Clone Sequence Records
BO13687.3prime Sequence
542 bp (541 high quality bases) assembled on 2006-05-08
> BO13687.3prime
ATGGTCTAGAAAGCTTGCTGTGAACAGCGGCAGGTGATAGAAGTCGAACC
CTCGATATCCTTTGGCTGCCAGCCAGATGTACACGACGTGATAGGCCCCG
GGTATGAAGCAGATGAGTCCCGCTACGAAGAACACGACTCCCTGCGACGT
GTTCTGCGGATCCGCGATGGCAAAGGTGCCCATCACAAAGAGGCCCGTGC
CCACGACCAGGAGCGTAAAGGCGGCCAGCACTGTGCGCCAGTTCTCACGC
ACCTTGGGATGCCGCCAGCAGTATGTGTTGGTCTCCTCCGTGGGCAGGTT
GCCGTACTCCTGGATGAGCGAGTCGCTGTCCCGGGACGTTGTGTCCTCGG
CATACTTGTTGTAGCCCTTGGGGTCCTGAATCCGGATGGAGACGTCTTCG
GTGGAGCGACCTTGCTTGCCTCTCATGGGCGTGGATATCACGGTGGAGCC
ATAGACGCGTATCGCCTCGTCGGTCTCCTCCTCGAAGGCGTCGTGAATGG
AGAAGCCCCTGGCCCCGTTGTTGTACATGTCGACTGATAACT
BO13687.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:09:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12025-PA | 513 | CG12025-RA | 1..510 | 528..19 | 2550 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 12:16:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12025-RC | 2839 | CG12025-RC | 328..837 | 528..19 | 2550 | 100 | Minus |
CG12025-RB | 1992 | CG12025-RB | 328..837 | 528..19 | 2550 | 100 | Minus |
CG12025-RA | 1211 | CG12025-RA | 328..837 | 528..19 | 2550 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 12:16:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 1867135..1867489 | 373..19 | 1760 | 99.7 | Minus |
3L | 28110227 | 3L | 1865757..1865918 | 528..367 | 810 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-06 12:16:36 has no hits.
BO13687.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:10:14 Download gff for
BO13687.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12025-PA | 1..513 | 15..528 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:58:43 Download gff for
BO13687.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12025-PA | 1..513 | 15..528 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 06:58:57 Download gff for
BO13687.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12025-RA | 320..842 | 13..536 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:39:49 Download gff for
BO13687.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12025-RA | 320..842 | 13..536 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:39:49 Download gff for
BO13687.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 1867141..1867494 | 13..367 | 99 | | Minus |
3L | 1865749..1865917 | 368..536 | 97 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 06:58:57 Download gff for
BO13687.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 1865749..1865917 | 368..536 | 97 | -> | Minus |
arm_3L | 1867141..1867494 | 13..367 | 99 | | Minus |
BO13687.5prime Sequence
542 bp (541 high quality bases) assembled on 2006-05-08
> BO13687.5prime
GAAGTTATCAGTCGACATGTACAACAACGGGGCCAGGGGCTTCTCCATTC
ACGACGCCTTCGAGGAGGAGACCGACGAGGCGATACGCGTCTATGGCTCC
ACCGTGATATCCACGCCCATGAGAGGCAAGCAAGGTCGCTCCACCGAAGA
CGTCTCCATCCGGATTCAGGACCCCAAGGGCTACAACAAGTATGCCGAGG
ACACAACGTCCCGGGACAGCGACTCGCTCATCCAGGAGTACGGCAACCTG
CCCACGGAGGAGACCAACACATACTGCTGGCGGCATCCCAAGGTGCGTGA
GAACTGGCGCACAGTGCTGGCCGCCTTTACGCTCCTGGTCGTGGGCACGG
GCCTCTTTGTGATGGGCACCTTTGCCATCGCGGATCCGCAGAACACGTCG
CAGGGAGTCGTGTTCTTCGTAGCGGGACTCATCTGCTTCATACCCGGGGC
CTATCACGTCGTGTACATCTGGCTGGCAGCCAAAGGATATCGAGGGTTCG
ACTTCTATCACCTGCCGCTGTTCACAGCAAGCTTTCTAGACC
BO13687.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:09:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12025-PA | 513 | CG12025-RA | 1..510 | 17..526 | 2550 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:11:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12025-RC | 2839 | CG12025-RC | 328..837 | 17..526 | 2550 | 100 | Plus |
CG12025-RB | 1992 | CG12025-RB | 328..837 | 17..526 | 2550 | 100 | Plus |
CG12025-RA | 1211 | CG12025-RA | 328..837 | 17..526 | 2550 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:11:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 1867135..1867489 | 172..526 | 1760 | 99.7 | Plus |
3L | 28110227 | 3L | 1865757..1865918 | 17..178 | 810 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 19:11:56 has no hits.
