Clone BO13688 Report

Search the DGRC for BO13688

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:136
Well:88
Vector:pDNR-Dual
Associated Gene/TranscriptCG11158-RA
Protein status:BO13688.pep: validated full length
Sequenced Size:1066

Clone Sequence Records

BO13688.3prime Sequence

835 bp (736 high quality bases) assembled on 2006-05-08

> BO13688.3prime
ATGGTCTAGAAAGCTTGCAGCGCATAGTTGTGCGATATCGGCATTGGGAA
GGAATCCCGTCCAGGCGATGATCGTGCGGAAGGTCGCTCCACTAGTGAGG
CGCCTAATGATGTGCACATTTATCTTCTTGCCATGAATGTCGTCCACTTT
CCGGCCGCGCAGGTGATCCAGCACCATCTGGCCACGGGTGTGGATGCCAC
TCAGCTCCACGGTGGCGTAGTACTGCCGCTGTTCGGCGATCATCGCATCC
GGGAAGAGATAGGCGGCGGTGAGTAGGGAATCACAACTGATCCACTTCAC
GAATCCTCGCGGCTCCAGCATGGAGCGTTCCACGCGTGTGAGTAGCTCTA
TAAAGGGATGATCAACCGCTCCGAGGACATTCAGTCGCCAGTCGAGGGTG
GTGTCGAACTCTCCATCGATGCAGGGCTCCCAGGGCAGGATGATCGCCGG
TTCCAGCAGACGCTCCAGGGTAATGTGCGCCGCCTCGGGATCCATCATGA
AATTGAATTCGGCACTTTTCGTGACATTACCCTTGCCGAATATGTTGCCA
CCCATTATATAGACTCGACCAATGTTCGTCAGAAATGAGTTTCCATACAA
ATTGATGCAGTTGGCAAAGTTGGTAAGTGGTCCGCACAGCAGAAAGTCCA
CTTGGCCGGGATTAGCTCTGGCCAGGCGGTACATGGCATTGACAGCGTGC
TCCGGTTGCAGTTCCTGCTCCACATCGACCACAGGATAGTTGCCCACATC
GTTTAGGCCATCCTGGCCATGGAAACAGTTGGTATACTCCCAAGTGCGTG
GCACTATGGATTCGTAACAGCCCCTAAAGACCGGA

BO13688.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:09:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG11158-PA 1035 CG11158-RA 216..1032 835..19 4085 100 Minus
CG5418-PA 1068 CG5418-RA 872..908 194..158 135 94.5 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 11:43:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG11158-RA 1608 CG11158-RA 240..1056 835..19 4085 100 Minus
CG5418-RA 1196 CG5418-RA 352..1028 726..47 420 71.6 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 11:43:20
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 13683248..13684064 835..19 4085 100 Minus
2L 23513712 2L 12452170..12452789 107..726 385 70.8 Plus
Blast to na_te.dros performed on 2015-01-31 11:43:24 has no hits.

BO13688.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:10:16 Download gff for BO13688.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11158-PA 217..1035 18..834 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:58:47 Download gff for BO13688.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11158-PA 217..1035 18..834 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:51:54 Download gff for BO13688.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11158-RA 241..1060 13..834 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:58:01 Download gff for BO13688.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11158-RA 241..1060 13..834 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:58:01 Download gff for BO13688.3prime
Subject Subject Range Query Range Percent Splice Strand
X 13683249..13684068 13..834 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:51:54 Download gff for BO13688.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 13577282..13578101 13..834 99   Minus

