Clone Sequence Records
BO13684.5prime Sequence
795 bp (794 high quality bases) assembled on 2006-05-08
> BO13684.5prime
GAAGTTATCAGTCGACATGATGTACAAGTTATGGTGGAAATTGCTTCTCC
TCCAGGCTTCTGGGTGTCTATCTCTGGAGAGTCGCCCAGATCCACGCATA
GTCGGTGGCTTCCCAGCCGATATCGCCAACATTCCGTACATAGTGTCCAT
CCAACTGTACGGCATCCACCATTGTGGCGGCTCCATAATAAATAACCACA
CCATCCTAACGGCTGGCCATTGTCTGAACGGAGTGCCACATCGCCTGCTA
AAAGTTAAGGTCGGCGGAACGTCGCGCTACCGAAAAGATGGGGAACTGTT
CTCGGTCGCTGACCTGCAAGTCCACGAGAATTTCAATCCCAAGACCATGG
ACTATGACATCGGTATCATCAGGTTGACCAAAAACCTAACACTATCTAGA
AAGGTAAAGGCCATTCCCATAAACCCAGAGAGAGTAGCCGAAGGCACCTA
TGCCACCATTGCCGGCTGGGGATTTAAGTCCATGAATGGTCCTCCCTCGG
ACAGTCTGAGATATGCCCGAGTGCCGATCGTGAATCAGACCGCCTGCAGG
AACCTACTGGGCAAAACTGTGACGGATCGGATGCTCTGTGCAGGCTACCT
CAAGGGCGGCACGGATGCCTGCCAGATGGACTCCGGTGGACCCTTGTCGG
TGAGGGAGCAGCTGGTGGGCATCGTGTCGTGGGGAGTGGGGTGCGCCCTG
GCGGACAAGCCGGGAGTCTACTCCCGCCTCGATGCACTGCATCCCTGGCT
AGACCAGGTCTTGAATAAGTCAAAGGCAAGCTTTCTAGACCATTC
BO13684.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:09:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7829-PA | 762 | CG7829-RA | 1..759 | 17..775 | 3770 | 99.8 | Plus |
CG7829-PB | 393 | CG7829-RB | 1..389 | 17..405 | 1920 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:03:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7829-RA | 976 | CG7829-RA | 37..795 | 17..775 | 3780 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:03:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 29817340..29817728 | 405..17 | 1930 | 99.7 | Minus |
3R | 32079331 | 3R | 29816919..29817292 | 775..402 | 1870 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 19:03:36 has no hits.
BO13684.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:10:09 Download gff for
BO13684.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7829-PA | 1..762 | 17..779 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:58:37 Download gff for
BO13684.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7829-PA | 1..762 | 17..779 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:14:33 Download gff for
BO13684.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7829-RA | 27..798 | 5..779 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:54:50 Download gff for
BO13684.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7829-RA | 27..798 | 5..779 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:54:50 Download gff for
BO13684.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 29816916..29817290 | 404..779 | 99 | <- | Minus |
3R | 29817342..29817726 | 19..403 | 99 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:14:33 Download gff for
BO13684.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 25642638..25643012 | 404..779 | 99 | <- | Minus |
arm_3R | 25643064..25643448 | 19..403 | 99 | -> | Minus |
BO13684.complete Sequence
793 bp assembled on 2007-10-31
GenBank Submission: FJ632905
> BO13684.complete
GAAGTTATCAGTCGACATGATGTACAAGTTATGGTGGAAATTGCTTCTCC
TCCAGGCTTCTGGGTGTCTATCTCTGGAGAGTCGCCCAGATCCACGCATA
GTCGGTGGCTTCCCAGCCGATATCGCCAACATTCCGTACATAGTGTCCAT
CCAACTGTACGGCATCCACCATTGTGGCGGCTCCATAATAAATAACCACA
CCATCCTAACGGCTGGCCATTGTCTGAACGGAGTGCCACATCGCCTGCTA
AAAGTTAAGGTCGGCGGAACGTCGCGCTACCGAAAAGATGGGGAACTGTT
CTCGGTCGCTGACCTGCAAGTCCACGAGAATTTCAATCCCAAGACCATGG
ACTATGACATCGGTATCATCAGGTTGACCAAAAACCTAACACTATCTAGA
AAGGTAAAGGCCATTCCCATAAACCCAGAGAGAGTAGCCGAAGGCACCTA
TGCCACCATTGCCGGCTGGGGATTTAAGTCCATGAATGGTCCTCCCTCGG
ACAGTCTGAGATATGCCCGAGTGCCGATCGTGAATCAGACCGCCTGCAGG
AACCTACTGGGCAAAACTGTGACGGATCGGATGCTCTGTGCAGGCTACCT
CAAGGGCGGCACGGATGCCTGCCAGATGGACTCCGGTGGACCCTTGTCGG
TGAGGGAGCAGCTGGTGGGCATCGTGTCGTGGGGAGTGGGGTGCGCCCTG
GCGGACAAGCCGGGAGTCTACTCCCGCCTCGATGCACTGCATCCCTGGCT
AGACCAGGTCTTGAATAAGTCAAAGGCAAGCTTTCTAGACCAT
BO13684.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:52:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7829-RA | 762 | CG7829-PA | 1..759 | 17..775 | 3780 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:52:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7829-RA | 976 | CG7829-RA | 37..795 | 17..775 | 3780 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:52:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 29817340..29817728 | 405..17 | 1930 | 99.7 | Minus |
3R | 32079331 | 3R | 29816919..29817292 | 775..402 | 1870 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 15:52:41 has no hits.
BO13684.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:03:46 Download gff for
BO13684.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7829-RA | 1..762 | 17..779 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:17:36 Download gff for
BO13684.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7829-RA | 27..798 | 5..779 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:46:42 Download gff for
BO13684.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7829-RA | 37..795 | 17..777 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:03:46 Download gff for
BO13684.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7829-RA | 27..798 | 5..779 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:05:41 Download gff for
BO13684.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7829-RA | 37..795 | 17..777 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:05:41 Download gff for
BO13684.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 29816917..29817290 | 404..777 | 99 | <- | Minus |
3R | 29817342..29817728 | 17..403 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:46:42 Download gff for
BO13684.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 25642639..25643012 | 404..777 | 99 | <- | Minus |
arm_3R | 25643064..25643450 | 17..403 | 99 | | Minus |
BO13684.pep Sequence
Translation from 16 to 793
> BO13684.pep
MMYKLWWKLLLLQASGCLSLESRPDPRIVGGFPADIANIPYIVSIQLYGI
HHCGGSIINNHTILTAGHCLNGVPHRLLKVKVGGTSRYRKDGELFSVADL
QVHENFNPKTMDYDIGIIRLTKNLTLSRKVKAIPINPERVAEGTYATIAG
WGFKSMNGPPSDSLRYARVPIVNQTACRNLLGKTVTDRMLCAGYLKGGTD
ACQMDSGGPLSVREQLVGIVSWGVGCALADKPGVYSRLDALHPWLDQVLN
KSKASFLDH
BO13684.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:40:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7829-PA | 253 | CG7829-PA | 1..253 | 1..253 | 1349 | 100 | Plus |
kappaTry-PC | 263 | CG12388-PC | 7..257 | 9..249 | 464 | 39.4 | Plus |
zetaTry-PA | 280 | CG12387-PA | 29..277 | 18..249 | 435 | 41.4 | Plus |
Try29F-PD | 267 | CG9564-PD | 23..264 | 9..248 | 434 | 41.5 | Plus |
Try29F-PC | 267 | CG9564-PC | 23..264 | 9..248 | 434 | 41.5 | Plus |