Clone Sequence Records
BO13688.3prime Sequence
835 bp (736 high quality bases) assembled on 2006-05-08
> BO13688.3prime
ATGGTCTAGAAAGCTTGCAGCGCATAGTTGTGCGATATCGGCATTGGGAA
GGAATCCCGTCCAGGCGATGATCGTGCGGAAGGTCGCTCCACTAGTGAGG
CGCCTAATGATGTGCACATTTATCTTCTTGCCATGAATGTCGTCCACTTT
CCGGCCGCGCAGGTGATCCAGCACCATCTGGCCACGGGTGTGGATGCCAC
TCAGCTCCACGGTGGCGTAGTACTGCCGCTGTTCGGCGATCATCGCATCC
GGGAAGAGATAGGCGGCGGTGAGTAGGGAATCACAACTGATCCACTTCAC
GAATCCTCGCGGCTCCAGCATGGAGCGTTCCACGCGTGTGAGTAGCTCTA
TAAAGGGATGATCAACCGCTCCGAGGACATTCAGTCGCCAGTCGAGGGTG
GTGTCGAACTCTCCATCGATGCAGGGCTCCCAGGGCAGGATGATCGCCGG
TTCCAGCAGACGCTCCAGGGTAATGTGCGCCGCCTCGGGATCCATCATGA
AATTGAATTCGGCACTTTTCGTGACATTACCCTTGCCGAATATGTTGCCA
CCCATTATATAGACTCGACCAATGTTCGTCAGAAATGAGTTTCCATACAA
ATTGATGCAGTTGGCAAAGTTGGTAAGTGGTCCGCACAGCAGAAAGTCCA
CTTGGCCGGGATTAGCTCTGGCCAGGCGGTACATGGCATTGACAGCGTGC
TCCGGTTGCAGTTCCTGCTCCACATCGACCACAGGATAGTTGCCCACATC
GTTTAGGCCATCCTGGCCATGGAAACAGTTGGTATACTCCCAAGTGCGTG
GCACTATGGATTCGTAACAGCCCCTAAAGACCGGA
BO13688.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:09:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11158-PA | 1035 | CG11158-RA | 216..1032 | 835..19 | 4085 | 100 | Minus |
CG5418-PA | 1068 | CG5418-RA | 872..908 | 194..158 | 135 | 94.5 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 11:43:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11158-RA | 1608 | CG11158-RA | 240..1056 | 835..19 | 4085 | 100 | Minus |
CG5418-RA | 1196 | CG5418-RA | 352..1028 | 726..47 | 420 | 71.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 11:43:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 13683248..13684064 | 835..19 | 4085 | 100 | Minus |
2L | 23513712 | 2L | 12452170..12452789 | 107..726 | 385 | 70.8 | Plus |
Blast to na_te.dros performed on 2015-01-31 11:43:24 has no hits.
BO13688.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:10:16 Download gff for
BO13688.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11158-PA | 217..1035 | 18..834 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:58:47 Download gff for
BO13688.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11158-PA | 217..1035 | 18..834 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:51:54 Download gff for
BO13688.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11158-RA | 241..1060 | 13..834 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:58:01 Download gff for
BO13688.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11158-RA | 241..1060 | 13..834 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:58:01 Download gff for
BO13688.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 13683249..13684068 | 13..834 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:51:54 Download gff for
BO13688.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 13577282..13578101 | 13..834 | 99 | | Minus |
BO13688.5prime Sequence
869 bp (770 high quality bases) assembled on 2006-05-08
> BO13688.5prime
GAAGTTATCAGTCGACATGGACAAGAAGCATCGCCTCGTGGTCTACGACT
GCGACATTGGGACCGATGATGCCTGGGGATTGGCCATGTTGCTGCGCGCG
GAGGAGCTAACTCTGCGCGAAGGAAGGACCTGCAAAGTGTTGGCCATAAC
AACGGTGCATGGCAACACGGATGCGGACAATGGAACACTGAATGCCCTGC
GGGTGCTGCACACGTTGAACAGGCGCGATGTTCCGGTCTTTAGGGGCTGT
TACGAATCCATAGTGCCACGCACTTGGGAGTATACCAACTGTTTCCATGG
CCAGGATGGCCTAAACGATGTGGGCAACTATCCTGTGGTCGATGTGGAGC
AGGAACTGCAACCGGAGCACGCTGTCAATGCCATGTACCGCCTGGCCAGA
