Clone Sequence Records
BO13689.3prime Sequence
797 bp (749 high quality bases) assembled on 2006-05-08
> BO13689.3prime
ATGGTCTAGAAAGCTTGCCAATATTCCGCATTTCTTGAGCACTATCTTTC
GCTTTCGGGCCACGCTGGAGCCATGGCCCTTCTTCGCCGGACGGAGGACG
ATGGTGCCGCTGCTGGACTTTGTGAAGGTCGGGCTGAAGGCGCTGATCGT
GGGCGTGCTGCTGTAAGGCGGATGGCTGGAGTTTTGCTGGTTTCCGGCCA
CCTGGTCGTAGCTCTGGGTCATTAGCTGATGGCACTTGGTGGCCAGGTAG
CGAAACACGGACGCCACGTTAATGTCCTCCTTGACGGAGGTGCGGATGAG
CCGGCAGTTGAGGAGCTTGGCCAGCGTCTCCACCTCGTCGGCCGTAACCA
CCGCCTGTTCGATAAGATCGATCTTGTTCTGCACAATCACTGTGGGTATC
TCGTTGCACTCGTTCTCCACCTTGCGCTTCCAATCCTTGATCGCGTCGAA
GGATGCTCGATCCGTCGTCGAAAAGACCAGGACGGAAGCCTGGGCGCCGC
GGTAGTACGCCTTTGTGATGCAGTCGAACTCCTCCTGGCCGGCGGTGTCC
CACAGCATGATGCGCACATCCTCGCCGTCGATCTCGATCTGTCGCTCTAG
GAAGTCCACTCCAATCGTTTTCTTGTAGTCCTTCGTGAAAATGCCTTTGC
AATAGCGCTGGATCATTGATGACTTGCCAACGCCGCCATTTCCAACAATG
ACCACTTTAATGGCCAGCTCGATATCATCTTCACGCATGCTGGTGTAGTT
GTACTGCGCCTGGGAGTGGGTCTGCAGAACGGACGCAGCAGCACCGC
BO13689.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:09:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2108-PA | 807 | Rab23-RA | 26..804 | 797..19 | 3895 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 14:46:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rab23-RA | 2267 | CG2108-RA | 309..1087 | 797..19 | 3895 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 14:46:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 5681234..5681918 | 19..703 | 3425 | 100 | Plus |
3R | 32079331 | 3R | 5682620..5682716 | 701..797 | 485 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 14:46:27 has no hits.
BO13689.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:10:18 Download gff for
BO13689.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab23-PA | 26..807 | 16..797 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:58:49 Download gff for
BO13689.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2108-PA | 26..807 | 16..797 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:51:45 Download gff for
BO13689.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab23-RA | 309..1087 | 19..797 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:47:55 Download gff for
BO13689.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab23-RA | 309..1087 | 19..797 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 17:47:55 Download gff for
BO13689.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 5681234..5681917 | 19..702 | 100 | <- | Plus |
3R | 5682622..5682716 | 703..797 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:51:45 Download gff for
BO13689.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 1506956..1507639 | 19..702 | 100 | <- | Plus |
arm_3R | 1508344..1508438 | 703..797 | 100 | | Plus |
BO13689.5prime Sequence
788 bp (752 high quality bases) assembled on 2006-05-08
> BO13689.5prime
GAAGTTATCAGTCGACATGCGTCTAATCCAAACGGCAACCGGCGGTGCTG
CTGCGTCCGTTCTGCAGACCCACTCCCAGGCGCAGTACAACTACACCAGC
ATGCGTGAAGATGATATCGAGCTGGCCATTAAAGTGGTCATTGTTGGAAA
TGGCGGCGTTGGCAAGTCATCAATGATCCAGCGCTATTGCAAAGGCATTT
TCACGAAGGACTACAAGAAAACGATTGGAGTGGACTTCCTAGAGCGACAG
ATCGAGATCGACGGCGAGGATGTGCGCATCATGCTGTGGGACACCGCCGG
CCAGGAGGAGTTCGACTGCATCACAAAGGCGTACTACCGCGGCGCCCAGG
CTTCCGTCCTGGTCTTTTCGACGACGGATCGAGCATCCTTCGACGCGATC
AAGGATTGGAAGCGCAAGGTGGAGAACGAGTGCAACGAGATACCCACAGT
GATTGTGCAGAACAAGATCGATCTTATCGAACAGGCGGTGGTTACGGCCG
ACGAGGTGGAGACGCTGGCCAAGCTCCTCAACTGCCGGCTCATCCGCACC
TCCGTCAAGGAGGACATTAACGTGGCGTCCGTGTTTCGCTACCTGGCCAC
CAAGTGCCATCAGCTAATGACCCAGAGCTACGACCAGGTGGCCGGAAACC
AGCAAAACTCCAGCCATCCGCCTTACAGCAGCACGCCCACGATCAGCGCC
TTCAGCCCGACCTTCACAAAGTCCAGCAGCGGCACCATCGTCCTCCGTCC
GGCGAAGAAGGGCCATGGCTCCAGCGTGGCCCGAAAGC
BO13689.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:09:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2108-PA | 807 | Rab23-RA | 1..772 | 17..788 | 3860 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:18:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rab23-RA | 2267 | CG2108-RA | 284..1055 | 17..788 | 3860 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:17:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 5681266..5681918 | 788..136 | 3265 | 100 | Minus |
3R | 32079331 | 3R | 5682620..5682741 | 138..17 | 610 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 01:17:57 has no hits.
