Clone BO13687 Report

Search the DGRC for BO13687

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:136
Well:87
Vector:pDNR-Dual
Associated Gene/TranscriptCG12025-RA
Protein status:BO13687.pep: validated full length
Sequenced Size:544

Clone Sequence Records

BO13687.3prime Sequence

542 bp (541 high quality bases) assembled on 2006-05-08

> BO13687.3prime
ATGGTCTAGAAAGCTTGCTGTGAACAGCGGCAGGTGATAGAAGTCGAACC
CTCGATATCCTTTGGCTGCCAGCCAGATGTACACGACGTGATAGGCCCCG
GGTATGAAGCAGATGAGTCCCGCTACGAAGAACACGACTCCCTGCGACGT
GTTCTGCGGATCCGCGATGGCAAAGGTGCCCATCACAAAGAGGCCCGTGC
CCACGACCAGGAGCGTAAAGGCGGCCAGCACTGTGCGCCAGTTCTCACGC
ACCTTGGGATGCCGCCAGCAGTATGTGTTGGTCTCCTCCGTGGGCAGGTT
GCCGTACTCCTGGATGAGCGAGTCGCTGTCCCGGGACGTTGTGTCCTCGG
CATACTTGTTGTAGCCCTTGGGGTCCTGAATCCGGATGGAGACGTCTTCG
GTGGAGCGACCTTGCTTGCCTCTCATGGGCGTGGATATCACGGTGGAGCC
ATAGACGCGTATCGCCTCGTCGGTCTCCTCCTCGAAGGCGTCGTGAATGG
AGAAGCCCCTGGCCCCGTTGTTGTACATGTCGACTGATAACT

BO13687.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:09:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG12025-PA 513 CG12025-RA 1..510 528..19 2550 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 12:16:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG12025-RC 2839 CG12025-RC 328..837 528..19 2550 100 Minus
CG12025-RB 1992 CG12025-RB 328..837 528..19 2550 100 Minus
CG12025-RA 1211 CG12025-RA 328..837 528..19 2550 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 12:16:32
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1867135..1867489 373..19 1760 99.7 Minus
3L 28110227 3L 1865757..1865918 528..367 810 100 Minus
Blast to na_te.dros performed on 2015-02-06 12:16:36 has no hits.

BO13687.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:10:14 Download gff for BO13687.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12025-PA 1..513 15..528 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:58:43 Download gff for BO13687.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12025-PA 1..513 15..528 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 06:58:57 Download gff for BO13687.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12025-RA 320..842 13..536 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:39:49 Download gff for BO13687.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12025-RA 320..842 13..536 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:39:49 Download gff for BO13687.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 1867141..1867494 13..367 99   Minus
3L 1865749..1865917 368..536 97 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 06:58:57 Download gff for BO13687.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1865749..1865917 368..536 97 -> Minus
arm_3L 1867141..1867494 13..367 99   Minus

BO13687.5prime Sequence

542 bp (541 high quality bases) assembled on 2006-05-08

> BO13687.5prime
GAAGTTATCAGTCGACATGTACAACAACGGGGCCAGGGGCTTCTCCATTC
ACGACGCCTTCGAGGAGGAGACCGACGAGGCGATACGCGTCTATGGCTCC
ACCGTGATATCCACGCCCATGAGAGGCAAGCAAGGTCGCTCCACCGAAGA
CGTCTCCATCCGGATTCAGGACCCCAAGGGCTACAACAAGTATGCCGAGG
ACACAACGTCCCGGGACAGCGACTCGCTCATCCAGGAGTACGGCAACCTG
CCCACGGAGGAGACCAACACATACTGCTGGCGGCATCCCAAGGTGCGTGA
GAACTGGCGCACAGTGCTGGCCGCCTTTACGCTCCTGGTCGTGGGCACGG
GCCTCTTTGTGATGGGCACCTTTGCCATCGCGGATCCGCAGAACACGTCG
CAGGGAGTCGTGTTCTTCGTAGCGGGACTCATCTGCTTCATACCCGGGGC
CTATCACGTCGTGTACATCTGGCTGGCAGCCAAAGGATATCGAGGGTTCG
ACTTCTATCACCTGCCGCTGTTCACAGCAAGCTTTCTAGACC

BO13687.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:09:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG12025-PA 513 CG12025-RA 1..510 17..526 2550 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:11:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG12025-RC 2839 CG12025-RC 328..837 17..526 2550 100 Plus
CG12025-RB 1992 CG12025-RB 328..837 17..526 2550 100 Plus
CG12025-RA 1211 CG12025-RA 328..837 17..526 2550 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:11:54
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1867135..1867489 172..526 1760 99.7 Plus
3L 28110227 3L 1865757..1865918 17..178 810 100 Plus
Blast to na_te.dros performed on 2015-02-12 19:11:56 has no hits.