GCTAATCCCGGCCAAGTGGACTTTCTGCTGTGCGGACCACTTACCAACTT
TGCCAACTGCATCAATTTGTATGGAAACTCATTTCTGACGAACATTGGTC
GAGTCTATATAATGGGTGGCAACATATTCGGCAAGGGTAATGTCACGAAA
AGTGCCGAATTCAATTTCATGATGGATCCCGAGGCGGCGCACATTACCCT
GGAGCGTCTGCTGGAACCGGCGATCATCCTGCCCTGGGAGCCCTGCATCG
ATGGAGAGTTCGACACCACCCTCGACTGGCGACTGAATGTCCTCGGAGCG
GTTGATCATCCCTTTATAGAGCTACTCACACGCGTGGAACGCTCCATGCT
GGAGCCGCGAGGATTCGTGAAGTGGATCAGTTGTGATTCCCTACTCACCG
CCGCCTATCTCTTCCCGGATGCGATGATCGCCGAACAGCGGCAGTACTAC
GCCACCGTGGAACTGAGTG
BO13688.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:09:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11158-PA | 1035 | CG11158-RA | 1..853 | 17..869 | 4240 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 08:59:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11158-RA | 1608 | CG11158-RA | 20..877 | 12..869 | 4275 | 99.9 | Plus |
CG5418-RA | 1196 | CG5418-RA | 352..664 | 341..653 | 285 | 73.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 08:59:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 13683246..13683885 | 230..869 | 3185 | 99.8 | Plus |
X | 23542271 | X | 13682971..13683190 | 12..231 | 1100 | 100 | Plus |
2L | 23513712 | 2L | 12452477..12452789 | 653..341 | 275 | 72.5 | Minus |
Blast to na_te.dros performed on 2015-02-02 08:59:34 has no hits.
BO13688.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:10:17 Download gff for
BO13688.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11158-PA | 1..853 | 17..869 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:58:48 Download gff for
BO13688.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11158-PA | 1..853 | 17..869 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 03:52:09 Download gff for
BO13688.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11158-RA | 11..877 | 1..869 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:11:10 Download gff for
BO13688.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11158-RA | 11..877 | 1..869 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 12:11:10 Download gff for
BO13688.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 13682962..13683188 | 1..229 | 98 | -> | Plus |
X | 13683246..13683885 | 230..869 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 03:52:09 Download gff for
BO13688.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 13576995..13577221 | 1..229 | 98 | -> | Plus |
arm_X | 13577279..13577918 | 230..869 | 99 | | Plus |
BO13688.complete Sequence
1066 bp assembled on 2006-10-11
GenBank Submission: FJ632908
> BO13688.complete
GAAGTTATCAGTCGACATGGACAAGAAGCATCGCCTCGTGGTCTACGACT
GCGACATTGGGACCGATGATGCCTGGGGATTGGCCATGTTGCTGCGCGCG
GAGGAGCTAACTCTGCGCGAAGGAAGGACCTGCAAAGTGTTGGCCATAAC
AACGGTGCATGGCAACACGGATGCGGACAATGGAACACTGAATGCCCTGC
GGGTGCTGCACACGTTGAACAGGCGCGATGTTCCGGTCTTTAGGGGCTGT
TACGAATCCATAGTGCCACGCACTTGGGAGTATACCAACTGTTTCCATGG
CCAGGATGGCCTAAACGATGTGGGCAACTATCCTGTGGTCGATGTGGAGC
AGGAACTGCAACCGGAGCACGCTGTCAATGCCATGTACCGCCTGGCCAGA
GCTAATCCCGGCCAAGTGGACTTTCTGCTGTGCGGACCACTTACCAACTT
TGCCAACTGCATCAATTTGTATGGAAACTCATTTCTGACGAACATTGGTC
GAGTCTATATAATGGGTGGCAACATATTCGGCAAGGGTAATGTCACGAAA
AGTGCCGAATTCAATTTCATGATGGATCCCGAGGCGGCGCACATTACCCT
GGAGCGTCTGCTGGAACCGGCGATCATCCTGCCCTGGGAGCCCTGCATCG
ATGGAGAGTTCGACACCACCCTCGACTGGCGACTGAATGTCCTCGGAGCG
GTTGATCATCCCTTTATAGAGCTACTCACACGCGTGGAACGCTCCATGCT
GGAGCCGCGAGGATTCGTGAAGTGGATCAGTTGTGATTCCCTACTCACCG
