Clone BO13689 Report

Search the DGRC for BO13689

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:136
Well:89
Vector:pDNR-Dual
Associated Gene/TranscriptRab23-RA
Protein status:BO13689.pep: validated full length
Sequenced Size:838

Clone Sequence Records

BO13689.3prime Sequence

797 bp (749 high quality bases) assembled on 2006-05-08

> BO13689.3prime
ATGGTCTAGAAAGCTTGCCAATATTCCGCATTTCTTGAGCACTATCTTTC
GCTTTCGGGCCACGCTGGAGCCATGGCCCTTCTTCGCCGGACGGAGGACG
ATGGTGCCGCTGCTGGACTTTGTGAAGGTCGGGCTGAAGGCGCTGATCGT
GGGCGTGCTGCTGTAAGGCGGATGGCTGGAGTTTTGCTGGTTTCCGGCCA
CCTGGTCGTAGCTCTGGGTCATTAGCTGATGGCACTTGGTGGCCAGGTAG
CGAAACACGGACGCCACGTTAATGTCCTCCTTGACGGAGGTGCGGATGAG
CCGGCAGTTGAGGAGCTTGGCCAGCGTCTCCACCTCGTCGGCCGTAACCA
CCGCCTGTTCGATAAGATCGATCTTGTTCTGCACAATCACTGTGGGTATC
TCGTTGCACTCGTTCTCCACCTTGCGCTTCCAATCCTTGATCGCGTCGAA
GGATGCTCGATCCGTCGTCGAAAAGACCAGGACGGAAGCCTGGGCGCCGC
GGTAGTACGCCTTTGTGATGCAGTCGAACTCCTCCTGGCCGGCGGTGTCC
CACAGCATGATGCGCACATCCTCGCCGTCGATCTCGATCTGTCGCTCTAG
GAAGTCCACTCCAATCGTTTTCTTGTAGTCCTTCGTGAAAATGCCTTTGC
AATAGCGCTGGATCATTGATGACTTGCCAACGCCGCCATTTCCAACAATG
ACCACTTTAATGGCCAGCTCGATATCATCTTCACGCATGCTGGTGTAGTT
GTACTGCGCCTGGGAGTGGGTCTGCAGAACGGACGCAGCAGCACCGC

BO13689.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:09:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG2108-PA 807 Rab23-RA 26..804 797..19 3895 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 14:46:29
Subject Length Description Subject Range Query Range Score Percent Strand
Rab23-RA 2267 CG2108-RA 309..1087 797..19 3895 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 14:46:25
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5681234..5681918 19..703 3425 100 Plus
3R 32079331 3R 5682620..5682716 701..797 485 100 Plus
Blast to na_te.dros performed on 2015-02-10 14:46:27 has no hits.

BO13689.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:10:18 Download gff for BO13689.3prime
Subject Subject Range Query Range Percent Splice Strand
Rab23-PA 26..807 16..797 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:58:49 Download gff for BO13689.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2108-PA 26..807 16..797 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:51:45 Download gff for BO13689.3prime
Subject Subject Range Query Range Percent Splice Strand
Rab23-RA 309..1087 19..797 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:47:55 Download gff for BO13689.3prime
Subject Subject Range Query Range Percent Splice Strand
Rab23-RA 309..1087 19..797 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 17:47:55 Download gff for BO13689.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 5681234..5681917 19..702 100 <- Plus
3R 5682622..5682716 703..797 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:51:45 Download gff for BO13689.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1506956..1507639 19..702 100 <- Plus
arm_3R 1508344..1508438 703..797 100   Plus

