Clone BO13692 Report

Search the DGRC for BO13692

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:136
Well:92
Vector:pDNR-Dual
Associated Gene/TranscriptCG7714-RA
Protein status:BO13692.pep: validated full length
Sequenced Size:709

Clone Sequence Records

BO13692.3prime Sequence

657 bp (564 high quality bases) assembled on 2006-05-08

> BO13692.3prime
ATGGTCTAGAAAGCTTGCTTTGGTGGCAGCCGAAGGTGCGGTCGGAGGAC
CGTCGTTGATGACAGGAGCTGTGGGCGCGGGCGTCACCGGAGTGGGCACG
TTGCTGTCACTGGGTGAGGGGGGCTGGGGCACGGAGATGGTGGTACCAGT
CGGGGTAATGATGTCGTCACTGCCGGAGGCCGTGGTGCTGCCAGGAGCTT
CAGTTGGTGGTACGGGCACCGTGACGGTGGTAGACTCGCCAGGTGCTGCA
GTGGTGGACTCGCCAGGTGCCGCAGTGGTGGAAGCAGCGGTAGTGGGGGA
CGCGGTGGTGGGAGCAATGGTGGTTCCGGTTGTGGGGGCCACAGTGGTAA
CGGTGGAGATGGGCACACAGGTCACATTGATGGGCAGACTGCTGCACTGG
GCGCTTGGGAAGTAATTGGCGCAGGCCACGCATCTCTGCAAGGCATAGTT
GAAGTAGGTGTCTTCACCGCAGCTGGTCAAGACGCCAGTCACCACTATGC
TGCCATCGGACTGTAACTGTGCGGTGCACTGGTAGTACACGGAGGCGTTC
TCATAGTTGGGCAACTTGAATCCTGACTGTGGGCAATTGACAGGATCGAT
CTTTTCCGTATATTGAGGAACGGCGGACCATGCCGCGTGGGCCTTTTCCC
GGCCTGG

BO13692.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:09:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG7714-PA 678 CG7714-RA 52..675 642..19 3070 99.6 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 04:21:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG7714-RA 953 CG7714-RA 128..757 649..19 3100 99.5 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 04:21:49
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 18725595..18726222 19..646 3095 99.5 Plus
Blast to na_te.dros performed on 2015-02-01 04:21:53 has no hits.

BO13692.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:10:24 Download gff for BO13692.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7714-PA 38..678 15..657 98   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:58:57 Download gff for BO13692.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7714-PA 38..678 15..657 98   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 15:04:36 Download gff for BO13692.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7714-RA 120..765 8..657 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 05:46:22 Download gff for BO13692.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7714-RA 120..765 8..657 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 05:46:22 Download gff for BO13692.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 18725587..18726232 8..657 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 15:04:36 Download gff for BO13692.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 14551309..14551954 8..657 98   Plus

BO13692.5prime Sequence

707 bp (706 high quality bases) assembled on 2006-05-08

> BO13692.5prime
GAAGTTATCAGTCGACATGAAAGCCGTGATCTTTGTGCTCGCCGTCGTGG
TAGCCATGGCCGGAAAAGCCCACGCCGCATGCTCCGCCGTTCCTCAATAT
ACGGAAAAGATCGATCCTGTCAATTGCCCACAGTCAGGATTCAAGTTGCC
CAACTATGAGAACGCCTCCGTGTACTACCAGTGCACCGCACAGTTACAGT
CCGATGGCAGCATAGTGGTGACTGGCGTCTTGACCAGCTGCGGTGAAGAC
ACCTACTTCAACTATGCCTTGCAGAGATGCGTGGCCTGCGCCAATTACTT
CCCAAGCGCCCAGTGCAGCAGTCTGCCCATCAATGTGACCTGTGTGCCCA
TCTCCACCGTTACCACTGTGGCCCCCACAACCGGAACCACCATTGCTCCC
ACCACCGCGTCCCCCACTACCGCTGCTTCCACCACTGCGGCACCTGGCGA
GTCCACCACTGCAGCACCTGGCGAGTCTACCACCGTCACGGTGCCCGTAC
CACCAACTGAAGCTCCTGGCAGCACCACGGCCTCCGGCAGTGACGACATC
ATTACCCCGACTGGTACCACCATCTCCGTGCCCCAGCCCCCCTCACCCAG
TGACAGCAACGTGCCCACTCCGGTGACGCCCGCGCCCACAGCTCCTGTCA
TCAACGACGGTCCTCCGACCGCACCTTCGGCTGCCACCAAAGCAAGCTTT
CTAGACC

BO13692.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:09:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG7714-PA 678 CG7714-RA 1..675 17..691 3375 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:29:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG7714-RA 953 CG7714-RA 81..757 15..691 3385 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:29:04
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 18725595..18726260 691..26 3330 100 Minus
Blast to na_te.dros performed on 2015-02-10 22:29:07 has no hits.

