Clone BO13690 Report

Search the DGRC for BO13690

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:136
Well:90
Vector:pDNR-Dual
Associated Gene/TranscriptCG2065-RA
Protein status:BO13690.pep: validated full length
Sequenced Size:934

Clone Sequence Records

BO13690.3prime Sequence

859 bp (695 high quality bases) assembled on 2006-05-08

> BO13690.3prime
ATGGTCTAGAAAGCTTGCATCAACTTTGGTTGAATTCACGCCGGTCCACT
TCTCGCTCTCCGCCCAGAGGAACTTTCCAGTCTTGTCGTCCTGGGCAGCT
GCGGACACTTCCTTTGGCTGGCAGTCGCTAAAGTAGAGCCCGGAAACATC
CTTTAGTGCAGGATCCAGGGCTGCGTAGAGAGTGGTCTGCGCTCCATTGC
GAGGGGTTTTGAAGAGTACCCACAGGAGGGGCTTGAGCAGTAGCTGTGCA
AAGGGGTGTTTCAGGAACTTCCAATTCCTCGACAGCTCCGTGTCCACGGC
ACCGGGATGTAGGGAGTTGGTTGTGACCCCCGTTCCCTCCAGGCGCTTGG
CCAATTCCCGGGTGAACAGGACGTTGGCCAGCTTGCTCTGACTATAGGCA
CCGATTCTGCTGTACGACTTTTCACTGTTTAGGTCGGCAGTTTTAATGAA
ACCTTGGGTGTGCACCAGGCTGGAAACGTTCACGATGCGACTGGGTGCAG
TTTTCTTCAATACGTCCAGCAGCAAGTGGGTGAGCAGGAAGTGTCCCATA
TGGTTGACTCCCAACTGCATTTCGAAGCCATCCTTGGTCAGTGTTCTGGG
ACAGTGCATAACTCCTGCATTGTTTATCAGGACATGAAGCTTATCCTGCT
CTTTCTTGAATCCAGCAGCGAATTTGCGAATGGATTCCAGCGAACTCAAG
TCCAGTTCTCGAGAGAATATGTTCTGGTTATTTGTCTCCCTGATAATATC
CTGGCGCGCCTTCTCGCACCGGTTCATATCCCGGCATGCCATGTACACAG
TGCCTCCTCGCTTGGCAATCTCCAGGACCGTCTCCTTGCCAATGCCCGTG
TTGGCACCG

BO13690.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:09:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG2065-PA 903 CG2065-RA 60..900 859..19 4205 100 Minus
CG2064-PA 993 CG2064-RA 205..335 801..671 230 87 Minus
CG2064-PA 993 CG2064-RA 616..662 390..344 210 97.8 Minus
CG2064-PA 993 CG2064-RA 147..178 859..828 160 100 Minus
CG3842-PA 1221 CG3842-RA 246..275 853..824 150 100 Minus
CG3842-PB 1221 CG3842-RB 246..275 853..824 150 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:43:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG2065-RB 1233 CG2065-RB 245..1085 859..19 4205 100 Minus
CG2065-RA 1204 CG2065-RA 216..1056 859..19 4205 100 Minus
CG2064-RA 1210 CG2064-RA 256..844 859..271 1130 79.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:42:55
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7664573..7664835 506..244 1315 100 Minus
2R 25286936 2R 7664896..7665121 244..19 1130 100 Minus
2R 25286936 2R 7664099..7664296 859..662 990 100 Minus
2R 25286936 2R 7664352..7664509 662..505 790 100 Minus
2R 25286936 2R 7666212..7666400 859..671 570 86.8 Minus
2R 25286936 2R 7666475..7666630 660..505 315 80.1 Minus
2R 25286936 2R 7666792..7666920 399..271 300 82.2 Minus
2R 25286936 2R 7662244..7662429 847..662 240 75.3 Minus
2R 25286936 2R 7655637..7655712 859..784 230 86.8 Minus
X 23542271 X 6342383..6342458 853..778 200 84.2 Minus
Blast to na_te.dros performed on 2015-02-10 22:43:00 has no hits.

