Clone Sequence Records
BO13690.3prime Sequence
859 bp (695 high quality bases) assembled on 2006-05-08
> BO13690.3prime
ATGGTCTAGAAAGCTTGCATCAACTTTGGTTGAATTCACGCCGGTCCACT
TCTCGCTCTCCGCCCAGAGGAACTTTCCAGTCTTGTCGTCCTGGGCAGCT
GCGGACACTTCCTTTGGCTGGCAGTCGCTAAAGTAGAGCCCGGAAACATC
CTTTAGTGCAGGATCCAGGGCTGCGTAGAGAGTGGTCTGCGCTCCATTGC
GAGGGGTTTTGAAGAGTACCCACAGGAGGGGCTTGAGCAGTAGCTGTGCA
AAGGGGTGTTTCAGGAACTTCCAATTCCTCGACAGCTCCGTGTCCACGGC
ACCGGGATGTAGGGAGTTGGTTGTGACCCCCGTTCCCTCCAGGCGCTTGG
CCAATTCCCGGGTGAACAGGACGTTGGCCAGCTTGCTCTGACTATAGGCA
CCGATTCTGCTGTACGACTTTTCACTGTTTAGGTCGGCAGTTTTAATGAA
ACCTTGGGTGTGCACCAGGCTGGAAACGTTCACGATGCGACTGGGTGCAG
TTTTCTTCAATACGTCCAGCAGCAAGTGGGTGAGCAGGAAGTGTCCCATA
TGGTTGACTCCCAACTGCATTTCGAAGCCATCCTTGGTCAGTGTTCTGGG
ACAGTGCATAACTCCTGCATTGTTTATCAGGACATGAAGCTTATCCTGCT
CTTTCTTGAATCCAGCAGCGAATTTGCGAATGGATTCCAGCGAACTCAAG
TCCAGTTCTCGAGAGAATATGTTCTGGTTATTTGTCTCCCTGATAATATC
CTGGCGCGCCTTCTCGCACCGGTTCATATCCCGGCATGCCATGTACACAG
TGCCTCCTCGCTTGGCAATCTCCAGGACCGTCTCCTTGCCAATGCCCGTG
TTGGCACCG
BO13690.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:09:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2065-PA | 903 | CG2065-RA | 60..900 | 859..19 | 4205 | 100 | Minus |
CG2064-PA | 993 | CG2064-RA | 205..335 | 801..671 | 230 | 87 | Minus |
CG2064-PA | 993 | CG2064-RA | 616..662 | 390..344 | 210 | 97.8 | Minus |
CG2064-PA | 993 | CG2064-RA | 147..178 | 859..828 | 160 | 100 | Minus |
CG3842-PA | 1221 | CG3842-RA | 246..275 | 853..824 | 150 | 100 | Minus |
CG3842-PB | 1221 | CG3842-RB | 246..275 | 853..824 | 150 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:43:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2065-RB | 1233 | CG2065-RB | 245..1085 | 859..19 | 4205 | 100 | Minus |
CG2065-RA | 1204 | CG2065-RA | 216..1056 | 859..19 | 4205 | 100 | Minus |
CG2064-RA | 1210 | CG2064-RA | 256..844 | 859..271 | 1130 | 79.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:42:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 7664573..7664835 | 506..244 | 1315 | 100 | Minus |
2R | 25286936 | 2R | 7664896..7665121 | 244..19 | 1130 | 100 | Minus |
2R | 25286936 | 2R | 7664099..7664296 | 859..662 | 990 | 100 | Minus |
2R | 25286936 | 2R | 7664352..7664509 | 662..505 | 790 | 100 | Minus |
2R | 25286936 | 2R | 7666212..7666400 | 859..671 | 570 | 86.8 | Minus |
2R | 25286936 | 2R | 7666475..7666630 | 660..505 | 315 | 80.1 | Minus |
2R | 25286936 | 2R | 7666792..7666920 | 399..271 | 300 | 82.2 | Minus |
2R | 25286936 | 2R | 7662244..7662429 | 847..662 | 240 | 75.3 | Minus |
2R | 25286936 | 2R | 7655637..7655712 | 859..784 | 230 | 86.8 | Minus |
X | 23542271 | X | 6342383..6342458 | 853..778 | 200 | 84.2 | Minus |
Blast to na_te.dros performed on 2015-02-10 22:43:00 has no hits.
