Clone Sequence Records
BO13691.3prime Sequence
608 bp (607 high quality bases) assembled on 2006-05-08
> BO13691.3prime
ATGGTCTAGAAAGCTTGCCGTTGAAGATTGGTGGTGACCGTCCTCGTTGT
ATTCCTTGTTGACCTTAAGGGAATGATTAATAACGCTCGAGCCGCCTGGA
GGATAGTTCGGGGCAGGCCCTGATCCCGGGCCGCTGGCAGGCTGCTGTGC
CTGAGGCTGATTGGGGATCGCATTTGGGTTGTTAACTGGATTCTGTCCGG
GAGCCCCCTGCGGTGGATAGCCGCCTGGATATCCGGACGGGTCGGGTGGA
TACATTGATGGTGGCGGAGCTTGTTGCGGGTGTGGCGGTGGTGGTGGTGG
TGGGGGCATGTACAGATTGTAGGGATATGAAGGATAGCCTCCCATTTGAG
GATACGGAGGATACGGCATGTACGGATTGTAGAGATATGAAGGATAGCCT
CCCATTTCTTGATACGGAGGATAGCCCGGATTAGGATATGCAGGATAATT
GTACTTGTGCTCCGTCTTGGAGTGCTTGTGCTTCTTCTCTCCACTGCTGC
TGCTGCTGCTGTCGCTGCTATCGCTGTCCGTCCTAACCACTTCGTACTGA
AGTAGCAGTACCAGAAGGACTCCAATCGCCGCACAGCTCTTCATGTCGAC
TGATAACT
BO13691.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:09:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16743-PA | 579 | CG16743-RA | 1..576 | 594..19 | 2880 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 12:37:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16743-RB | 1013 | CG16743-RB | 257..832 | 594..19 | 2880 | 100 | Minus |
CG16743-RA | 742 | CG16743-RA | 55..630 | 594..19 | 2880 | 100 | Minus |
CG16743-RB | 1013 | CG16743-RB | 428..486 | 363..305 | 220 | 91.5 | Minus |
CG16743-RB | 1013 | CG16743-RB | 488..546 | 423..365 | 220 | 91.5 | Minus |
CG16743-RA | 742 | CG16743-RA | 226..284 | 363..305 | 220 | 91.5 | Minus |
CG16743-RA | 742 | CG16743-RA | 286..344 | 423..365 | 220 | 91.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 12:36:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10972652..10973227 | 594..19 | 2880 | 100 | Minus |
2L | 23513712 | 2L | 10972823..10972881 | 363..305 | 220 | 91.5 | Minus |
2L | 23513712 | 2L | 10972883..10972941 | 423..365 | 220 | 91.5 | Minus |
Blast to na_te.dros performed on 2015-02-08 12:37:01 has no hits.
BO13691.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:10:21 Download gff for
BO13691.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16743-PA | 1..579 | 18..594 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:58:54 Download gff for
BO13691.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16743-PA | 1..579 | 18..594 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:39:02 Download gff for
BO13691.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16743-RA | 52..630 | 19..597 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 15:22:45 Download gff for
BO13691.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16743-RA | 52..630 | 19..597 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 15:22:45 Download gff for
BO13691.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10972649..10973226 | 20..597 | 99 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:39:02 Download gff for
BO13691.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10972649..10973226 | 20..597 | 99 | -> | Minus |
BO13691.5prime Sequence
608 bp (607 high quality bases) assembled on 2006-05-08
> BO13691.5prime
GAAGTTATCAGTCGACATGAAGAGCTGTGCGGCGATTGGAGTCCTTCTGG
TACTGCTACTTCAGTACGAAGTGGTTAGGACGGACAGCGATAGCAGCGAC
AGCAGCAGCAGCAGCAGTGGAGAGAAGAAGCACAAGCACTCCAAGACGGA
GCACAAGTACAATTATCCTGCATATCCTAATCCGGGCTATCCTCCGTATC
AAGAAATGGGAGGCTATCCTTCATATCTCTACAATCCGTACATGCCGTAT
CCTCCGTATCCTCAAATGGGAGGCTATCCTTCATATCCCTACAATCTGTA
CATGCCCCCACCACCACCACCACCGCCACACCCGCAACAAGCTCCGCCAC