BO13690.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:10:20 Download gff for BO13690.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2065-PA 60..903 15..859 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:58:52 Download gff for BO13690.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2065-PA 60..903 15..859 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 08:01:15 Download gff for BO13690.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2065-RA 216..1061 13..859 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:10:59 Download gff for BO13690.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2065-RA 216..1061 13..859 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:10:59 Download gff for BO13690.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 7664099..7664296 662..859 100 -> Minus
2R 7664353..7664509 505..661 100 -> Minus
2R 7664575..7664834 245..504 100 -> Minus
2R 7664896..7665126 13..244 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 08:01:15 Download gff for BO13690.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3551604..3551801 662..859 100 -> Minus
arm_2R 3551858..3552014 505..661 100 -> Minus
arm_2R 3552080..3552339 245..504 100 -> Minus
arm_2R 3552401..3552631 13..244 99   Minus

BO13690.5prime Sequence

812 bp (738 high quality bases) assembled on 2006-05-08

> BO13690.5prime
GAAGTTATCAGTCGACATGCAGGGCGGTCAGTTCACCAAGCAGACCGATG
AGACCGGCAAGGTGTTCATTGTCACCGGTGCCAACACGGGCATTGGCAAG
GAGACGGTCCTGGAGATTGCCAAGCGAGGAGGCACTGTGTACATGGCATG
CCGGGATATGAACCGGTGCGAGAAGGCGCGCCAGGATATTATCAGGGAGA
CAAATAACCAGAACATATTCTCTCGAGAACTGGACTTGAGTTCGCTGGAA
TCCATTCGCAAATTCGCTGCTGGATTCAAGAAAGAGCAGGATAAGCTTCA
TGTCCTGATAAACAATGCAGGAGTTATGCACTGTCCCAGAACACTGACCA
AGGATGGCTTCGAAATGCAGTTGGGAGTCAACCATATGGGACACTTCCTG
CTCACCCACTTGCTGCTGGACGTATTGAAGAAAACTGCACCCAGTCGCAT
CGTGAACGTTTCCAGCCTGGTGCACACCCAAGGTTTCATTAAAACTGCCG
ACCTAAACAGTGAAAAGTCGTACAGCAGAATCGGTGCCTATAGTCAGAGC
AAGCTGGCCAACGTCCTGTTCACCCGGGAATTGGCCAAGCGCCTGGAGGG
AACGGGGGTCACAACCAACTCCCTACATCCCGGTGCCGTGGACACGGAGC
TGTCGAGGAATTGGAAGTTCCTGAAACACCCCTTTGCACAGCTACTGCTC
AAGCCCCTCCTGTGGGTACTCTTCAAAACCCCTCGCAATGGAGCGCAGAC
CACTCTCTACGCAGCCCTGGATCCTGCACTAAAGGATGTTTCCGGGCTCT
ACTTTAGCGACT

BO13690.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:09:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG2065-PA 903 CG2065-RA 1..796 17..812 3980 100 Plus
CG2064-PA 993 CG2064-RA 115..178 44..107 245 95.3 Plus
CG2064-PA 993 CG2064-RA 205..335 134..264 230 87 Plus
CG30491-PA 996 CG30491-RA 125..185 48..108 230 95 Plus
CG2064-PA 993 CG2064-RA 616..662 545..591 210 97.8 Plus
CG3842-PA 1221 CG3842-RA 246..275 82..111 150 100 Plus
CG3842-PB 1221 CG3842-RB 246..275 82..111 150 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:32:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG2065-RB 1233 CG2065-RB 184..981 15..812 3990 100 Plus
CG2065-RA 1204 CG2065-RA 155..952 15..812 3990 100 Plus
CG2064-RA 1210 CG2064-RA 195..844 15..664 1270 79.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:32:50
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7664573..7664835 429..691 1315 100 Plus
2R 25286936 2R 7664038..7664296 15..273 1295 100 Plus
2R 25286936 2R 7664352..7664509 273..430 790 100 Plus
2R 25286936 2R 7666151..7666400 15..264 710 85.6 Plus
2R 25286936 2R 7664896..7665017 691..812 610 100 Plus
2R 25286936 2R 7655578..7655712 17..151 435 88.1 Plus
2R 25286936 2R 7662173..7662429 17..273 340 75.5 Plus
2R 25286936 2R 7666475..7666630 275..430 315 80.1 Plus
2R 25286936 2R 7666792..7666920 536..664 300 82.2 Plus
X 23542271 X 6342357..6342458 56..157 255 83.3 Plus
2R 25286936 2R 7657419..7657555 17..153 250 78.8 Plus
Blast to na_te.dros performed on 2015-02-11 16:32:54 has no hits.