BO13687.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:10:15 Download gff for BO13687.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12025-PA 1..513 17..530 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:58:45 Download gff for BO13687.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12025-PA 1..513 17..530 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:15:44 Download gff for BO13687.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12025-RA 320..842 9..532 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:32:56 Download gff for BO13687.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12025-RA 320..842 9..532 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:32:56 Download gff for BO13687.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 1865749..1865917 9..177 97 -> Plus
3L 1867141..1867494 178..532 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:15:44 Download gff for BO13687.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1865749..1865917 9..177 97 -> Plus
arm_3L 1867141..1867494 178..532 99   Plus

BO13687.complete Sequence

544 bp assembled on 2006-10-11

GenBank Submission: FJ632907

> BO13687.complete
GAAGTTATCAGTCGACATGTACAACAACGGGGCCAGGGGCTTCTCCATTC
ACGACGCCTTCGAGGAGGAGACCGACGAGGCGATACGCGTCTATGGCTCC
ACCGTGATATCCACGCCCATGAGAGGCAAGCAAGGTCGCTCCACCGAAGA
CGTCTCCATCCGGATTCAGGACCCCAAGGGCTACAACAAGTATGCCGAGG
ACACAACGTCCCGGGACAGCGACTCGCTCATCCAGGAGTACGGCAACCTG
CCCACGGAGGAGACCAACACATACTGCTGGCGGCATCCCAAGGTGCGTGA
GAACTGGCGCACAGTGCTGGCCGCCTTTACGCTCCTGGTCGTGGGCACGG
GCCTCTTTGTGATGGGCACCTTTGCCATCGCGGATCCGCAGAACACGTCG
CAGGGAGTCGTGTTCTTCGTAGCGGGACTCATCTGCTTCATACCCGGGGC
CTATCACGTCGTGTACATCTGGCTGGCAGCCAAAGGATATCGAGGGTTCG
ACTTCTATCACCTGCCGCTGTTCACAGCAAGCTTTCTAGACCAT

BO13687.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:51:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG12025-RC 513 CG12025-PC 1..510 17..526 2550 100 Plus
CG12025-RB 513 CG12025-PB 1..510 17..526 2550 100 Plus
CG12025-RA 513 CG12025-PA 1..510 17..526 2550 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:51:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG12025-RC 2839 CG12025-RC 328..837 17..526 2550 100 Plus
CG12025-RB 1992 CG12025-RB 328..837 17..526 2550 100 Plus
CG12025-RA 1211 CG12025-RA 328..837 17..526 2550 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:51:01
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1867135..1867489 172..526 1760 99.7 Plus
3L 28110227 3L 1865757..1865918 17..178 810 100 Plus
Blast to na_te.dros performed on 2014-11-27 13:51:02 has no hits.

BO13687.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:44:59 Download gff for BO13687.complete
Subject Subject Range Query Range Percent Splice Strand
CG12025-RA 1..513 17..530 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:58:56 Download gff for BO13687.complete
Subject Subject Range Query Range Percent Splice Strand
CG12025-RA 319..841 9..532 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:33:58 Download gff for BO13687.complete
Subject Subject Range Query Range Percent Splice Strand
CG12025-RA 328..837 17..528 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:44:59 Download gff for BO13687.complete
Subject Subject Range Query Range Percent Splice Strand
CG12025-RA 319..841 9..532 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:27:54 Download gff for BO13687.complete
Subject Subject Range Query Range Percent Splice Strand
CG12025-RA 328..837 17..528 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:27:54 Download gff for BO13687.complete
Subject Subject Range Query Range Percent Splice Strand
3L 1865757..1865917 17..177 100 -> Plus
3L 1867141..1867489 178..528 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:33:58 Download gff for BO13687.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1865757..1865917 17..177 100 -> Plus
arm_3L 1867141..1867489 178..528 99   Plus

BO13687.pep Sequence

Translation from 16 to 544

> BO13687.pep
MYNNGARGFSIHDAFEEETDEAIRVYGSTVISTPMRGKQGRSTEDVSIRI
QDPKGYNKYAEDTTSRDSDSLIQEYGNLPTEETNTYCWRHPKVRENWRTV
LAAFTLLVVGTGLFVMGTFAIADPQNTSQGVVFFVAGLICFIPGAYHVVY
IWLAAKGYRGFDFYHLPLFTASFLDH

BO13687.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:06:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG12025-PC 170 CG12025-PC 1..170 1..170 910 100 Plus
CG12025-PB 170 CG12025-PB 1..170 1..170 910 100 Plus
CG12025-PA 170 CG12025-PA 1..170 1..170 910 100 Plus