Clone Sequence Records
BO13686.3prime Sequence
398 bp (397 high quality bases) assembled on 2006-05-08
> BO13686.3prime
ATGGTCTAGAAAGCTTGCTGAGCTCTCGGCATTCTTCTTCTTCAGCGTCT
CCATGACGCCGGCGAAGTTGGCCGTCTTCTTTTTGGCCGACTTGGGCGTG
GACGTCTGGCTGCGGACGCGCATCTGGGTGGGGGCCACATCGTCGCTGAA
ATCAAAGTCGTTGGCCTTCTGCGGTTCCTGCTCAATGGCGTCGGTGGCCT
GTTCGAGTTCCTTGCTATTGCCGCCAGATCCCGCCTCCGGCGATGGAGCC
CTGCGTCCCGGAAATTGCCATTGCAGTTCCGGAATATTTCCCGCCTCCAG
CATCAGATAGTAGCCCTCTAGCTCCTCCGCGTTGGCGGAGAACTTGTCCG
CCGTATTCGCCGCCGGCTCCACATCCGTTGCCATGTCGACTGATAACT
BO13686.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:09:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11750-PA | 369 | CG11750-RA | 1..366 | 384..19 | 1830 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:08:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pa1-RA | 1628 | CG11750-RA | 94..459 | 384..19 | 1830 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 07:08:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 11359329..11359537 | 384..176 | 1045 | 100 | Minus |
X | 23542271 | X | 11359604..11359760 | 175..19 | 785 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-03 07:08:46 has no hits.
BO13686.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:10:12 Download gff for
BO13686.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11750-PA | 1..369 | 18..384 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:58:41 Download gff for
BO13686.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11750-PA | 1..369 | 18..384 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:28:02 Download gff for
BO13686.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pa1-RA | 94..463 | 13..384 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 09:43:21 Download gff for
BO13686.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pa1-RA | 94..463 | 13..384 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 09:43:21 Download gff for
BO13686.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 11359329..11359537 | 176..384 | 100 | -> | Minus |
X | 11359604..11359764 | 13..175 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:28:02 Download gff for
BO13686.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 11253362..11253570 | 176..384 | 100 | -> | Minus |
arm_X | 11253637..11253797 | 13..175 | 98 | | Minus |
BO13686.5prime Sequence
398 bp (397 high quality bases) assembled on 2006-05-08
> BO13686.5prime
GAAGTTATCAGTCGACATGGCAACGGATGTGGAGCCGGCGGCGAATACGG
CGGACAAGTTCTCCGCCAACGCGGAGGAGCTAGAGGGCTACTATCTGATG
CTGGAGGCGGGAAATATTCCGGAACTGCAATGGCAATTTCCGGGACGCAG
GGCTCCATCGCCGGAGGCGGGATCTGGCGGCAATAGCAAGGAACTCGAAC
AGGCCACCGACGCCATTGAGCAGGAACCGCAGAAGGCCAACGACTTTGAT
TTCAGCGACGATGTGGCCCCCACCCAGATGCGCGTCCGCAGCCAGACGTC
CACGCCCAAGTCGGCCAAAAAGAAGACGGCCAACTTCGCCGGCGTCATGG
AGACGCTGAAGAAGAAGAATGCCGAGAGCTCAGCAAGCTTTCTAGACC
BO13686.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:09:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11750-PA | 369 | CG11750-RA | 1..366 | 17..382 | 1830 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 23:47:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pa1-RA | 1628 | CG11750-RA | 94..459 | 17..382 | 1830 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 23:47:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 11359329..11359537 | 17..225 | 1045 | 100 | Plus |
X | 23542271 | X | 11359604..11359760 | 226..382 | 785 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-09 23:47:20 has no hits.
BO13686.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:10:13 Download gff for
BO13686.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11750-PA | 1..369 | 17..383 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:58:42 Download gff for
BO13686.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11750-PA | 1..369 | 17..383 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:30:15 Download gff for
BO13686.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pa1-RA | 94..463 | 17..388 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 00:58:21 Download gff for
BO13686.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pa1-RA | 94..463 | 17..388 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 00:58:21 Download gff for
BO13686.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 11359329..11359537 | 17..225 | 100 | -> | Plus |
X | 11359604..11359764 | 226..388 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:30:15 Download gff for
BO13686.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 11253362..11253570 | 17..225 | 100 | -> | Plus |
arm_X | 11253637..11253797 | 226..388 | 98 | | Plus |
BO13686.complete Sequence
400 bp assembled on 2006-10-11
GenBank Submission: FJ632906
> BO13686.complete
GAAGTTATCAGTCGACATGGCAACGGATGTGGAGCCGGCGGCGAATACGG
CGGACAAGTTCTCCGCCAACGCGGAGGAGCTAGAGGGCTACTATCTGATG
CTGGAGGCGGGAAATATTCCGGAACTGCAATGGCAATTTCCGGGACGCAG
GGCTCCATCGCCGGAGGCGGGATCTGGCGGCAATAGCAAGGAACTCGAAC
AGGCCACCGACGCCATTGAGCAGGAACCGCAGAAGGCCAACGACTTTGAT
TTCAGCGACGATGTGGCCCCCACCCAGATGCGCGTCCGCAGCCAGACGTC
CACGCCCAAGTCGGCCAAAAAGAAGACGGCCAACTTCGCCGGCGTCATGG
AGACGCTGAAGAAGAAGAATGCCGAGAGCTCAGCAAGCTTTCTAGACCAT
BO13686.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:29:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pa1-RA | 369 | CG11750-PA | 1..366 | 17..382 | 1830 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:29:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pa1-RA | 1628 | CG11750-RA | 94..459 | 17..382 | 1830 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:29:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 11359329..11359537 | 17..225 | 1045 | 100 | Plus |
X | 23542271 | X | 11359604..11359760 | 226..382 | 785 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:29:07 has no hits.
BO13686.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:45:28 Download gff for
BO13686.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11750-RA | 1..369 | 17..383 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:59:27 Download gff for
BO13686.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11750-RA | 93..462 | 17..388 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:53:10 Download gff for
BO13686.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pa1-RA | 94..459 | 17..384 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:45:28 Download gff for
BO13686.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11750-RA | 93..462 | 17..388 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:21:17 Download gff for
BO13686.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pa1-RA | 94..459 | 17..384 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:21:17 Download gff for
BO13686.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 11359329..11359537 | 17..225 | 100 | -> | Plus |
X | 11359604..11359760 | 226..384 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:53:10 Download gff for
BO13686.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 11253362..11253570 | 17..225 | 100 | -> | Plus |
arm_X | 11253637..11253793 | 226..384 | 98 | | Plus |
BO13686.pep Sequence
Translation from 16 to 400
> BO13686.pep
MATDVEPAANTADKFSANAEELEGYYLMLEAGNIPELQWQFPGRRAPSPE
AGSGGNSKELEQATDAIEQEPQKANDFDFSDDVAPTQMRVRSQTSTPKSA
KKKTANFAGVMETLKKKNAESSASFLDH
BO13686.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:05:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pa1-PA | 122 | CG11750-PA | 1..122 | 1..122 | 623 | 100 | Plus |