CCGCCTATCTCTTCCCGGATGCGATGATCGCCGAACAGCGGCAGTACTAC
GCCACCGTGGAGCTGAGTGGCATCCACACCCGTGGCCAGATGGTGCTGGA
TCACCTGCGCGGCCGGAAAGTGGACGACATTCATGGCAAGAAGATAAATG
TGCACATCATTAGGCGCCTCACTAGTGGAGCGACCTTCCGCACGATCATC
GCCTGGACGGGATTCCTTCCCAATGCCGATATCGCACAACTATGCGCTGC
AAGCTTTCTAGACCAT
BO13688.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:22:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11158-RA | 1035 | CG11158-PA | 1..1032 | 17..1048 | 5160 | 100 | Plus |
CG5418-RA | 1068 | CG5418-PA | 340..959 | 341..960 | 385 | 70.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:22:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11158-RA | 1608 | CG11158-RA | 20..1056 | 12..1048 | 5185 | 100 | Plus |
CG5418-RA | 1196 | CG5418-RA | 352..971 | 341..960 | 385 | 70.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:22:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 13683246..13684064 | 230..1048 | 4095 | 100 | Plus |
X | 23542271 | X | 13682971..13683190 | 12..231 | 1100 | 100 | Plus |
2L | 23513712 | 2L | 12452170..12452789 | 960..341 | 385 | 70.8 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:22:24 has no hits.
BO13688.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:45:00 Download gff for
BO13688.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11158-RA | 1..1035 | 17..1049 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:58:58 Download gff for
BO13688.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11158-RA | 56..1105 | 1..1054 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:41:16 Download gff for
BO13688.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11158-RA | 25..1056 | 17..1050 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:45:01 Download gff for
BO13688.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11158-RA | 56..1105 | 1..1054 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:09:56 Download gff for
BO13688.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11158-RA | 25..1056 | 17..1050 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:09:56 Download gff for
BO13688.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 13682976..13683188 | 17..229 | 100 | -> | Plus |
X | 13683246..13684064 | 230..1050 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:41:16 Download gff for
BO13688.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 13577009..13577221 | 17..229 | 100 | -> | Plus |
arm_X | 13577279..13578097 | 230..1050 | 99 | | Plus |
BO13688.pep Sequence
Translation from 16 to 1066
> BO13688.pep
MDKKHRLVVYDCDIGTDDAWGLAMLLRAEELTLREGRTCKVLAITTVHGN
TDADNGTLNALRVLHTLNRRDVPVFRGCYESIVPRTWEYTNCFHGQDGLN
DVGNYPVVDVEQELQPEHAVNAMYRLARANPGQVDFLLCGPLTNFANCIN
LYGNSFLTNIGRVYIMGGNIFGKGNVTKSAEFNFMMDPEAAHITLERLLE
PAIILPWEPCIDGEFDTTLDWRLNVLGAVDHPFIELLTRVERSMLEPRGF
VKWISCDSLLTAAYLFPDAMIAEQRQYYATVELSGIHTRGQMVLDHLRGR
KVDDIHGKKINVHIIRRLTSGATFRTIIAWTGFLPNADIAQLCAASFLDH
BO13688.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:06:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11158-PA | 344 | CG11158-PA | 1..344 | 1..344 | 1838 | 100 | Plus |
CG5418-PA | 355 | CG5418-PA | 7..347 | 3..343 | 1220 | 67.5 | Plus |
CG12177-PC | 362 | CG12177-PC | 25..325 | 6..301 | 583 | 41.2 | Plus |
CG12177-PB | 362 | CG12177-PB | 25..325 | 6..301 | 583 | 41.2 | Plus |
CG12177-PA | 362 | CG12177-PA | 25..325 | 6..301 | 583 | 41.2 | Plus |