BO13690.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:10:21 Download gff for BO13690.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2065-PA 1..796 17..812 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:58:53 Download gff for BO13690.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2065-PA 1..796 17..812 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:03:32 Download gff for BO13690.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2065-RA 155..952 15..812 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:51:16 Download gff for BO13690.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2065-RA 155..952 15..812 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:51:16 Download gff for BO13690.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 7664575..7664834 431..690 100 -> Plus
2R 7664896..7665017 691..812 100   Plus
2R 7664353..7664509 274..430 100 -> Plus
2R 7664038..7664296 15..273 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:03:32 Download gff for BO13690.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3551543..3551801 15..273 100 -> Plus
arm_2R 3551858..3552014 274..430 100 -> Plus
arm_2R 3552080..3552339 431..690 100 -> Plus
arm_2R 3552401..3552522 691..812 100   Plus

BO13690.complete Sequence

934 bp assembled on 2006-10-11

GenBank Submission: FJ638718

> BO13690.complete
GAAGTTATCAGTCGACATGCAGGGCGGTCAGTTCACCAAGCAGACCGATG
AGACCGGCAAGGTGTTCATTGTCACCGGTGCCAACACGGGCATTGGCAAG
GAGACGGTCCTGGAGATTGCCAAGCGAGGAGGCACTGTGTACATGGCATG
CCGGGATATGAACCGGTGCGAGAAGGCGCGCCAGGATATTATCAGGGAGA
CAAATAACCAGAACATATTCTCTCGAGAACTGGACTTGAGTTCGCTGGAA
TCCATTCGCAAATTCGCTGCTGGATTCAAGAAAGAGCAGGATAAGCTTCA
TGTCCTGATAAACAATGCAGGAGTTATGCACTGTCCCAGAACACTGACCA
AGGATGGCTTCGAAATGCAGTTGGGAGTCAACCATATGGGACACTTCCTG
CTCACCCACTTGCTGCTGGACGTATTGAAGAAAACTGCACCCAGTCGCAT
CGTGAACGTTTCCAGCCTGGTGCACACCCAAGGTTTCATTAAAACTGCCG
ACCTAAACAGTGAAAAGTCGTACAGCAGAATCGGTGCCTATAGTCAGAGC
AAGCTGGCCAACGTCCTGTTCACCCGGGAATTGGCCAAGCGCCTGGAGGG
AACGGGGGTCACAACCAACTCCCTACATCCCGGTGCCGTGGACACGGAGC
TGTCGAGGAATTGGAAGTTCCTGAAACACCCCTTTGCACAGCTACTGCTC
AAGCCCCTCCTGTGGGTACTCTTCAAAACCCCTCGCAATGGAGCGCAGAC
CACTCTCTACGCAGCCCTGGATCCTGCACTAAAGGATGTTTCCGGGCTCT
ACTTTAGCGACTGCCAGCCAAAGGAAGTGTCCGCAGCTGCCCAGGACGAC
AAGACTGGAAAGTTCCTCTGGGCGGAGAGCGAGAAGTGGACCGGCGTGAA
TTCAACCAAAGTTGATGCAAGCTTTCTAGACCAT