BO13689.5prime Sequence

788 bp (752 high quality bases) assembled on 2006-05-08

> BO13689.5prime
GAAGTTATCAGTCGACATGCGTCTAATCCAAACGGCAACCGGCGGTGCTG
CTGCGTCCGTTCTGCAGACCCACTCCCAGGCGCAGTACAACTACACCAGC
ATGCGTGAAGATGATATCGAGCTGGCCATTAAAGTGGTCATTGTTGGAAA
TGGCGGCGTTGGCAAGTCATCAATGATCCAGCGCTATTGCAAAGGCATTT
TCACGAAGGACTACAAGAAAACGATTGGAGTGGACTTCCTAGAGCGACAG
ATCGAGATCGACGGCGAGGATGTGCGCATCATGCTGTGGGACACCGCCGG
CCAGGAGGAGTTCGACTGCATCACAAAGGCGTACTACCGCGGCGCCCAGG
CTTCCGTCCTGGTCTTTTCGACGACGGATCGAGCATCCTTCGACGCGATC
AAGGATTGGAAGCGCAAGGTGGAGAACGAGTGCAACGAGATACCCACAGT
GATTGTGCAGAACAAGATCGATCTTATCGAACAGGCGGTGGTTACGGCCG
ACGAGGTGGAGACGCTGGCCAAGCTCCTCAACTGCCGGCTCATCCGCACC
TCCGTCAAGGAGGACATTAACGTGGCGTCCGTGTTTCGCTACCTGGCCAC
CAAGTGCCATCAGCTAATGACCCAGAGCTACGACCAGGTGGCCGGAAACC
AGCAAAACTCCAGCCATCCGCCTTACAGCAGCACGCCCACGATCAGCGCC
TTCAGCCCGACCTTCACAAAGTCCAGCAGCGGCACCATCGTCCTCCGTCC
GGCGAAGAAGGGCCATGGCTCCAGCGTGGCCCGAAAGC

BO13689.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:09:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG2108-PA 807 Rab23-RA 1..772 17..788 3860 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:18:00
Subject Length Description Subject Range Query Range Score Percent Strand
Rab23-RA 2267 CG2108-RA 284..1055 17..788 3860 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:17:54
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5681266..5681918 788..136 3265 100 Minus
3R 32079331 3R 5682620..5682741 138..17 610 100 Minus
Blast to na_te.dros performed on 2015-02-12 01:17:57 has no hits.

BO13689.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:10:19 Download gff for BO13689.5prime
Subject Subject Range Query Range Percent Splice Strand
Rab23-PA 1..772 17..788 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:58:50 Download gff for BO13689.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2108-PA 1..772 17..788 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 19:38:20 Download gff for BO13689.5prime
Subject Subject Range Query Range Percent Splice Strand
Rab23-RA 284..1055 17..788 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:27:02 Download gff for BO13689.5prime
Subject Subject Range Query Range Percent Splice Strand
Rab23-RA 284..1055 17..788 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 05:27:02 Download gff for BO13689.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 5681266..5681917 137..788 100 <- Minus
3R 5682622..5682741 17..136 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 19:38:20 Download gff for BO13689.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1506988..1507639 137..788 100 <- Minus
arm_3R 1508344..1508463 17..136 100   Minus

