681.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:05:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8066-PB | 104 | CG8066-PB | 1..104 | 1..104 | 538 | 100 | Plus |
| CG8066-PA | 104 | CG8066-PA | 1..104 | 1..104 | 538 | 100 | Plus |
| Cys-PA | 126 | CG8050-PA | 27..126 | 6..104 | 414 | 81 | Plus |
| CG31313-PB | 124 | CG31313-PB | 26..124 | 8..104 | 251 | 49.5 | Plus |
| CG31313-PA | 124 | CG31313-PA | 26..124 | 8..104 | 251 | 49.5 | Plus |