BO13690.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:10:20 Download gff for
BO13690.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2065-PA | 60..903 | 15..859 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:58:52 Download gff for
BO13690.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2065-PA | 60..903 | 15..859 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 08:01:15 Download gff for
BO13690.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2065-RA | 216..1061 | 13..859 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:10:59 Download gff for
BO13690.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2065-RA | 216..1061 | 13..859 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:10:59 Download gff for
BO13690.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 7664099..7664296 | 662..859 | 100 | -> | Minus |
2R | 7664353..7664509 | 505..661 | 100 | -> | Minus |
2R | 7664575..7664834 | 245..504 | 100 | -> | Minus |
2R | 7664896..7665126 | 13..244 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 08:01:15 Download gff for
BO13690.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 3551604..3551801 | 662..859 | 100 | -> | Minus |
arm_2R | 3551858..3552014 | 505..661 | 100 | -> | Minus |
arm_2R | 3552080..3552339 | 245..504 | 100 | -> | Minus |
arm_2R | 3552401..3552631 | 13..244 | 99 | | Minus |
BO13690.5prime Sequence
812 bp (738 high quality bases) assembled on 2006-05-08
> BO13690.5prime
GAAGTTATCAGTCGACATGCAGGGCGGTCAGTTCACCAAGCAGACCGATG
AGACCGGCAAGGTGTTCATTGTCACCGGTGCCAACACGGGCATTGGCAAG
GAGACGGTCCTGGAGATTGCCAAGCGAGGAGGCACTGTGTACATGGCATG
CCGGGATATGAACCGGTGCGAGAAGGCGCGCCAGGATATTATCAGGGAGA
CAAATAACCAGAACATATTCTCTCGAGAACTGGACTTGAGTTCGCTGGAA
TCCATTCGCAAATTCGCTGCTGGATTCAAGAAAGAGCAGGATAAGCTTCA
TGTCCTGATAAACAATGCAGGAGTTATGCACTGTCCCAGAACACTGACCA
AGGATGGCTTCGAAATGCAGTTGGGAGTCAACCATATGGGACACTTCCTG
CTCACCCACTTGCTGCTGGACGTATTGAAGAAAACTGCACCCAGTCGCAT
CGTGAACGTTTCCAGCCTGGTGCACACCCAAGGTTTCATTAAAACTGCCG
ACCTAAACAGTGAAAAGTCGTACAGCAGAATCGGTGCCTATAGTCAGAGC
AAGCTGGCCAACGTCCTGTTCACCCGGGAATTGGCCAAGCGCCTGGAGGG
AACGGGGGTCACAACCAACTCCCTACATCCCGGTGCCGTGGACACGGAGC
TGTCGAGGAATTGGAAGTTCCTGAAACACCCCTTTGCACAGCTACTGCTC
AAGCCCCTCCTGTGGGTACTCTTCAAAACCCCTCGCAATGGAGCGCAGAC
CACTCTCTACGCAGCCCTGGATCCTGCACTAAAGGATGTTTCCGGGCTCT
ACTTTAGCGACT
BO13690.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:09:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2065-PA | 903 | CG2065-RA | 1..796 | 17..812 | 3980 | 100 | Plus |
CG2064-PA | 993 | CG2064-RA | 115..178 | 44..107 | 245 | 95.3 | Plus |
CG2064-PA | 993 | CG2064-RA | 205..335 | 134..264 | 230 | 87 | Plus |
CG30491-PA | 996 | CG30491-RA | 125..185 | 48..108 | 230 | 95 | Plus |
CG2064-PA | 993 | CG2064-RA | 616..662 | 545..591 | 210 | 97.8 | Plus |
CG3842-PA | 1221 | CG3842-RA | 246..275 | 82..111 | 150 | 100 | Plus |
CG3842-PB | 1221 | CG3842-RB | 246..275 | 82..111 | 150 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:32:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2065-RB | 1233 | CG2065-RB | 184..981 | 15..812 | 3990 | 100 | Plus |
CG2065-RA | 1204 | CG2065-RA | 155..952 | 15..812 | 3990 | 100 | Plus |
CG2064-RA | 1210 | CG2064-RA | 195..844 | 15..664 | 1270 | 79.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:32:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 7664573..7664835 | 429..691 | 1315 | 100 | Plus |
2R | 25286936 | 2R | 7664038..7664296 | 15..273 | 1295 | 100 | Plus |
2R | 25286936 | 2R | 7664352..7664509 | 273..430 | 790 | 100 | Plus |
2R | 25286936 | 2R | 7666151..7666400 | 15..264 | 710 | 85.6 | Plus |
2R | 25286936 | 2R | 7664896..7665017 | 691..812 | 610 | 100 | Plus |
2R | 25286936 | 2R | 7655578..7655712 | 17..151 | 435 | 88.1 | Plus |
2R | 25286936 | 2R | 7662173..7662429 | 17..273 | 340 | 75.5 | Plus |
2R | 25286936 | 2R | 7666475..7666630 | 275..430 | 315 | 80.1 | Plus |
2R | 25286936 | 2R | 7666792..7666920 | 536..664 | 300 | 82.2 | Plus |
X | 23542271 | X | 6342357..6342458 | 56..157 | 255 | 83.3 | Plus |
2R | 25286936 | 2R | 7657419..7657555 | 17..153 | 250 | 78.8 | Plus |
Blast to na_te.dros performed on 2015-02-11 16:32:54 has no hits.