BO13689.complete Sequence

838 bp assembled on 2006-10-11

GenBank Submission: FJ632909

> BO13689.complete
GAAGTTATCAGTCGACATGCGTCTAATCCAAACGGCAACCGGCGGTGCTG
CTGCGTCCGTTCTGCAGACCCACTCCCAGGCGCAGTACAACTACACCAGC
ATGCGTGAAGATGATATCGAGCTGGCCATTAAAGTGGTCATTGTTGGAAA
TGGCGGCGTTGGCAAGTCATCAATGATCCAGCGCTATTGCAAAGGCATTT
TCACGAAGGACTACAAGAAAACGATTGGAGTGGACTTCCTAGAGCGACAG
ATCGAGATCGACGGCGAGGATGTGCGCATCATGCTGTGGGACACCGCCGG
CCAGGAGGAGTTCGACTGCATCACAAAGGCGTACTACCGCGGCGCCCAGG
CTTCCGTCCTGGTCTTTTCGACGACGGATCGAGCATCCTTCGACGCGATC
AAGGATTGGAAGCGCAAGGTGGAGAACGAGTGCAACGAGATACCCACAGT
GATTGTGCAGAACAAGATCGATCTTATCGAACAGGCGGTGGTTACGGCCG
ACGAGGTGGAGACGCTGGCCAAGCTCCTCAACTGCCGGCTCATCCGCACC
TCCGTCAAGGAGGACATTAACGTGGCGTCCGTGTTTCGCTACCTGGCCAC
CAAGTGCCATCAGCTAATGACCCAGAGCTACGACCAGGTGGCCGGAAACC
AGCAAAACTCCAGCCATCCGCCTTACAGCAGCACGCCCACGATCAGCGCC
TTCAGCCCGACCTTCACAAAGTCCAGCAGCGGCACCATCGTCCTCCGTCC
GGCGAAGAAGGGCCATGGCTCCAGCGTGGCCCGAAAGCGAAAGATAGTGC
TCAAGAAATGCGGAATATTGGCAAGCTTTCTAGACCAT

BO13689.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:49:28
Subject Length Description Subject Range Query Range Score Percent Strand
Rab23-RA 807 CG2108-PA 1..804 17..820 4020 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:49:29
Subject Length Description Subject Range Query Range Score Percent Strand
Rab23-RA 2267 CG2108-RA 284..1087 17..820 4020 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:49:25
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5681234..5681918 820..136 3425 100 Minus
3R 32079331 3R 5682620..5682741 138..17 610 100 Minus
Blast to na_te.dros performed on 2014-11-28 00:49:27 has no hits.

BO13689.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:45:02 Download gff for BO13689.complete
Subject Subject Range Query Range Percent Splice Strand
Rab23-RA 1..807 17..823 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:59:00 Download gff for BO13689.complete
Subject Subject Range Query Range Percent Splice Strand
Rab23-RA 276..1079 17..820 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:32:12 Download gff for BO13689.complete
Subject Subject Range Query Range Percent Splice Strand
Rab23-RA 284..1087 17..822 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:45:02 Download gff for BO13689.complete
Subject Subject Range Query Range Percent Splice Strand
Rab23-RA 276..1079 17..820 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:38:40 Download gff for BO13689.complete
Subject Subject Range Query Range Percent Splice Strand
Rab23-RA 284..1087 17..822 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:38:40 Download gff for BO13689.complete
Subject Subject Range Query Range Percent Splice Strand
3R 5681231..5681917 137..822 99 <- Minus
3R 5682622..5682741 17..136 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:32:12 Download gff for BO13689.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1506953..1507639 137..822 99 <- Minus
arm_3R 1508344..1508463 17..136 100   Minus

BO13689.pep Sequence

Translation from 16 to 838

> BO13689.pep
MRLIQTATGGAAASVLQTHSQAQYNYTSMREDDIELAIKVVIVGNGGVGK
SSMIQRYCKGIFTKDYKKTIGVDFLERQIEIDGEDVRIMLWDTAGQEEFD
CITKAYYRGAQASVLVFSTTDRASFDAIKDWKRKVENECNEIPTVIVQNK
IDLIEQAVVTADEVETLAKLLNCRLIRTSVKEDINVASVFRYLATKCHQL
MTQSYDQVAGNQQNSSHPPYSSTPTISAFSPTFTKSSSGTIVLRPAKKGH
GSSVARKRKIVLKKCGILASFLDH

BO13689.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:06:25
Subject Length Description Subject Range Query Range Score Percent Strand
Rab23-PA 268 CG2108-PA 1..268 1..268 1363 100 Plus
Rab11-PA 214 CG5771-PA 4..206 30..228 332 34 Plus
Rab11-PB 214 CG5771-PB 4..206 30..228 332 34 Plus
Rab35-PB 201 CG9575-PB 10..180 39..207 331 37.4 Plus
Rab35-PD 201 CG9575-PD 10..180 39..207 331 37.4 Plus