CATCAATGTATCCACCCGACCCGTCCGGATATCCAGGCGGCTATCCACCG
CAGGGGGCTCCCGGACAGAATCCAGTTAACAACCCAAATGCGATCCCCAA
TCAGCCTCAGGCACAGCAGCCTGCCAGCGGCCCGGGATCAGGGCCTGCCC
CGAACTATCCTCCAGGCGGCTCGAGCGTTATTAATCATTCCCTTAAGGTC
AACAAGGAATACAACGAGGACGGTCACCACCAATCTTCAACGGCAAGCTT
TCTAGACC
BO13691.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:09:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16743-PA | 579 | CG16743-RA | 1..576 | 17..592 | 2880 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:07:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16743-RB | 1013 | CG16743-RB | 257..832 | 17..592 | 2880 | 100 | Plus |
CG16743-RA | 742 | CG16743-RA | 55..630 | 17..592 | 2880 | 100 | Plus |
CG16743-RB | 1013 | CG16743-RB | 428..486 | 248..306 | 220 | 91.5 | Plus |
CG16743-RB | 1013 | CG16743-RB | 488..546 | 188..246 | 220 | 91.5 | Plus |
CG16743-RA | 742 | CG16743-RA | 226..284 | 248..306 | 220 | 91.5 | Plus |
CG16743-RA | 742 | CG16743-RA | 286..344 | 188..246 | 220 | 91.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:07:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10972652..10973227 | 17..592 | 2880 | 100 | Plus |
2L | 23513712 | 2L | 10972823..10972881 | 248..306 | 220 | 91.5 | Plus |
2L | 23513712 | 2L | 10972883..10972941 | 188..246 | 220 | 91.5 | Plus |
Blast to na_te.dros performed on 2015-02-11 23:07:23 has no hits.
BO13691.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:10:23 Download gff for
BO13691.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16743-PA | 1..579 | 17..593 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:58:56 Download gff for
BO13691.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16743-PA | 1..579 | 17..593 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 19:40:41 Download gff for
BO13691.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16743-RA | 52..630 | 14..592 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:54:03 Download gff for
BO13691.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16743-RA | 52..630 | 14..592 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:54:03 Download gff for
BO13691.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10972649..10973226 | 14..591 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 19:40:41 Download gff for
BO13691.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10972649..10973226 | 14..591 | 99 | -> | Plus |
BO13691.complete Sequence
610 bp assembled on 2006-10-11
GenBank Submission: FJ632910
> BO13691.complete
GAAGTTATCAGTCGACATGAAGAGCTGTGCGGCGATTGGAGTCCTTCTGG
TACTGCTACTTCAGTACGAAGTGGTTAGGACGGACAGCGATAGCAGCGAC
AGCAGCAGCAGCAGCAGTGGAGAGAAGAAGCACAAGCACTCCAAGACGGA
GCACAAGTACAATTATCCTGCATATCCTAATCCGGGCTATCCTCCGTATC
AAGAAATGGGAGGCTATCCTTCATATCTCTACAATCCGTACATGCCGTAT
CCTCCGTATCCTCAAATGGGAGGCTATCCTTCATATCCCTACAATCTGTA
CATGCCCCCACCACCACCACCACCGCCACACCCGCAACAAGCTCCGCCAC
CATCAATGTATCCACCCGACCCGTCCGGATATCCAGGCGGCTATCCACCG
CAGGGGGCTCCCGGACAGAATCCAGTTAACAACCCAAATGCGATCCCCAA
TCAGCCTCAGGCACAGCAGCCTGCCAGCGGCCCGGGATCAGGGCCTGCCC
CGAACTATCCTCCAGGCGGCTCGAGCGTTATTAATCATTCCCTTAAGGTC
AACAAGGAATACAACGAGGACGGTCACCACCAATCTTCAACGGCAAGCTT
TCTAGACCAT
BO13691.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:04:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16743-RB | 723 | CG16743-PB | 145..720 | 17..592 | 2880 | 100 | Plus |
