Clone BO13684 Report

Search the DGRC for BO13684

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:136
Well:84
Vector:pDNR-Dual
Associated Gene/TranscriptCG7829-RA
Protein status:BO13684.pep: validated full length
Sequenced Size:793

Clone Sequence Records

BO13684.5prime Sequence

795 bp (794 high quality bases) assembled on 2006-05-08

> BO13684.5prime
GAAGTTATCAGTCGACATGATGTACAAGTTATGGTGGAAATTGCTTCTCC
TCCAGGCTTCTGGGTGTCTATCTCTGGAGAGTCGCCCAGATCCACGCATA
GTCGGTGGCTTCCCAGCCGATATCGCCAACATTCCGTACATAGTGTCCAT
CCAACTGTACGGCATCCACCATTGTGGCGGCTCCATAATAAATAACCACA
CCATCCTAACGGCTGGCCATTGTCTGAACGGAGTGCCACATCGCCTGCTA
AAAGTTAAGGTCGGCGGAACGTCGCGCTACCGAAAAGATGGGGAACTGTT
CTCGGTCGCTGACCTGCAAGTCCACGAGAATTTCAATCCCAAGACCATGG
ACTATGACATCGGTATCATCAGGTTGACCAAAAACCTAACACTATCTAGA
AAGGTAAAGGCCATTCCCATAAACCCAGAGAGAGTAGCCGAAGGCACCTA
TGCCACCATTGCCGGCTGGGGATTTAAGTCCATGAATGGTCCTCCCTCGG
ACAGTCTGAGATATGCCCGAGTGCCGATCGTGAATCAGACCGCCTGCAGG
AACCTACTGGGCAAAACTGTGACGGATCGGATGCTCTGTGCAGGCTACCT
CAAGGGCGGCACGGATGCCTGCCAGATGGACTCCGGTGGACCCTTGTCGG
TGAGGGAGCAGCTGGTGGGCATCGTGTCGTGGGGAGTGGGGTGCGCCCTG
GCGGACAAGCCGGGAGTCTACTCCCGCCTCGATGCACTGCATCCCTGGCT
AGACCAGGTCTTGAATAAGTCAAAGGCAAGCTTTCTAGACCATTC

BO13684.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:09:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG7829-PA 762 CG7829-RA 1..759 17..775 3770 99.8 Plus
CG7829-PB 393 CG7829-RB 1..389 17..405 1920 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:03:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG7829-RA 976 CG7829-RA 37..795 17..775 3780 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:03:35
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 29817340..29817728 405..17 1930 99.7 Minus
3R 32079331 3R 29816919..29817292 775..402 1870 100 Minus
Blast to na_te.dros performed on 2015-02-12 19:03:36 has no hits.

BO13684.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:10:09 Download gff for BO13684.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7829-PA 1..762 17..779 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:58:37 Download gff for BO13684.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7829-PA 1..762 17..779 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:14:33 Download gff for BO13684.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7829-RA 27..798 5..779 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:54:50 Download gff for BO13684.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7829-RA 27..798 5..779 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:54:50 Download gff for BO13684.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 29816916..29817290 404..779 99 <- Minus
3R 29817342..29817726 19..403 99 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:14:33 Download gff for BO13684.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 25642638..25643012 404..779 99 <- Minus
arm_3R 25643064..25643448 19..403 99 -> Minus

