Clone BO13693 Report

Search the DGRC for BO13693

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:136
Well:93
Vector:pDNR-Dual
Associated Gene/Transcriptpath-RA
Protein status:BO13693.pep: validated full length
Sequenced Size:1447

Clone Sequence Records

BO13693.3prime Sequence

724 bp (721 high quality bases) assembled on 2006-05-08

> BO13693.3prime
ATGGTCTAGAAAGCTTGCTTCTCCGACGTTTTCATTATTACTGTAGGCTT
TCACAATATCCTTGATGGCTGCCTGGGTGCCGAAAACAAGAGCGCCAATG
CCGCACAACGTGATGATTGCGTTCTTCCACAGGATCCAGTTGTATTTACC
AAAGCCACTCTCCCAATGGACAATCAACTCAATGACCACCGGGAAGATCA
ATCCCAGAATGGAGAAGCAGAAGGCACCGATGAGACCCATAAATGGGCCA
ATTGTAGGAACAGCCACGGCCAGAACAACGGCAGCGGTCACCAGGACTGT
GCGCAGCACATAGTTGACCAATGTCGGGCGCTTCTTGCACTTCTCCTTAA
TGCCATCCCAGATGATCTCCAGGCACACAAAGAACTGCAGTCCAAATGTG
CAATATACGGCCAGGGAAATGAGCACCTTCACCGTCTGGGCGGGCCACTC
CTCGATGGGCAGATTCAGGGTGATGCTCTCACCGGTGGCGGAACCGTAAC
GCAGATATCCAAGGAATCCCAGCAGCATATAAATAAGGGTCACGCCCGAC
ATGCCCTGGCTGAGCACACCGCAGATTCCGAGGAAACTCTGTGGCGTCTT
CATGTTGTTCTCCAGCGGCATAACCACACCGATTGCCTCCATTGCAAAGA
TGGTGATCGAGAAGAACTGCGGCAGTGTGCTCCAAACAACGGACTCGCGC
TCCTCCACTGGTGGCAGATCCTGG

BO13693.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:09:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG3424-PA 1416 path-RA 708..1413 724..19 3530 100 Minus
CG3424-PC 1503 path-RC 795..1500 724..19 3530 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:09:18
Subject Length Description Subject Range Query Range Score Percent Strand
path-RE 2532 CG3424-RE 701..1406 724..19 3530 100 Minus
path-RD 3122 CG3424-RD 1291..1996 724..19 3530 100 Minus
path-RA 2772 CG3424-RA 941..1646 724..19 3530 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:09:15
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 9495915..9496451 188..724 2685 100 Plus
3L 28110227 3L 9495681..9495852 19..190 860 100 Plus
Blast to na_te.dros performed on 2015-02-11 10:09:16 has no hits.

BO13693.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:10:26 Download gff for BO13693.3prime
Subject Subject Range Query Range Percent Splice Strand
path-PC 795..1503 18..724 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:59:00 Download gff for BO13693.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3424-PC 795..1503 18..724 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 05:00:07 Download gff for BO13693.3prime
Subject Subject Range Query Range Percent Splice Strand
path-RA 941..1646 19..724 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:13:00 Download gff for BO13693.3prime
Subject Subject Range Query Range Percent Splice Strand
path-RA 941..1646 19..724 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:13:00 Download gff for BO13693.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 9495681..9495851 19..189 100 <- Plus
3L 9495917..9496451 190..724 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 05:00:07 Download gff for BO13693.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 9488781..9488951 19..189 100 <- Plus
arm_3L 9489017..9489551 190..724 100   Plus

BO13693.5prime Sequence

885 bp (779 high quality bases) assembled on 2006-05-08

> BO13693.5prime
GAAGTTATCAGTCGACATGGTTAACATAGTGGACAGCGGGTCGAAGCATG
CGCCCCAGGAAATGGAGCAATTCCTGCCCGGCGAAGGAAAAGTCATGTAC
AAAATCCAACCCCGAAAGTCGGATACCGAGCAGGCCTTGGCTGGAAATGA
CTTTGATCCTTTCGCATTGCGGGACAATCCGCATCCAACAACCGATAATG
AAACTCTCACGCATTTGCTTAAGGCCTCCTTGGGAACCGGTATCCTGGGC
ATGCCATTTGCCTTCATGTGCTCCGGTCTCATCATGGGAATCTTCTCCAC
CATTTTCACCGCCTTTATATGCACGCACTGCAGTTACGTGTTGGTAAAAT
GCGGACACAAGTTGTACTACAGAACTCGCCGCACCAAGATGACCTTTGCC
GAAATTGCCGAGGCTGCCTTCCAAAAAGGACCAAAATGGTGCCGTGGCTT
CGCGCCAGTGGCCAAGTTCTCCATCCTGTTTGGTCTGTTCCTGACGTACT
TTGGCACCTGCTCGGTGTACACGGTTATTGTGGCCTCGAACTTTGAGCAG
TTGATTTCCTATTGGACGGGAACGGCAGTGTCGCTGCGCATGCTCATTTG
CATAATGCTGGTGCCGTTGATCCTCATCGCCTGGGTGCCAAATCTCAAGT
ACCTGGCACCCGTGTCGATGGTGGCCAATGTTTTCATGGGCCTGGGACTG
GGCATTACGTTCTACTATCTGGTCCAGGATCTGCCACCAGTGGAGGAGCG
CGAGTCCGTTGTTTGGAGCACACTGCCGCAGTTCTTCTCGATCACCATCT
TTGCAATGGAGGCAATCGGTGTGGTTATGCCGCTGGAGAACAACATGAAG
ACGCCACAGAGTTTCCTCGGAATCTGCGGTGTGCT