BO13690.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:10:21 Download gff for
BO13690.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2065-PA | 1..796 | 17..812 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:58:53 Download gff for
BO13690.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2065-PA | 1..796 | 17..812 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:03:32 Download gff for
BO13690.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2065-RA | 155..952 | 15..812 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:51:16 Download gff for
BO13690.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2065-RA | 155..952 | 15..812 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:51:16 Download gff for
BO13690.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 7664575..7664834 | 431..690 | 100 | -> | Plus |
2R | 7664896..7665017 | 691..812 | 100 | | Plus |
2R | 7664353..7664509 | 274..430 | 100 | -> | Plus |
2R | 7664038..7664296 | 15..273 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:03:32 Download gff for
BO13690.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 3551543..3551801 | 15..273 | 100 | -> | Plus |
arm_2R | 3551858..3552014 | 274..430 | 100 | -> | Plus |
arm_2R | 3552080..3552339 | 431..690 | 100 | -> | Plus |
arm_2R | 3552401..3552522 | 691..812 | 100 | | Plus |
BO13690.complete Sequence
934 bp assembled on 2006-10-11
GenBank Submission: FJ638718
> BO13690.complete
GAAGTTATCAGTCGACATGCAGGGCGGTCAGTTCACCAAGCAGACCGATG
AGACCGGCAAGGTGTTCATTGTCACCGGTGCCAACACGGGCATTGGCAAG
GAGACGGTCCTGGAGATTGCCAAGCGAGGAGGCACTGTGTACATGGCATG
CCGGGATATGAACCGGTGCGAGAAGGCGCGCCAGGATATTATCAGGGAGA
CAAATAACCAGAACATATTCTCTCGAGAACTGGACTTGAGTTCGCTGGAA
TCCATTCGCAAATTCGCTGCTGGATTCAAGAAAGAGCAGGATAAGCTTCA
TGTCCTGATAAACAATGCAGGAGTTATGCACTGTCCCAGAACACTGACCA
AGGATGGCTTCGAAATGCAGTTGGGAGTCAACCATATGGGACACTTCCTG
CTCACCCACTTGCTGCTGGACGTATTGAAGAAAACTGCACCCAGTCGCAT
CGTGAACGTTTCCAGCCTGGTGCACACCCAAGGTTTCATTAAAACTGCCG
ACCTAAACAGTGAAAAGTCGTACAGCAGAATCGGTGCCTATAGTCAGAGC
AAGCTGGCCAACGTCCTGTTCACCCGGGAATTGGCCAAGCGCCTGGAGGG
AACGGGGGTCACAACCAACTCCCTACATCCCGGTGCCGTGGACACGGAGC
TGTCGAGGAATTGGAAGTTCCTGAAACACCCCTTTGCACAGCTACTGCTC
AAGCCCCTCCTGTGGGTACTCTTCAAAACCCCTCGCAATGGAGCGCAGAC
CACTCTCTACGCAGCCCTGGATCCTGCACTAAAGGATGTTTCCGGGCTCT
ACTTTAGCGACTGCCAGCCAAAGGAAGTGTCCGCAGCTGCCCAGGACGAC
AAGACTGGAAAGTTCCTCTGGGCGGAGAGCGAGAAGTGGACCGGCGTGAA
TTCAACCAAAGTTGATGCAAGCTTTCTAGACCAT
BO13690.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:00:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2065-RB | 903 | CG2065-PB | 1..900 | 17..916 | 4500 | 100 | Plus |
CG2065-RA | 903 | CG2065-PA | 1..900 | 17..916 | 4500 | 100 | Plus |
CG2064-RA | 993 | CG2064-PA | 86..735 | 15..664 | 1255 | 79.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:00:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2065-RB | 1233 | CG2065-RB | 184..1085 | 15..916 | 4510 | 100 | Plus |
CG2065-RA | 1204 | CG2065-RA | 155..1056 | 15..916 | 4510 | 100 | Plus |
CG2064-RA | 1210 | CG2064-RA | 195..844 | 15..664 | 1255 | 79.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:00:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 7664573..7664835 | 429..691 | 1315 | 100 | Plus |