BO13684.complete Sequence

793 bp assembled on 2007-10-31

GenBank Submission: FJ632905

> BO13684.complete
GAAGTTATCAGTCGACATGATGTACAAGTTATGGTGGAAATTGCTTCTCC
TCCAGGCTTCTGGGTGTCTATCTCTGGAGAGTCGCCCAGATCCACGCATA
GTCGGTGGCTTCCCAGCCGATATCGCCAACATTCCGTACATAGTGTCCAT
CCAACTGTACGGCATCCACCATTGTGGCGGCTCCATAATAAATAACCACA
CCATCCTAACGGCTGGCCATTGTCTGAACGGAGTGCCACATCGCCTGCTA
AAAGTTAAGGTCGGCGGAACGTCGCGCTACCGAAAAGATGGGGAACTGTT
CTCGGTCGCTGACCTGCAAGTCCACGAGAATTTCAATCCCAAGACCATGG
ACTATGACATCGGTATCATCAGGTTGACCAAAAACCTAACACTATCTAGA
AAGGTAAAGGCCATTCCCATAAACCCAGAGAGAGTAGCCGAAGGCACCTA
TGCCACCATTGCCGGCTGGGGATTTAAGTCCATGAATGGTCCTCCCTCGG
ACAGTCTGAGATATGCCCGAGTGCCGATCGTGAATCAGACCGCCTGCAGG
AACCTACTGGGCAAAACTGTGACGGATCGGATGCTCTGTGCAGGCTACCT
CAAGGGCGGCACGGATGCCTGCCAGATGGACTCCGGTGGACCCTTGTCGG
TGAGGGAGCAGCTGGTGGGCATCGTGTCGTGGGGAGTGGGGTGCGCCCTG
GCGGACAAGCCGGGAGTCTACTCCCGCCTCGATGCACTGCATCCCTGGCT
AGACCAGGTCTTGAATAAGTCAAAGGCAAGCTTTCTAGACCAT

BO13684.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:52:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG7829-RA 762 CG7829-PA 1..759 17..775 3780 99.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:52:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG7829-RA 976 CG7829-RA 37..795 17..775 3780 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:52:40
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 29817340..29817728 405..17 1930 99.7 Minus
3R 32079331 3R 29816919..29817292 775..402 1870 100 Minus
Blast to na_te.dros performed on 2014-11-26 15:52:41 has no hits.

BO13684.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:03:46 Download gff for BO13684.complete
Subject Subject Range Query Range Percent Splice Strand
CG7829-RA 1..762 17..779 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:17:36 Download gff for BO13684.complete
Subject Subject Range Query Range Percent Splice Strand
CG7829-RA 27..798 5..779 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:46:42 Download gff for BO13684.complete
Subject Subject Range Query Range Percent Splice Strand
CG7829-RA 37..795 17..777 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:03:46 Download gff for BO13684.complete
Subject Subject Range Query Range Percent Splice Strand
CG7829-RA 27..798 5..779 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:05:41 Download gff for BO13684.complete
Subject Subject Range Query Range Percent Splice Strand
CG7829-RA 37..795 17..777 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:05:41 Download gff for BO13684.complete
Subject Subject Range Query Range Percent Splice Strand
3R 29816917..29817290 404..777 99 <- Minus
3R 29817342..29817728 17..403 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:46:42 Download gff for BO13684.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 25642639..25643012 404..777 99 <- Minus
arm_3R 25643064..25643450 17..403 99   Minus

BO13684.pep Sequence

Translation from 16 to 793

> BO13684.pep
MMYKLWWKLLLLQASGCLSLESRPDPRIVGGFPADIANIPYIVSIQLYGI
HHCGGSIINNHTILTAGHCLNGVPHRLLKVKVGGTSRYRKDGELFSVADL
QVHENFNPKTMDYDIGIIRLTKNLTLSRKVKAIPINPERVAEGTYATIAG
WGFKSMNGPPSDSLRYARVPIVNQTACRNLLGKTVTDRMLCAGYLKGGTD
ACQMDSGGPLSVREQLVGIVSWGVGCALADKPGVYSRLDALHPWLDQVLN
KSKASFLDH

BO13684.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:40:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG7829-PA 253 CG7829-PA 1..253 1..253 1349 100 Plus
kappaTry-PC 263 CG12388-PC 7..257 9..249 464 39.4 Plus
zetaTry-PA 280 CG12387-PA 29..277 18..249 435 41.4 Plus
Try29F-PD 267 CG9564-PD 23..264 9..248 434 41.5 Plus
Try29F-PC 267 CG9564-PC 23..264 9..248 434 41.5 Plus