CG16743-RA | 579 | CG16743-PA | 1..576 | 17..592 | 2880 | 100 | Plus |
CG16743-RB | 723 | CG16743-PB | 316..374 | 248..306 | 220 | 91.5 | Plus |
CG16743-RB | 723 | CG16743-PB | 376..434 | 188..246 | 220 | 91.5 | Plus |
CG16743-RA | 579 | CG16743-PA | 172..230 | 248..306 | 220 | 91.5 | Plus |
CG16743-RA | 579 | CG16743-PA | 232..290 | 188..246 | 220 | 91.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:04:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16743-RB | 1013 | CG16743-RB | 257..832 | 17..592 | 2880 | 100 | Plus |
CG16743-RA | 742 | CG16743-RA | 55..630 | 17..592 | 2880 | 100 | Plus |
CG16743-RB | 1013 | CG16743-RB | 428..486 | 248..306 | 220 | 91.5 | Plus |
CG16743-RB | 1013 | CG16743-RB | 488..546 | 188..246 | 220 | 91.5 | Plus |
CG16743-RA | 742 | CG16743-RA | 226..284 | 248..306 | 220 | 91.5 | Plus |
CG16743-RA | 742 | CG16743-RA | 286..344 | 188..246 | 220 | 91.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:04:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10972652..10973227 | 17..592 | 2880 | 100 | Plus |
2L | 23513712 | 2L | 10972823..10972881 | 248..306 | 220 | 91.5 | Plus |
2L | 23513712 | 2L | 10972883..10972941 | 188..246 | 220 | 91.5 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:04:43 has no hits.
BO13691.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:53:11 Download gff for
BO13691.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16743-RA | 1..579 | 17..593 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:25:19 Download gff for
BO13691.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16743-RA | 70..648 | 14..592 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:26:37 Download gff for
BO13691.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16743-RA | 55..630 | 17..594 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:53:11 Download gff for
BO13691.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16743-RA | 70..648 | 14..592 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:10:30 Download gff for
BO13691.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16743-RA | 55..630 | 17..594 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:10:30 Download gff for
BO13691.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10972652..10973227 | 17..594 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:26:37 Download gff for
BO13691.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10972652..10973227 | 17..594 | 99 | | Plus |
BO13691.pep Sequence
Translation from 16 to 610
> BO13691.pep
MKSCAAIGVLLVLLLQYEVVRTDSDSSDSSSSSSGEKKHKHSKTEHKYNY
PAYPNPGYPPYQEMGGYPSYLYNPYMPYPPYPQMGGYPSYPYNLYMPPPP
PPPPHPQQAPPPSMYPPDPSGYPGGYPPQGAPGQNPVNNPNAIPNQPQAQ
QPASGPGSGPAPNYPPGGSSVINHSLKVNKEYNEDGHHQSSTASFLDH
BO13691.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:22:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16743-PA | 192 | CG16743-PA | 1..192 | 1..192 | 1098 | 100 | Plus |
CG16743-PB | 240 | CG16743-PB | 49..240 | 1..192 | 1098 | 100 | Plus |
CG15021-PA | 420 | CG15021-PA | 144..309 | 48..168 | 171 | 32.9 | Plus |
CG10555-PB | 926 | CG10555-PB | 455..604 | 39..166 | 165 | 31.1 | Plus |
CG10555-PA | 926 | CG10555-PA | 455..604 | 39..166 | 165 | 31.1 | Plus |
CG15021-PA | 420 | CG15021-PA | 140..285 | 54..171 | 164 | 36.2 | Plus |
CG15021-PA | 420 | CG15021-PA | 86..193 | 51..166 | 155 | 37.9 | Plus |