2R | 25286936 | 2R | 7664038..7664296 | 15..273 | 1295 | 100 | Plus |
2R | 25286936 | 2R | 7664896..7665121 | 691..916 | 1130 | 100 | Plus |
2R | 25286936 | 2R | 7664352..7664509 | 273..430 | 790 | 100 | Plus |
2R | 25286936 | 2R | 7666151..7666400 | 15..264 | 710 | 85.6 | Plus |
2R | 25286936 | 2R | 7655578..7655712 | 17..151 | 435 | 88.1 | Plus |
2R | 25286936 | 2R | 7662173..7662429 | 17..273 | 340 | 75.5 | Plus |
2R | 25286936 | 2R | 7666475..7666630 | 275..430 | 315 | 80.1 | Plus |
2R | 25286936 | 2R | 7666792..7666920 | 536..664 | 300 | 82.2 | Plus |
X | 23542271 | X | 6342357..6342458 | 56..157 | 255 | 83.3 | Plus |
2R | 25286936 | 2R | 7657419..7657555 | 17..153 | 250 | 78.8 | Plus |
Blast to na_te.dros performed on 2014-11-26 16:00:40 has no hits.
BO13690.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:45:04 Download gff for
BO13690.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2065-RA | 1..903 | 17..920 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:59:01 Download gff for
BO13690.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2065-RA | 155..1061 | 15..922 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:50:04 Download gff for
BO13690.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2065-RA | 157..1056 | 17..918 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:45:04 Download gff for
BO13690.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2065-RA | 155..1061 | 15..922 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:09:08 Download gff for
BO13690.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2065-RA | 157..1056 | 17..918 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:09:08 Download gff for
BO13690.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 7664040..7664296 | 17..273 | 100 | -> | Plus |
2R | 7664353..7664509 | 274..430 | 100 | -> | Plus |
2R | 7664575..7664834 | 431..690 | 100 | -> | Plus |
2R | 7664896..7665121 | 691..918 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:50:04 Download gff for
BO13690.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 3552401..3552626 | 691..918 | 99 | | Plus |
arm_2R | 3551545..3551801 | 17..273 | 100 | -> | Plus |
arm_2R | 3551858..3552014 | 274..430 | 100 | -> | Plus |
arm_2R | 3552080..3552339 | 431..690 | 100 | -> | Plus |
BO13690.pep Sequence
Translation from 16 to 934
> BO13690.pep
MQGGQFTKQTDETGKVFIVTGANTGIGKETVLEIAKRGGTVYMACRDMNR
CEKARQDIIRETNNQNIFSRELDLSSLESIRKFAAGFKKEQDKLHVLINN
AGVMHCPRTLTKDGFEMQLGVNHMGHFLLTHLLLDVLKKTAPSRIVNVSS
LVHTQGFIKTADLNSEKSYSRIGAYSQSKLANVLFTRELAKRLEGTGVTT
NSLHPGAVDTELSRNWKFLKHPFAQLLLKPLLWVLFKTPRNGAQTTLYAA
LDPALKDVSGLYFSDCQPKEVSAAAQDDKTGKFLWAESEKWTGVNSTKVD
ASFLDH
BO13690.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:06:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2065-PB | 300 | CG2065-PB | 1..300 | 1..300 | 1551 | 100 | Plus |
CG2065-PA | 300 | CG2065-PA | 1..300 | 1..300 | 1551 | 100 | Plus |
CG2064-PA | 330 | CG2064-PA | 30..329 | 1..300 | 1217 | 76.3 | Plus |
CG2070-PB | 325 | CG2070-PB | 30..324 | 1..295 | 1105 | 71.2 | Plus |
CG2070-PA | 325 | CG2070-PA | 30..324 | 1..295 | 1105 | 71.2 | Plus |