Clone BO13686 Report

Search the DGRC for BO13686

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:136
Well:86
Vector:pDNR-Dual
Associated Gene/TranscriptCG11750-RA
Protein status:BO13686.pep: validated full length
Sequenced Size:400

Clone Sequence Records

BO13686.3prime Sequence

398 bp (397 high quality bases) assembled on 2006-05-08

> BO13686.3prime
ATGGTCTAGAAAGCTTGCTGAGCTCTCGGCATTCTTCTTCTTCAGCGTCT
CCATGACGCCGGCGAAGTTGGCCGTCTTCTTTTTGGCCGACTTGGGCGTG
GACGTCTGGCTGCGGACGCGCATCTGGGTGGGGGCCACATCGTCGCTGAA
ATCAAAGTCGTTGGCCTTCTGCGGTTCCTGCTCAATGGCGTCGGTGGCCT
GTTCGAGTTCCTTGCTATTGCCGCCAGATCCCGCCTCCGGCGATGGAGCC
CTGCGTCCCGGAAATTGCCATTGCAGTTCCGGAATATTTCCCGCCTCCAG
CATCAGATAGTAGCCCTCTAGCTCCTCCGCGTTGGCGGAGAACTTGTCCG
CCGTATTCGCCGCCGGCTCCACATCCGTTGCCATGTCGACTGATAACT

BO13686.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:09:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG11750-PA 369 CG11750-RA 1..366 384..19 1830 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:08:50
Subject Length Description Subject Range Query Range Score Percent Strand
Pa1-RA 1628 CG11750-RA 94..459 384..19 1830 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 07:08:41
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 11359329..11359537 384..176 1045 100 Minus
X 23542271 X 11359604..11359760 175..19 785 100 Minus
Blast to na_te.dros performed on 2015-02-03 07:08:46 has no hits.

BO13686.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:10:12 Download gff for BO13686.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11750-PA 1..369 18..384 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:58:41 Download gff for BO13686.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11750-PA 1..369 18..384 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:28:02 Download gff for BO13686.3prime
Subject Subject Range Query Range Percent Splice Strand
Pa1-RA 94..463 13..384 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 09:43:21 Download gff for BO13686.3prime
Subject Subject Range Query Range Percent Splice Strand
Pa1-RA 94..463 13..384 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 09:43:21 Download gff for BO13686.3prime
Subject Subject Range Query Range Percent Splice Strand
X 11359329..11359537 176..384 100 -> Minus
X 11359604..11359764 13..175 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:28:02 Download gff for BO13686.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 11253362..11253570 176..384 100 -> Minus
arm_X 11253637..11253797 13..175 98   Minus

BO13686.5prime Sequence

398 bp (397 high quality bases) assembled on 2006-05-08

> BO13686.5prime
GAAGTTATCAGTCGACATGGCAACGGATGTGGAGCCGGCGGCGAATACGG
CGGACAAGTTCTCCGCCAACGCGGAGGAGCTAGAGGGCTACTATCTGATG
CTGGAGGCGGGAAATATTCCGGAACTGCAATGGCAATTTCCGGGACGCAG
GGCTCCATCGCCGGAGGCGGGATCTGGCGGCAATAGCAAGGAACTCGAAC
AGGCCACCGACGCCATTGAGCAGGAACCGCAGAAGGCCAACGACTTTGAT
TTCAGCGACGATGTGGCCCCCACCCAGATGCGCGTCCGCAGCCAGACGTC
CACGCCCAAGTCGGCCAAAAAGAAGACGGCCAACTTCGCCGGCGTCATGG
AGACGCTGAAGAAGAAGAATGCCGAGAGCTCAGCAAGCTTTCTAGACC

BO13686.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:09:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG11750-PA 369 CG11750-RA 1..366 17..382 1830 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 23:47:24
Subject Length Description Subject Range Query Range Score Percent Strand
Pa1-RA 1628 CG11750-RA 94..459 17..382 1830 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 23:47:17
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 11359329..11359537 17..225 1045 100 Plus
X 23542271 X 11359604..11359760 226..382 785 100 Plus
Blast to na_te.dros performed on 2015-02-09 23:47:20 has no hits.

