Clone Sequence Records
BO13692.3prime Sequence
657 bp (564 high quality bases) assembled on 2006-05-08
> BO13692.3prime
ATGGTCTAGAAAGCTTGCTTTGGTGGCAGCCGAAGGTGCGGTCGGAGGAC
CGTCGTTGATGACAGGAGCTGTGGGCGCGGGCGTCACCGGAGTGGGCACG
TTGCTGTCACTGGGTGAGGGGGGCTGGGGCACGGAGATGGTGGTACCAGT
CGGGGTAATGATGTCGTCACTGCCGGAGGCCGTGGTGCTGCCAGGAGCTT
CAGTTGGTGGTACGGGCACCGTGACGGTGGTAGACTCGCCAGGTGCTGCA
GTGGTGGACTCGCCAGGTGCCGCAGTGGTGGAAGCAGCGGTAGTGGGGGA
CGCGGTGGTGGGAGCAATGGTGGTTCCGGTTGTGGGGGCCACAGTGGTAA
CGGTGGAGATGGGCACACAGGTCACATTGATGGGCAGACTGCTGCACTGG
GCGCTTGGGAAGTAATTGGCGCAGGCCACGCATCTCTGCAAGGCATAGTT
GAAGTAGGTGTCTTCACCGCAGCTGGTCAAGACGCCAGTCACCACTATGC
TGCCATCGGACTGTAACTGTGCGGTGCACTGGTAGTACACGGAGGCGTTC
TCATAGTTGGGCAACTTGAATCCTGACTGTGGGCAATTGACAGGATCGAT
CTTTTCCGTATATTGAGGAACGGCGGACCATGCCGCGTGGGCCTTTTCCC
GGCCTGG
BO13692.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:09:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7714-PA | 678 | CG7714-RA | 52..675 | 642..19 | 3070 | 99.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 04:21:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7714-RA | 953 | CG7714-RA | 128..757 | 649..19 | 3100 | 99.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 04:21:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 18725595..18726222 | 19..646 | 3095 | 99.5 | Plus |
Blast to na_te.dros performed on 2015-02-01 04:21:53 has no hits.
BO13692.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:10:24 Download gff for
BO13692.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7714-PA | 38..678 | 15..657 | 98 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:58:57 Download gff for
BO13692.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7714-PA | 38..678 | 15..657 | 98 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 15:04:36 Download gff for
BO13692.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7714-RA | 120..765 | 8..657 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 05:46:22 Download gff for
BO13692.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7714-RA | 120..765 | 8..657 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 05:46:22 Download gff for
BO13692.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 18725587..18726232 | 8..657 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 15:04:36 Download gff for
BO13692.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 14551309..14551954 | 8..657 | 98 | | Plus |
BO13692.5prime Sequence
707 bp (706 high quality bases) assembled on 2006-05-08
> BO13692.5prime
GAAGTTATCAGTCGACATGAAAGCCGTGATCTTTGTGCTCGCCGTCGTGG
TAGCCATGGCCGGAAAAGCCCACGCCGCATGCTCCGCCGTTCCTCAATAT
ACGGAAAAGATCGATCCTGTCAATTGCCCACAGTCAGGATTCAAGTTGCC
CAACTATGAGAACGCCTCCGTGTACTACCAGTGCACCGCACAGTTACAGT
CCGATGGCAGCATAGTGGTGACTGGCGTCTTGACCAGCTGCGGTGAAGAC
ACCTACTTCAACTATGCCTTGCAGAGATGCGTGGCCTGCGCCAATTACTT
CCCAAGCGCCCAGTGCAGCAGTCTGCCCATCAATGTGACCTGTGTGCCCA
TCTCCACCGTTACCACTGTGGCCCCCACAACCGGAACCACCATTGCTCCC
ACCACCGCGTCCCCCACTACCGCTGCTTCCACCACTGCGGCACCTGGCGA
GTCCACCACTGCAGCACCTGGCGAGTCTACCACCGTCACGGTGCCCGTAC
CACCAACTGAAGCTCCTGGCAGCACCACGGCCTCCGGCAGTGACGACATC
ATTACCCCGACTGGTACCACCATCTCCGTGCCCCAGCCCCCCTCACCCAG
TGACAGCAACGTGCCCACTCCGGTGACGCCCGCGCCCACAGCTCCTGTCA
TCAACGACGGTCCTCCGACCGCACCTTCGGCTGCCACCAAAGCAAGCTTT
CTAGACC
BO13692.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:09:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7714-PA | 678 | CG7714-RA | 1..675 | 17..691 | 3375 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:29:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7714-RA | 953 | CG7714-RA | 81..757 | 15..691 | 3385 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:29:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 18725595..18726260 | 691..26 | 3330 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 22:29:07 has no hits.
