Clone Sequence Records
BO13693.3prime Sequence
724 bp (721 high quality bases) assembled on 2006-05-08
> BO13693.3prime
ATGGTCTAGAAAGCTTGCTTCTCCGACGTTTTCATTATTACTGTAGGCTT
TCACAATATCCTTGATGGCTGCCTGGGTGCCGAAAACAAGAGCGCCAATG
CCGCACAACGTGATGATTGCGTTCTTCCACAGGATCCAGTTGTATTTACC
AAAGCCACTCTCCCAATGGACAATCAACTCAATGACCACCGGGAAGATCA
ATCCCAGAATGGAGAAGCAGAAGGCACCGATGAGACCCATAAATGGGCCA
ATTGTAGGAACAGCCACGGCCAGAACAACGGCAGCGGTCACCAGGACTGT
GCGCAGCACATAGTTGACCAATGTCGGGCGCTTCTTGCACTTCTCCTTAA
TGCCATCCCAGATGATCTCCAGGCACACAAAGAACTGCAGTCCAAATGTG
CAATATACGGCCAGGGAAATGAGCACCTTCACCGTCTGGGCGGGCCACTC
CTCGATGGGCAGATTCAGGGTGATGCTCTCACCGGTGGCGGAACCGTAAC
GCAGATATCCAAGGAATCCCAGCAGCATATAAATAAGGGTCACGCCCGAC
ATGCCCTGGCTGAGCACACCGCAGATTCCGAGGAAACTCTGTGGCGTCTT
CATGTTGTTCTCCAGCGGCATAACCACACCGATTGCCTCCATTGCAAAGA
TGGTGATCGAGAAGAACTGCGGCAGTGTGCTCCAAACAACGGACTCGCGC
TCCTCCACTGGTGGCAGATCCTGG
BO13693.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:09:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3424-PA | 1416 | path-RA | 708..1413 | 724..19 | 3530 | 100 | Minus |
CG3424-PC | 1503 | path-RC | 795..1500 | 724..19 | 3530 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:09:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
path-RE | 2532 | CG3424-RE | 701..1406 | 724..19 | 3530 | 100 | Minus |
path-RD | 3122 | CG3424-RD | 1291..1996 | 724..19 | 3530 | 100 | Minus |
path-RA | 2772 | CG3424-RA | 941..1646 | 724..19 | 3530 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:09:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 9495915..9496451 | 188..724 | 2685 | 100 | Plus |
3L | 28110227 | 3L | 9495681..9495852 | 19..190 | 860 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 10:09:16 has no hits.
BO13693.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:10:26 Download gff for
BO13693.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
path-PC | 795..1503 | 18..724 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:59:00 Download gff for
BO13693.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3424-PC | 795..1503 | 18..724 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 05:00:07 Download gff for
BO13693.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
path-RA | 941..1646 | 19..724 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:13:00 Download gff for
BO13693.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
path-RA | 941..1646 | 19..724 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:13:00 Download gff for
BO13693.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 9495681..9495851 | 19..189 | 100 | <- | Plus |
3L | 9495917..9496451 | 190..724 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 05:00:07 Download gff for
BO13693.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 9488781..9488951 | 19..189 | 100 | <- | Plus |
arm_3L | 9489017..9489551 | 190..724 | 100 | | Plus |
BO13693.5prime Sequence
885 bp (779 high quality bases) assembled on 2006-05-08
> BO13693.5prime
GAAGTTATCAGTCGACATGGTTAACATAGTGGACAGCGGGTCGAAGCATG
CGCCCCAGGAAATGGAGCAATTCCTGCCCGGCGAAGGAAAAGTCATGTAC
AAAATCCAACCCCGAAAGTCGGATACCGAGCAGGCCTTGGCTGGAAATGA
CTTTGATCCTTTCGCATTGCGGGACAATCCGCATCCAACAACCGATAATG
AAACTCTCACGCATTTGCTTAAGGCCTCCTTGGGAACCGGTATCCTGGGC
ATGCCATTTGCCTTCATGTGCTCCGGTCTCATCATGGGAATCTTCTCCAC
CATTTTCACCGCCTTTATATGCACGCACTGCAGTTACGTGTTGGTAAAAT
GCGGACACAAGTTGTACTACAGAACTCGCCGCACCAAGATGACCTTTGCC
GAAATTGCCGAGGCTGCCTTCCAAAAAGGACCAAAATGGTGCCGTGGCTT
CGCGCCAGTGGCCAAGTTCTCCATCCTGTTTGGTCTGTTCCTGACGTACT
TTGGCACCTGCTCGGTGTACACGGTTATTGTGGCCTCGAACTTTGAGCAG
TTGATTTCCTATTGGACGGGAACGGCAGTGTCGCTGCGCATGCTCATTTG
CATAATGCTGGTGCCGTTGATCCTCATCGCCTGGGTGCCAAATCTCAAGT
ACCTGGCACCCGTGTCGATGGTGGCCAATGTTTTCATGGGCCTGGGACTG
GGCATTACGTTCTACTATCTGGTCCAGGATCTGCCACCAGTGGAGGAGCG
CGAGTCCGTTGTTTGGAGCACACTGCCGCAGTTCTTCTCGATCACCATCT
TTGCAATGGAGGCAATCGGTGTGGTTATGCCGCTGGAGAACAACATGAAG
ACGCCACAGAGTTTCCTCGGAATCTGCGGTGTGCT
BO13693.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:09:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3424-PA | 1416 | path-RA | 1..869 | 17..885 | 4345 | 100 | Plus |
CG3424-PC | 1503 | path-RC | 168..956 | 97..885 | 3945 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:08:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
path-RD | 3122 | CG3424-RD | 584..1452 | 17..885 | 4345 | 100 | Plus |
path-RA | 2772 | CG3424-RA | 234..1102 | 17..885 | 4345 | 100 | Plus |
path-RE | 2532 | CG3424-RE | 74..862 | 97..885 | 3945 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 02:08:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 9496290..9496832 | 885..343 | 2715 | 100 | Minus |
3L | 28110227 | 3L | 9496895..9497048 | 346..193 | 770 | 100 | Minus |
3L | 28110227 | 3L | 9497116..9497211 | 192..97 | 480 | 100 | Minus |
3L | 28110227 | 3L | 9499020..9499087 | 98..31 | 340 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 02:08:16 has no hits.