BO13686.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:10:13 Download gff for BO13686.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11750-PA 1..369 17..383 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:58:42 Download gff for BO13686.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11750-PA 1..369 17..383 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:30:15 Download gff for BO13686.5prime
Subject Subject Range Query Range Percent Splice Strand
Pa1-RA 94..463 17..388 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 00:58:21 Download gff for BO13686.5prime
Subject Subject Range Query Range Percent Splice Strand
Pa1-RA 94..463 17..388 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 00:58:21 Download gff for BO13686.5prime
Subject Subject Range Query Range Percent Splice Strand
X 11359329..11359537 17..225 100 -> Plus
X 11359604..11359764 226..388 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:30:15 Download gff for BO13686.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 11253362..11253570 17..225 100 -> Plus
arm_X 11253637..11253797 226..388 98   Plus

BO13686.complete Sequence

400 bp assembled on 2006-10-11

GenBank Submission: FJ632906

> BO13686.complete
GAAGTTATCAGTCGACATGGCAACGGATGTGGAGCCGGCGGCGAATACGG
CGGACAAGTTCTCCGCCAACGCGGAGGAGCTAGAGGGCTACTATCTGATG
CTGGAGGCGGGAAATATTCCGGAACTGCAATGGCAATTTCCGGGACGCAG
GGCTCCATCGCCGGAGGCGGGATCTGGCGGCAATAGCAAGGAACTCGAAC
AGGCCACCGACGCCATTGAGCAGGAACCGCAGAAGGCCAACGACTTTGAT
TTCAGCGACGATGTGGCCCCCACCCAGATGCGCGTCCGCAGCCAGACGTC
CACGCCCAAGTCGGCCAAAAAGAAGACGGCCAACTTCGCCGGCGTCATGG
AGACGCTGAAGAAGAAGAATGCCGAGAGCTCAGCAAGCTTTCTAGACCAT

BO13686.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:29:08
Subject Length Description Subject Range Query Range Score Percent Strand
Pa1-RA 369 CG11750-PA 1..366 17..382 1830 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:29:09
Subject Length Description Subject Range Query Range Score Percent Strand
Pa1-RA 1628 CG11750-RA 94..459 17..382 1830 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:29:05
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 11359329..11359537 17..225 1045 100 Plus
X 23542271 X 11359604..11359760 226..382 785 100 Plus
Blast to na_te.dros performed on 2014-11-28 00:29:07 has no hits.

BO13686.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:45:28 Download gff for BO13686.complete
Subject Subject Range Query Range Percent Splice Strand
CG11750-RA 1..369 17..383 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:59:27 Download gff for BO13686.complete
Subject Subject Range Query Range Percent Splice Strand
CG11750-RA 93..462 17..388 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:53:10 Download gff for BO13686.complete
Subject Subject Range Query Range Percent Splice Strand
Pa1-RA 94..459 17..384 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:45:28 Download gff for BO13686.complete
Subject Subject Range Query Range Percent Splice Strand
CG11750-RA 93..462 17..388 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:21:17 Download gff for BO13686.complete
Subject Subject Range Query Range Percent Splice Strand
Pa1-RA 94..459 17..384 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:21:17 Download gff for BO13686.complete
Subject Subject Range Query Range Percent Splice Strand
X 11359329..11359537 17..225 100 -> Plus
X 11359604..11359760 226..384 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:53:10 Download gff for BO13686.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 11253362..11253570 17..225 100 -> Plus
arm_X 11253637..11253793 226..384 98   Plus

BO13686.pep Sequence

Translation from 16 to 400

> BO13686.pep
MATDVEPAANTADKFSANAEELEGYYLMLEAGNIPELQWQFPGRRAPSPE
AGSGGNSKELEQATDAIEQEPQKANDFDFSDDVAPTQMRVRSQTSTPKSA
KKKTANFAGVMETLKKKNAESSASFLDH

BO13686.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:05:03
Subject Length Description Subject Range Query Range Score Percent Strand
Pa1-PA 122 CG11750-PA 1..122 1..122 623 100 Plus