BO13690.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:00:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG2065-RB 903 CG2065-PB 1..900 17..916 4500 100 Plus
CG2065-RA 903 CG2065-PA 1..900 17..916 4500 100 Plus
CG2064-RA 993 CG2064-PA 86..735 15..664 1255 79.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:00:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG2065-RB 1233 CG2065-RB 184..1085 15..916 4510 100 Plus
CG2065-RA 1204 CG2065-RA 155..1056 15..916 4510 100 Plus
CG2064-RA 1210 CG2064-RA 195..844 15..664 1255 79.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:00:38
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7664573..7664835 429..691 1315 100 Plus
2R 25286936 2R 7664038..7664296 15..273 1295 100 Plus
2R 25286936 2R 7664896..7665121 691..916 1130 100 Plus
2R 25286936 2R 7664352..7664509 273..430 790 100 Plus
2R 25286936 2R 7666151..7666400 15..264 710 85.6 Plus
2R 25286936 2R 7655578..7655712 17..151 435 88.1 Plus
2R 25286936 2R 7662173..7662429 17..273 340 75.5 Plus
2R 25286936 2R 7666475..7666630 275..430 315 80.1 Plus
2R 25286936 2R 7666792..7666920 536..664 300 82.2 Plus
X 23542271 X 6342357..6342458 56..157 255 83.3 Plus
2R 25286936 2R 7657419..7657555 17..153 250 78.8 Plus
Blast to na_te.dros performed on 2014-11-26 16:00:40 has no hits.

BO13690.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:45:04 Download gff for BO13690.complete
Subject Subject Range Query Range Percent Splice Strand
CG2065-RA 1..903 17..920 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:59:01 Download gff for BO13690.complete
Subject Subject Range Query Range Percent Splice Strand
CG2065-RA 155..1061 15..922 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:50:04 Download gff for BO13690.complete
Subject Subject Range Query Range Percent Splice Strand
CG2065-RA 157..1056 17..918 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:45:04 Download gff for BO13690.complete
Subject Subject Range Query Range Percent Splice Strand
CG2065-RA 155..1061 15..922 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:09:08 Download gff for BO13690.complete
Subject Subject Range Query Range Percent Splice Strand
CG2065-RA 157..1056 17..918 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:09:08 Download gff for BO13690.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7664040..7664296 17..273 100 -> Plus
2R 7664353..7664509 274..430 100 -> Plus
2R 7664575..7664834 431..690 100 -> Plus
2R 7664896..7665121 691..918 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:50:04 Download gff for BO13690.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3552401..3552626 691..918 99   Plus
arm_2R 3551545..3551801 17..273 100 -> Plus
arm_2R 3551858..3552014 274..430 100 -> Plus
arm_2R 3552080..3552339 431..690 100 -> Plus

BO13690.pep Sequence

Translation from 16 to 934

> BO13690.pep
MQGGQFTKQTDETGKVFIVTGANTGIGKETVLEIAKRGGTVYMACRDMNR
CEKARQDIIRETNNQNIFSRELDLSSLESIRKFAAGFKKEQDKLHVLINN
AGVMHCPRTLTKDGFEMQLGVNHMGHFLLTHLLLDVLKKTAPSRIVNVSS
LVHTQGFIKTADLNSEKSYSRIGAYSQSKLANVLFTRELAKRLEGTGVTT
NSLHPGAVDTELSRNWKFLKHPFAQLLLKPLLWVLFKTPRNGAQTTLYAA
LDPALKDVSGLYFSDCQPKEVSAAAQDDKTGKFLWAESEKWTGVNSTKVD
ASFLDH

BO13690.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:06:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG2065-PB 300 CG2065-PB 1..300 1..300 1551 100 Plus
CG2065-PA 300 CG2065-PA 1..300 1..300 1551 100 Plus
CG2064-PA 330 CG2064-PA 30..329 1..300 1217 76.3 Plus
CG2070-PB 325 CG2070-PB 30..324 1..295 1105 71.2 Plus
CG2070-PA 325 CG2070-PA 30..324 1..295 1105 71.2 Plus