BO13689.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:10:19 Download gff for
BO13689.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab23-PA | 1..772 | 17..788 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:58:50 Download gff for
BO13689.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2108-PA | 1..772 | 17..788 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 19:38:20 Download gff for
BO13689.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab23-RA | 284..1055 | 17..788 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:27:02 Download gff for
BO13689.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab23-RA | 284..1055 | 17..788 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 05:27:02 Download gff for
BO13689.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 5681266..5681917 | 137..788 | 100 | <- | Minus |
3R | 5682622..5682741 | 17..136 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 19:38:20 Download gff for
BO13689.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 1506988..1507639 | 137..788 | 100 | <- | Minus |
arm_3R | 1508344..1508463 | 17..136 | 100 | | Minus |
BO13689.complete Sequence
838 bp assembled on 2006-10-11
GenBank Submission: FJ632909
> BO13689.complete
GAAGTTATCAGTCGACATGCGTCTAATCCAAACGGCAACCGGCGGTGCTG
CTGCGTCCGTTCTGCAGACCCACTCCCAGGCGCAGTACAACTACACCAGC
ATGCGTGAAGATGATATCGAGCTGGCCATTAAAGTGGTCATTGTTGGAAA
TGGCGGCGTTGGCAAGTCATCAATGATCCAGCGCTATTGCAAAGGCATTT
TCACGAAGGACTACAAGAAAACGATTGGAGTGGACTTCCTAGAGCGACAG
ATCGAGATCGACGGCGAGGATGTGCGCATCATGCTGTGGGACACCGCCGG
CCAGGAGGAGTTCGACTGCATCACAAAGGCGTACTACCGCGGCGCCCAGG
CTTCCGTCCTGGTCTTTTCGACGACGGATCGAGCATCCTTCGACGCGATC
AAGGATTGGAAGCGCAAGGTGGAGAACGAGTGCAACGAGATACCCACAGT
GATTGTGCAGAACAAGATCGATCTTATCGAACAGGCGGTGGTTACGGCCG
ACGAGGTGGAGACGCTGGCCAAGCTCCTCAACTGCCGGCTCATCCGCACC
TCCGTCAAGGAGGACATTAACGTGGCGTCCGTGTTTCGCTACCTGGCCAC
CAAGTGCCATCAGCTAATGACCCAGAGCTACGACCAGGTGGCCGGAAACC
AGCAAAACTCCAGCCATCCGCCTTACAGCAGCACGCCCACGATCAGCGCC
TTCAGCCCGACCTTCACAAAGTCCAGCAGCGGCACCATCGTCCTCCGTCC
GGCGAAGAAGGGCCATGGCTCCAGCGTGGCCCGAAAGCGAAAGATAGTGC
TCAAGAAATGCGGAATATTGGCAAGCTTTCTAGACCAT
BO13689.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:49:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rab23-RA | 807 | CG2108-PA | 1..804 | 17..820 | 4020 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:49:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rab23-RA | 2267 | CG2108-RA | 284..1087 | 17..820 | 4020 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:49:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 5681234..5681918 | 820..136 | 3425 | 100 | Minus |
3R | 32079331 | 3R | 5682620..5682741 | 138..17 | 610 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:49:27 has no hits.
BO13689.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:45:02 Download gff for
BO13689.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab23-RA | 1..807 | 17..823 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:59:00 Download gff for
BO13689.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab23-RA | 276..1079 | 17..820 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:32:12 Download gff for
BO13689.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab23-RA | 284..1087 | 17..822 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:45:02 Download gff for
BO13689.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab23-RA | 276..1079 | 17..820 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:38:40 Download gff for
BO13689.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab23-RA | 284..1087 | 17..822 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:38:40 Download gff for
BO13689.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 5681231..5681917 | 137..822 | 99 | <- | Minus |
3R | 5682622..5682741 | 17..136 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:32:12 Download gff for
BO13689.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 1506953..1507639 | 137..822 | 99 | <- | Minus |
arm_3R | 1508344..1508463 | 17..136 | 100 | | Minus |
BO13689.pep Sequence
Translation from 16 to 838
> BO13689.pep
MRLIQTATGGAAASVLQTHSQAQYNYTSMREDDIELAIKVVIVGNGGVGK
SSMIQRYCKGIFTKDYKKTIGVDFLERQIEIDGEDVRIMLWDTAGQEEFD
CITKAYYRGAQASVLVFSTTDRASFDAIKDWKRKVENECNEIPTVIVQNK
IDLIEQAVVTADEVETLAKLLNCRLIRTSVKEDINVASVFRYLATKCHQL
MTQSYDQVAGNQQNSSHPPYSSTPTISAFSPTFTKSSSGTIVLRPAKKGH
GSSVARKRKIVLKKCGILASFLDH
BO13689.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:06:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rab23-PA | 268 | CG2108-PA | 1..268 | 1..268 | 1363 | 100 | Plus |
Rab11-PA | 214 | CG5771-PA | 4..206 | 30..228 | 332 | 34 | Plus |
Rab11-PB | 214 | CG5771-PB | 4..206 | 30..228 | 332 | 34 | Plus |
Rab35-PB | 201 | CG9575-PB | 10..180 | 39..207 | 331 | 37.4 | Plus |
Rab35-PD | 201 | CG9575-PD | 10..180 | 39..207 | 331 | 37.4 | Plus |