BO13693.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:10:27 Download gff for
BO13693.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
path-PA | 1..869 | 17..885 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:59:02 Download gff for
BO13693.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3424-PA | 1..869 | 17..885 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:07:56 Download gff for
BO13693.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
path-RA | 227..1102 | 8..885 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:44:21 Download gff for
BO13693.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
path-RA | 227..1102 | 8..885 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:44:21 Download gff for
BO13693.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 9496290..9496831 | 344..885 | 100 | <- | Minus |
3L | 9496898..9497048 | 193..343 | 100 | <- | Minus |
3L | 9497116..9497211 | 97..192 | 100 | <- | Minus |
3L | 9499022..9499086 | 32..96 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:07:56 Download gff for
BO13693.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 9492122..9492186 | 32..96 | 100 | <- | Minus |
arm_3L | 9489390..9489931 | 344..885 | 100 | <- | Minus |
arm_3L | 9489998..9490148 | 193..343 | 100 | <- | Minus |
arm_3L | 9490216..9490311 | 97..192 | 100 | <- | Minus |
BO13693.complete Sequence
1447 bp assembled on 2006-10-11
GenBank Submission: FJ632912
> BO13693.complete
GAAGTTATCAGTCGACATGGTTAACATAGTGGACAGCGGGTCGAAGCATG
CGCCCCAGGAAATGGAGCAATTCCTGCCCGGCGAAGGAAAAGTCATGTAC
AAAATCCAACCCCGAAAGTCGGATACCGAGCAGGCCTTGGCTGGAAATGA
CTTTGATCCTTTCGCATTGCGGGACAATCCGCATCCAACAACCGATAATG
AAACTCTCACGCATTTGCTTAAGGCCTCCTTGGGAACCGGTATCCTGGGC
ATGCCATTTGCCTTCATGTGCTCCGGTCTCATCATGGGAATCTTCTCCAC
CATTTTCACCGCCTTTATATGCACGCACTGCAGTTACGTGTTGGTAAAAT
GCGGACACAAGTTGTACTACAGAACTCGCCGCACCAAGATGACCTTTGCC
GAAATTGCCGAGGCTGCCTTCCAAAAAGGACCAAAATGGTGCCGTGGCTT
CGCGCCAGTGGCCAAGTTCTCCATCCTGTTTGGTCTGTTCCTGACGTACT
TTGGCACCTGCTCGGTGTACACGGTTATTGTGGCCTCGAACTTTGAGCAG
TTGATTTCCTATTGGACGGGAACGGCAGTGTCGCTGCGCATGCTCATTTG
CATAATGCTGGTGCCGTTGATCCTCATCGCCTGGGTGCCAAATCTCAAGT
ACCTGGCACCCGTGTCGATGGTGGCCAATGTTTTCATGGGCCTGGGACTG
GGCATTACGTTCTACTATCTGGTCCAGGATCTGCCACCAGTGGAGGAGCG
CGAGTCCGTTGTTTGGAGCACACTGCCGCAGTTCTTCTCGATCACCATCT
TTGCAATGGAGGCAATCGGTGTGGTTATGCCGCTGGAGAACAACATGAAG
ACGCCACAGAGTTTCCTCGGAATCTGCGGTGTGCTCAGCCAGGGCATGTC
GGGCGTGACCCTTATTTATATGCTGCTGGGATTCCTTGGATATCTGCGTT
ACGGTTCCGCCACCGGTGAGAGCATCACCCTGAATCTGCCCATCGAGGAG
TGGCCCGCCCAGACGGTGAAGGTGCTCATTTCCCTGGCCGTATATTGCAC
ATTTGGACTGCAGTTCTTTGTGTGCCTGGAGATCATCTGGGATGGCATTA
AGGAGAAGTGCAAGAAGCGCCCGACATTGGTCAACTATGTGCTGCGCACA
GTCCTGGTGACCGCTGCCGTTGTTCTGGCCGTGGCTGTTCCTACAATTGG
CCCATTTATGGGTCTCATCGGTGCCTTCTGCTTCTCCATTCTGGGATTGA
TCTTCCCGGTGGTCATTGAGTTGATTGTCCATTGGGAGAGTGGCTTTGGT
AAATACAACTGGATCCTGTGGAAGAACGCAATCATCACGTTGTGCGGCAT
TGGCGCTCTTGTTTTCGGCACCCAGGCAGCCATCAAGGATATTGTGAAAG
CCTACAGTAATAATGAAAACGTCGGAGAAGCAAGCTTTCTAGACCAT
BO13693.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:29:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
path-RD | 1416 | CG3424-PD | 1..1413 | 17..1429 | 7065 | 100 | Plus |
path-RA | 1416 | CG3424-PA | 1..1413 | 17..1429 | 7065 | 100 | Plus |
path-RE | 1377 | CG3424-PE | 42..1374 | 97..1429 | 6665 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:29:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