BO13692.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:10:25 Download gff for BO13692.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7714-PA 1..678 17..695 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:58:59 Download gff for BO13692.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7714-PA 1..678 17..695 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 00:58:22 Download gff for BO13692.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7714-RA 76..765 9..702 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:57:08 Download gff for BO13692.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7714-RA 76..765 9..702 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:57:08 Download gff for BO13692.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 18725587..18726263 20..702 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 00:58:22 Download gff for BO13692.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 14551309..14551985 20..702 98   Minus

BO13692.complete Sequence

709 bp assembled on 2006-10-11

GenBank Submission: FJ632911

> BO13692.complete
GAAGTTATCAGTCGACATGAAAGCCGTGATCTTTGTGCTCGCCGTCGTGG
TAGCCATGGCCGGAAAAGCCCACGCCGCATGCTCCGCCGTTCCTCAATAT
ACGGAAAAGATCGATCCTGTCAATTGCCCACAGTCAGGATTCAAGTTGCC
CAACTATGAGAACGCCTCCGTGTACTACCAGTGCACCGCACAGTTACAGT
CCGATGGCAGCATAGTGGTGACTGGCGTCTTGACCAGCTGCGGTGAAGAC
ACCTACTTCAACTATGCCTTGCAGAGATGCGTGGCCTGCGCCAATTACTT
CCCAAGCGCCCAGTGCAGCAGTCTGCCCATCAATGTGACCTGTGTGCCCA
TCTCCACCGTTACCACTGTGGCCCCCACAACCGGAACCACCATTGCTCCC
ACCACCGCGTCCCCCACTACCGCTGCTTCCACCACTGCGGCACCTGGCGA
GTCCACCACTGCAGCACCTGGCGAGTCTACCACCGTCACGGTGCCCGTAC
CACCAACTGAAGCTCCTGGCAGCACCACGGCCTCCGGCAGTGACGACATC
ATTACCCCGACTGGTACCACCATCTCCGTGCCCCAGCCCCCCTCACCCAG
TGACAGCAACGTGCCCACTCCGGTGACGCCCGCGCCCACAGCTCCTGTCA
TCAACGACGGTCCTCCGACCGCACCTTCGGCTGCCACCAAAGCAAGCTTT
CTAGACCAT

BO13692.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:40:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG7714-RA 678 CG7714-PA 1..675 17..691 3375 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:40:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG7714-RA 953 CG7714-RA 81..757 15..691 3385 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:40:18
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 18725595..18726260 691..26 3330 100 Minus
Blast to na_te.dros performed on 2014-11-27 13:40:19 has no hits.

BO13692.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:45:05 Download gff for BO13692.complete
Subject Subject Range Query Range Percent Splice Strand
CG7714-RA 1..678 17..695 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:59:03 Download gff for BO13692.complete
Subject Subject Range Query Range Percent Splice Strand
CG7714-RA 76..765 9..702 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:21:42 Download gff for BO13692.complete
Subject Subject Range Query Range Percent Splice Strand
CG7714-RA 83..757 17..693 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:45:05 Download gff for BO13692.complete
Subject Subject Range Query Range Percent Splice Strand
CG7714-RA 76..765 9..702 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:53:16 Download gff for BO13692.complete
Subject Subject Range Query Range Percent Splice Strand
CG7714-RA 83..757 17..693 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:53:16 Download gff for BO13692.complete
Subject Subject Range Query Range Percent Splice Strand
3R 18725593..18726263 20..693 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:21:42 Download gff for BO13692.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 14551315..14551985 20..693 99   Minus

BO13692.pep Sequence

Translation from 16 to 709

> BO13692.pep
MKAVIFVLAVVVAMAGKAHAACSAVPQYTEKIDPVNCPQSGFKLPNYENA
SVYYQCTAQLQSDGSIVVTGVLTSCGEDTYFNYALQRCVACANYFPSAQC
SSLPINVTCVPISTVTTVAPTTGTTIAPTTASPTTAASTTAAPGESTTAA
PGESTTVTVPVPPTEAPGSTTASGSDDIITPTGTTISVPQPPSPSDSNVP
TPVTPAPTAPVINDGPPTAPSAATKASFLDH

BO13692.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:06:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG7714-PA 225 CG7714-PA 1..225 1..225 1172 100 Plus
CG34220-PA 726 CG34220-PA 142..261 108..223 170 36.2 Plus
CG34220-PA 726 CG34220-PA 317..434 108..224 170 35.2 Plus
Muc55B-PB 485 CG5765-PB 127..338 47..222 168 34 Plus
Muc55B-PA 485 CG5765-PA 127..338 47..222 168 34 Plus
CG34220-PA 726 CG34220-PA 430..535 111..227 161 35 Plus
Muc26B-PA 471 CG13990-PA 130..280 56..208 161 32.7 Plus
CG34220-PA 726 CG34220-PA 133..241 108..218 160 35.1 Plus
CG34220-PA 726 CG34220-PA 275..413 96..223 158 31.7 Plus
Muc55B-PB 485 CG5765-PB 253..380 96..222 158 37.8 Plus
Muc55B-PB 485 CG5765-PB 258..394 96..222 158 37.3 Plus
Muc55B-PA 485 CG5765-PA 253..380 96..222 158 37.8 Plus
Muc55B-PA 485 CG5765-PA 258..394 96..222 158 37.3 Plus
Muc55B-PB 485 CG5765-PB 304..424 107..224 157 38.9 Plus
Muc55B-PA 485 CG5765-PA 304..424 107..224 157 38.9 Plus
CG34220-PA 726 CG34220-PA 6..229 5..221 156 26.3 Plus
Muc55B-PB 485 CG5765-PB 290..408 107..222 155 39.5 Plus
Muc55B-PA 485 CG5765-PA 290..408 107..222 155 39.5 Plus
Muc55B-PB 485 CG5765-PB 332..455 107..227 150 36.7 Plus
Muc55B-PA 485 CG5765-PA 332..455 107..227 150 36.7 Plus