BO13692.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:10:25 Download gff for
BO13692.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7714-PA | 1..678 | 17..695 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:58:59 Download gff for
BO13692.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7714-PA | 1..678 | 17..695 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 00:58:22 Download gff for
BO13692.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7714-RA | 76..765 | 9..702 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:57:08 Download gff for
BO13692.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7714-RA | 76..765 | 9..702 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:57:08 Download gff for
BO13692.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 18725587..18726263 | 20..702 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 00:58:22 Download gff for
BO13692.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 14551309..14551985 | 20..702 | 98 | | Minus |
BO13692.complete Sequence
709 bp assembled on 2006-10-11
GenBank Submission: FJ632911
> BO13692.complete
GAAGTTATCAGTCGACATGAAAGCCGTGATCTTTGTGCTCGCCGTCGTGG
TAGCCATGGCCGGAAAAGCCCACGCCGCATGCTCCGCCGTTCCTCAATAT
ACGGAAAAGATCGATCCTGTCAATTGCCCACAGTCAGGATTCAAGTTGCC
CAACTATGAGAACGCCTCCGTGTACTACCAGTGCACCGCACAGTTACAGT
CCGATGGCAGCATAGTGGTGACTGGCGTCTTGACCAGCTGCGGTGAAGAC
ACCTACTTCAACTATGCCTTGCAGAGATGCGTGGCCTGCGCCAATTACTT
CCCAAGCGCCCAGTGCAGCAGTCTGCCCATCAATGTGACCTGTGTGCCCA
TCTCCACCGTTACCACTGTGGCCCCCACAACCGGAACCACCATTGCTCCC
ACCACCGCGTCCCCCACTACCGCTGCTTCCACCACTGCGGCACCTGGCGA
GTCCACCACTGCAGCACCTGGCGAGTCTACCACCGTCACGGTGCCCGTAC
CACCAACTGAAGCTCCTGGCAGCACCACGGCCTCCGGCAGTGACGACATC
ATTACCCCGACTGGTACCACCATCTCCGTGCCCCAGCCCCCCTCACCCAG
TGACAGCAACGTGCCCACTCCGGTGACGCCCGCGCCCACAGCTCCTGTCA
TCAACGACGGTCCTCCGACCGCACCTTCGGCTGCCACCAAAGCAAGCTTT
CTAGACCAT
BO13692.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:40:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7714-RA | 678 | CG7714-PA | 1..675 | 17..691 | 3375 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:40:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7714-RA | 953 | CG7714-RA | 81..757 | 15..691 | 3385 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:40:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 18725595..18726260 | 691..26 | 3330 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:40:19 has no hits.
BO13692.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:45:05 Download gff for
BO13692.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7714-RA | 1..678 | 17..695 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:59:03 Download gff for
BO13692.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7714-RA | 76..765 | 9..702 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:21:42 Download gff for
BO13692.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7714-RA | 83..757 | 17..693 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:45:05 Download gff for
BO13692.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7714-RA | 76..765 | 9..702 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:53:16 Download gff for
BO13692.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7714-RA | 83..757 | 17..693 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:53:16 Download gff for
BO13692.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 18725593..18726263 | 20..693 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:21:42 Download gff for
BO13692.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 14551315..14551985 | 20..693 | 99 | | Minus |
BO13692.pep Sequence
Translation from 16 to 709
> BO13692.pep
MKAVIFVLAVVVAMAGKAHAACSAVPQYTEKIDPVNCPQSGFKLPNYENA
SVYYQCTAQLQSDGSIVVTGVLTSCGEDTYFNYALQRCVACANYFPSAQC
SSLPINVTCVPISTVTTVAPTTGTTIAPTTASPTTAASTTAAPGESTTAA
PGESTTVTVPVPPTEAPGSTTASGSDDIITPTGTTISVPQPPSPSDSNVP
TPVTPAPTAPVINDGPPTAPSAATKASFLDH
BO13692.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:06:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7714-PA | 225 | CG7714-PA | 1..225 | 1..225 | 1172 | 100 | Plus |
CG34220-PA | 726 | CG34220-PA | 142..261 | 108..223 | 170 | 36.2 | Plus |
CG34220-PA | 726 | CG34220-PA | 317..434 | 108..224 | 170 | 35.2 | Plus |
Muc55B-PB | 485 | CG5765-PB | 127..338 | 47..222 | 168 | 34 | Plus |
Muc55B-PA | 485 | CG5765-PA | 127..338 | 47..222 | 168 | 34 | Plus |
CG34220-PA | 726 | CG34220-PA | 430..535 | 111..227 | 161 | 35 | Plus |
Muc26B-PA | 471 | CG13990-PA | 130..280 | 56..208 | 161 | 32.7 | Plus |
CG34220-PA | 726 | CG34220-PA | 133..241 | 108..218 | 160 | 35.1 | Plus |
CG34220-PA | 726 | CG34220-PA | 275..413 | 96..223 | 158 | 31.7 | Plus |
Muc55B-PB | 485 | CG5765-PB | 253..380 | 96..222 | 158 | 37.8 | Plus |
Muc55B-PB | 485 | CG5765-PB | 258..394 | 96..222 | 158 | 37.3 | Plus |
Muc55B-PA | 485 | CG5765-PA | 253..380 | 96..222 | 158 | 37.8 | Plus |
Muc55B-PA | 485 | CG5765-PA | 258..394 | 96..222 | 158 | 37.3 | Plus |
Muc55B-PB | 485 | CG5765-PB | 304..424 | 107..224 | 157 | 38.9 | Plus |
Muc55B-PA | 485 | CG5765-PA | 304..424 | 107..224 | 157 | 38.9 | Plus |
CG34220-PA | 726 | CG34220-PA | 6..229 | 5..221 | 156 | 26.3 | Plus |
Muc55B-PB | 485 | CG5765-PB | 290..408 | 107..222 | 155 | 39.5 | Plus |
Muc55B-PA | 485 | CG5765-PA | 290..408 | 107..222 | 155 | 39.5 | Plus |
Muc55B-PB | 485 | CG5765-PB | 332..455 | 107..227 | 150 | 36.7 | Plus |
Muc55B-PA | 485 | CG5765-PA | 332..455 | 107..227 | 150 | 36.7 | Plus |