path-RD | 3122 | CG3424-RD | 584..1996 | 17..1429 | 7065 | 100 | Plus |
path-RA | 2772 | CG3424-RA | 234..1646 | 17..1429 | 7065 | 100 | Plus |
path-RE | 2532 | CG3424-RE | 74..1406 | 97..1429 | 6665 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:29:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 9495915..9496832 | 1260..343 | 4590 | 100 | Minus |
3L | 28110227 | 3L | 9495681..9495852 | 1429..1258 | 860 | 100 | Minus |
3L | 28110227 | 3L | 9496895..9497048 | 346..193 | 770 | 100 | Minus |
3L | 28110227 | 3L | 9497116..9497211 | 192..97 | 480 | 100 | Minus |
3L | 28110227 | 3L | 9499020..9499087 | 98..31 | 340 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 16:29:18 has no hits.
BO13693.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:45:06 Download gff for
BO13693.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
path-RA | 1..1416 | 17..1430 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:59:05 Download gff for
BO13693.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
path-RA | 228..1647 | 8..1429 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:02:12 Download gff for
BO13693.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
path-RA | 234..1646 | 17..1431 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:45:06 Download gff for
BO13693.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
path-RA | 228..1647 | 8..1429 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:20:21 Download gff for
BO13693.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
path-RA | 234..1646 | 17..1431 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:20:21 Download gff for
BO13693.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 9495679..9495851 | 1259..1431 | 98 | <- | Minus |
3L | 9495917..9496831 | 344..1258 | 100 | <- | Minus |
3L | 9496898..9497048 | 193..343 | 100 | <- | Minus |
3L | 9497116..9497211 | 97..192 | 100 | <- | Minus |
3L | 9499022..9499086 | 32..96 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:02:12 Download gff for
BO13693.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 9490216..9490311 | 97..192 | 100 | <- | Minus |
arm_3L | 9492122..9492186 | 32..96 | 100 | <- | Minus |
arm_3L | 9488779..9488951 | 1259..1431 | 98 | <- | Minus |
arm_3L | 9489017..9489931 | 344..1258 | 100 | <- | Minus |
arm_3L | 9489998..9490148 | 193..343 | 100 | <- | Minus |
BO13693.pep Sequence
Translation from 16 to 1447
> BO13693.pep
MVNIVDSGSKHAPQEMEQFLPGEGKVMYKIQPRKSDTEQALAGNDFDPFA
LRDNPHPTTDNETLTHLLKASLGTGILGMPFAFMCSGLIMGIFSTIFTAF
ICTHCSYVLVKCGHKLYYRTRRTKMTFAEIAEAAFQKGPKWCRGFAPVAK
FSILFGLFLTYFGTCSVYTVIVASNFEQLISYWTGTAVSLRMLICIMLVP
LILIAWVPNLKYLAPVSMVANVFMGLGLGITFYYLVQDLPPVEERESVVW
STLPQFFSITIFAMEAIGVVMPLENNMKTPQSFLGICGVLSQGMSGVTLI
YMLLGFLGYLRYGSATGESITLNLPIEEWPAQTVKVLISLAVYCTFGLQF
FVCLEIIWDGIKEKCKKRPTLVNYVLRTVLVTAAVVLAVAVPTIGPFMGL
IGAFCFSILGLIFPVVIELIVHWESGFGKYNWILWKNAIITLCGIGALVF
GTQAAIKDIVKAYSNNENVGEASFLDH
BO13693.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:06:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
path-PD | 471 | CG3424-PD | 1..471 | 1..471 | 2465 | 100 | Plus |
path-PA | 471 | CG3424-PA | 1..471 | 1..471 | 2465 | 100 | Plus |
path-PE | 458 | CG3424-PE | 2..458 | 15..471 | 2331 | 97.6 | Plus |
CG43693-PF | 455 | CG43693-PF | 18..453 | 30..465 | 912 | 43.3 | Plus |
CG43693-PC | 482 | CG43693-PC | 45..480 | 30..465 | 912 | 43.3 | Plus |