BO13687.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:10:15 Download gff for
BO13687.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12025-PA | 1..513 | 17..530 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:58:45 Download gff for
BO13687.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12025-PA | 1..513 | 17..530 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:15:44 Download gff for
BO13687.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12025-RA | 320..842 | 9..532 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:32:56 Download gff for
BO13687.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12025-RA | 320..842 | 9..532 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:32:56 Download gff for
BO13687.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 1865749..1865917 | 9..177 | 97 | -> | Plus |
3L | 1867141..1867494 | 178..532 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:15:44 Download gff for
BO13687.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 1865749..1865917 | 9..177 | 97 | -> | Plus |
arm_3L | 1867141..1867494 | 178..532 | 99 | | Plus |
BO13687.complete Sequence
544 bp assembled on 2006-10-11
GenBank Submission: FJ632907
> BO13687.complete
GAAGTTATCAGTCGACATGTACAACAACGGGGCCAGGGGCTTCTCCATTC
ACGACGCCTTCGAGGAGGAGACCGACGAGGCGATACGCGTCTATGGCTCC
ACCGTGATATCCACGCCCATGAGAGGCAAGCAAGGTCGCTCCACCGAAGA
CGTCTCCATCCGGATTCAGGACCCCAAGGGCTACAACAAGTATGCCGAGG
ACACAACGTCCCGGGACAGCGACTCGCTCATCCAGGAGTACGGCAACCTG
CCCACGGAGGAGACCAACACATACTGCTGGCGGCATCCCAAGGTGCGTGA
GAACTGGCGCACAGTGCTGGCCGCCTTTACGCTCCTGGTCGTGGGCACGG
GCCTCTTTGTGATGGGCACCTTTGCCATCGCGGATCCGCAGAACACGTCG
CAGGGAGTCGTGTTCTTCGTAGCGGGACTCATCTGCTTCATACCCGGGGC
CTATCACGTCGTGTACATCTGGCTGGCAGCCAAAGGATATCGAGGGTTCG
ACTTCTATCACCTGCCGCTGTTCACAGCAAGCTTTCTAGACCAT
BO13687.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:51:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12025-RC | 513 | CG12025-PC | 1..510 | 17..526 | 2550 | 100 | Plus |
CG12025-RB | 513 | CG12025-PB | 1..510 | 17..526 | 2550 | 100 | Plus |
CG12025-RA | 513 | CG12025-PA | 1..510 | 17..526 | 2550 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:51:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12025-RC | 2839 | CG12025-RC | 328..837 | 17..526 | 2550 | 100 | Plus |
CG12025-RB | 1992 | CG12025-RB | 328..837 | 17..526 | 2550 | 100 | Plus |
CG12025-RA | 1211 | CG12025-RA | 328..837 | 17..526 | 2550 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:51:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 1867135..1867489 | 172..526 | 1760 | 99.7 | Plus |
3L | 28110227 | 3L | 1865757..1865918 | 17..178 | 810 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:51:02 has no hits.
BO13687.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:44:59 Download gff for
BO13687.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12025-RA | 1..513 | 17..530 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:58:56 Download gff for
BO13687.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12025-RA | 319..841 | 9..532 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:33:58 Download gff for
BO13687.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12025-RA | 328..837 | 17..528 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:44:59 Download gff for
BO13687.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12025-RA | 319..841 | 9..532 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:27:54 Download gff for
BO13687.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12025-RA | 328..837 | 17..528 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:27:54 Download gff for
BO13687.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 1865757..1865917 | 17..177 | 100 | -> | Plus |
3L | 1867141..1867489 | 178..528 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:33:58 Download gff for
BO13687.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 1865757..1865917 | 17..177 | 100 | -> | Plus |
arm_3L | 1867141..1867489 | 178..528 | 99 | | Plus |
BO13687.pep Sequence
Translation from 16 to 544
> BO13687.pep
MYNNGARGFSIHDAFEEETDEAIRVYGSTVISTPMRGKQGRSTEDVSIRI
QDPKGYNKYAEDTTSRDSDSLIQEYGNLPTEETNTYCWRHPKVRENWRTV
LAAFTLLVVGTGLFVMGTFAIADPQNTSQGVVFFVAGLICFIPGAYHVVY
IWLAAKGYRGFDFYHLPLFTASFLDH
BO13687.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:06:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12025-PC | 170 | CG12025-PC | 1..170 | 1..170 | 910 | 100 | Plus |
CG12025-PB | 170 | CG12025-PB | 1..170 | 1..170 | 910 | 100 | Plus |
CG12025-PA | 170 | CG12025-PA | 1..170 | 1..170 | 910 | 100 | Plus |