BO13688.5prime Sequence

869 bp (770 high quality bases) assembled on 2006-05-08

> BO13688.5prime
GAAGTTATCAGTCGACATGGACAAGAAGCATCGCCTCGTGGTCTACGACT
GCGACATTGGGACCGATGATGCCTGGGGATTGGCCATGTTGCTGCGCGCG
GAGGAGCTAACTCTGCGCGAAGGAAGGACCTGCAAAGTGTTGGCCATAAC
AACGGTGCATGGCAACACGGATGCGGACAATGGAACACTGAATGCCCTGC
GGGTGCTGCACACGTTGAACAGGCGCGATGTTCCGGTCTTTAGGGGCTGT
TACGAATCCATAGTGCCACGCACTTGGGAGTATACCAACTGTTTCCATGG
CCAGGATGGCCTAAACGATGTGGGCAACTATCCTGTGGTCGATGTGGAGC
AGGAACTGCAACCGGAGCACGCTGTCAATGCCATGTACCGCCTGGCCAGA
GCTAATCCCGGCCAAGTGGACTTTCTGCTGTGCGGACCACTTACCAACTT
TGCCAACTGCATCAATTTGTATGGAAACTCATTTCTGACGAACATTGGTC
GAGTCTATATAATGGGTGGCAACATATTCGGCAAGGGTAATGTCACGAAA
AGTGCCGAATTCAATTTCATGATGGATCCCGAGGCGGCGCACATTACCCT
GGAGCGTCTGCTGGAACCGGCGATCATCCTGCCCTGGGAGCCCTGCATCG
ATGGAGAGTTCGACACCACCCTCGACTGGCGACTGAATGTCCTCGGAGCG
GTTGATCATCCCTTTATAGAGCTACTCACACGCGTGGAACGCTCCATGCT
GGAGCCGCGAGGATTCGTGAAGTGGATCAGTTGTGATTCCCTACTCACCG
CCGCCTATCTCTTCCCGGATGCGATGATCGCCGAACAGCGGCAGTACTAC
GCCACCGTGGAACTGAGTG

BO13688.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:09:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG11158-PA 1035 CG11158-RA 1..853 17..869 4240 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 08:59:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG11158-RA 1608 CG11158-RA 20..877 12..869 4275 99.9 Plus
CG5418-RA 1196 CG5418-RA 352..664 341..653 285 73.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 08:59:30
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 13683246..13683885 230..869 3185 99.8 Plus
X 23542271 X 13682971..13683190 12..231 1100 100 Plus
2L 23513712 2L 12452477..12452789 653..341 275 72.5 Minus
Blast to na_te.dros performed on 2015-02-02 08:59:34 has no hits.

BO13688.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:10:17 Download gff for BO13688.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11158-PA 1..853 17..869 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:58:48 Download gff for BO13688.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11158-PA 1..853 17..869 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 03:52:09 Download gff for BO13688.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11158-RA 11..877 1..869 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:11:10 Download gff for BO13688.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11158-RA 11..877 1..869 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 12:11:10 Download gff for BO13688.5prime
Subject Subject Range Query Range Percent Splice Strand
X 13682962..13683188 1..229 98 -> Plus
X 13683246..13683885 230..869 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 03:52:09 Download gff for BO13688.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 13576995..13577221 1..229 98 -> Plus
arm_X 13577279..13577918 230..869 99   Plus

BO13688.complete Sequence

1066 bp assembled on 2006-10-11

GenBank Submission: FJ632908

> BO13688.complete
GAAGTTATCAGTCGACATGGACAAGAAGCATCGCCTCGTGGTCTACGACT
GCGACATTGGGACCGATGATGCCTGGGGATTGGCCATGTTGCTGCGCGCG
GAGGAGCTAACTCTGCGCGAAGGAAGGACCTGCAAAGTGTTGGCCATAAC
AACGGTGCATGGCAACACGGATGCGGACAATGGAACACTGAATGCCCTGC
GGGTGCTGCACACGTTGAACAGGCGCGATGTTCCGGTCTTTAGGGGCTGT
TACGAATCCATAGTGCCACGCACTTGGGAGTATACCAACTGTTTCCATGG
CCAGGATGGCCTAAACGATGTGGGCAACTATCCTGTGGTCGATGTGGAGC
AGGAACTGCAACCGGAGCACGCTGTCAATGCCATGTACCGCCTGGCCAGA
GCTAATCCCGGCCAAGTGGACTTTCTGCTGTGCGGACCACTTACCAACTT
TGCCAACTGCATCAATTTGTATGGAAACTCATTTCTGACGAACATTGGTC
GAGTCTATATAATGGGTGGCAACATATTCGGCAAGGGTAATGTCACGAAA
AGTGCCGAATTCAATTTCATGATGGATCCCGAGGCGGCGCACATTACCCT
GGAGCGTCTGCTGGAACCGGCGATCATCCTGCCCTGGGAGCCCTGCATCG
ATGGAGAGTTCGACACCACCCTCGACTGGCGACTGAATGTCCTCGGAGCG
GTTGATCATCCCTTTATAGAGCTACTCACACGCGTGGAACGCTCCATGCT
GGAGCCGCGAGGATTCGTGAAGTGGATCAGTTGTGATTCCCTACTCACCG
CCGCCTATCTCTTCCCGGATGCGATGATCGCCGAACAGCGGCAGTACTAC
GCCACCGTGGAGCTGAGTGGCATCCACACCCGTGGCCAGATGGTGCTGGA
TCACCTGCGCGGCCGGAAAGTGGACGACATTCATGGCAAGAAGATAAATG
TGCACATCATTAGGCGCCTCACTAGTGGAGCGACCTTCCGCACGATCATC
GCCTGGACGGGATTCCTTCCCAATGCCGATATCGCACAACTATGCGCTGC
AAGCTTTCTAGACCAT

BO13688.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:22:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG11158-RA 1035 CG11158-PA 1..1032 17..1048 5160 100 Plus
CG5418-RA 1068 CG5418-PA 340..959 341..960 385 70.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:22:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG11158-RA 1608 CG11158-RA 20..1056 12..1048 5185 100 Plus
CG5418-RA 1196 CG5418-RA 352..971 341..960 385 70.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:22:23
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 13683246..13684064 230..1048 4095 100 Plus
X 23542271 X 13682971..13683190 12..231 1100 100 Plus
2L 23513712 2L 12452170..12452789 960..341 385 70.8 Minus
Blast to na_te.dros performed on 2014-11-27 14:22:24 has no hits.

BO13688.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:45:00 Download gff for BO13688.complete
Subject Subject Range Query Range Percent Splice Strand
CG11158-RA 1..1035 17..1049 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:58:58 Download gff for BO13688.complete
Subject Subject Range Query Range Percent Splice Strand
CG11158-RA 56..1105 1..1054 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:41:16 Download gff for BO13688.complete
Subject Subject Range Query Range Percent Splice Strand
CG11158-RA 25..1056 17..1050 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:45:01 Download gff for BO13688.complete
Subject Subject Range Query Range Percent Splice Strand
CG11158-RA 56..1105 1..1054 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:09:56 Download gff for BO13688.complete
Subject Subject Range Query Range Percent Splice Strand
CG11158-RA 25..1056 17..1050 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:09:56 Download gff for BO13688.complete
Subject Subject Range Query Range Percent Splice Strand
X 13682976..13683188 17..229 100 -> Plus
X 13683246..13684064 230..1050 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:41:16 Download gff for BO13688.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 13577009..13577221 17..229 100 -> Plus
arm_X 13577279..13578097 230..1050 99   Plus

BO13688.pep Sequence

Translation from 16 to 1066

> BO13688.pep
MDKKHRLVVYDCDIGTDDAWGLAMLLRAEELTLREGRTCKVLAITTVHGN
TDADNGTLNALRVLHTLNRRDVPVFRGCYESIVPRTWEYTNCFHGQDGLN
DVGNYPVVDVEQELQPEHAVNAMYRLARANPGQVDFLLCGPLTNFANCIN
LYGNSFLTNIGRVYIMGGNIFGKGNVTKSAEFNFMMDPEAAHITLERLLE
PAIILPWEPCIDGEFDTTLDWRLNVLGAVDHPFIELLTRVERSMLEPRGF
VKWISCDSLLTAAYLFPDAMIAEQRQYYATVELSGIHTRGQMVLDHLRGR
KVDDIHGKKINVHIIRRLTSGATFRTIIAWTGFLPNADIAQLCAASFLDH

BO13688.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:06:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG11158-PA 344 CG11158-PA 1..344 1..344 1838 100 Plus
CG5418-PA 355 CG5418-PA 7..347 3..343 1220 67.5 Plus
CG12177-PC 362 CG12177-PC 25..325 6..301 583 41.2 Plus
CG12177-PB 362 CG12177-PB 25..325 6..301 583 41.2 Plus
CG12177-PA 362 CG12177-PA 25..325 6..301 583 41.2 Plus