BO13693.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:09:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG3424-PA 1416 path-RA 1..869 17..885 4345 100 Plus
CG3424-PC 1503 path-RC 168..956 97..885 3945 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:08:19
Subject Length Description Subject Range Query Range Score Percent Strand
path-RD 3122 CG3424-RD 584..1452 17..885 4345 100 Plus
path-RA 2772 CG3424-RA 234..1102 17..885 4345 100 Plus
path-RE 2532 CG3424-RE 74..862 97..885 3945 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 02:08:13
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 9496290..9496832 885..343 2715 100 Minus
3L 28110227 3L 9496895..9497048 346..193 770 100 Minus
3L 28110227 3L 9497116..9497211 192..97 480 100 Minus
3L 28110227 3L 9499020..9499087 98..31 340 100 Minus
Blast to na_te.dros performed on 2015-02-13 02:08:16 has no hits.

BO13693.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:10:27 Download gff for BO13693.5prime
Subject Subject Range Query Range Percent Splice Strand
path-PA 1..869 17..885 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:59:02 Download gff for BO13693.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3424-PA 1..869 17..885 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:07:56 Download gff for BO13693.5prime
Subject Subject Range Query Range Percent Splice Strand
path-RA 227..1102 8..885 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:44:21 Download gff for BO13693.5prime
Subject Subject Range Query Range Percent Splice Strand
path-RA 227..1102 8..885 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:44:21 Download gff for BO13693.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 9496290..9496831 344..885 100 <- Minus
3L 9496898..9497048 193..343 100 <- Minus
3L 9497116..9497211 97..192 100 <- Minus
3L 9499022..9499086 32..96 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:07:56 Download gff for BO13693.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 9492122..9492186 32..96 100 <- Minus
arm_3L 9489390..9489931 344..885 100 <- Minus
arm_3L 9489998..9490148 193..343 100 <- Minus
arm_3L 9490216..9490311 97..192 100 <- Minus

BO13693.complete Sequence

1447 bp assembled on 2006-10-11

GenBank Submission: FJ632912

> BO13693.complete
GAAGTTATCAGTCGACATGGTTAACATAGTGGACAGCGGGTCGAAGCATG
CGCCCCAGGAAATGGAGCAATTCCTGCCCGGCGAAGGAAAAGTCATGTAC
AAAATCCAACCCCGAAAGTCGGATACCGAGCAGGCCTTGGCTGGAAATGA
CTTTGATCCTTTCGCATTGCGGGACAATCCGCATCCAACAACCGATAATG
AAACTCTCACGCATTTGCTTAAGGCCTCCTTGGGAACCGGTATCCTGGGC
ATGCCATTTGCCTTCATGTGCTCCGGTCTCATCATGGGAATCTTCTCCAC
CATTTTCACCGCCTTTATATGCACGCACTGCAGTTACGTGTTGGTAAAAT
GCGGACACAAGTTGTACTACAGAACTCGCCGCACCAAGATGACCTTTGCC
GAAATTGCCGAGGCTGCCTTCCAAAAAGGACCAAAATGGTGCCGTGGCTT
CGCGCCAGTGGCCAAGTTCTCCATCCTGTTTGGTCTGTTCCTGACGTACT
TTGGCACCTGCTCGGTGTACACGGTTATTGTGGCCTCGAACTTTGAGCAG
TTGATTTCCTATTGGACGGGAACGGCAGTGTCGCTGCGCATGCTCATTTG
CATAATGCTGGTGCCGTTGATCCTCATCGCCTGGGTGCCAAATCTCAAGT
ACCTGGCACCCGTGTCGATGGTGGCCAATGTTTTCATGGGCCTGGGACTG
GGCATTACGTTCTACTATCTGGTCCAGGATCTGCCACCAGTGGAGGAGCG
CGAGTCCGTTGTTTGGAGCACACTGCCGCAGTTCTTCTCGATCACCATCT
TTGCAATGGAGGCAATCGGTGTGGTTATGCCGCTGGAGAACAACATGAAG
ACGCCACAGAGTTTCCTCGGAATCTGCGGTGTGCTCAGCCAGGGCATGTC
GGGCGTGACCCTTATTTATATGCTGCTGGGATTCCTTGGATATCTGCGTT
ACGGTTCCGCCACCGGTGAGAGCATCACCCTGAATCTGCCCATCGAGGAG
TGGCCCGCCCAGACGGTGAAGGTGCTCATTTCCCTGGCCGTATATTGCAC
ATTTGGACTGCAGTTCTTTGTGTGCCTGGAGATCATCTGGGATGGCATTA
AGGAGAAGTGCAAGAAGCGCCCGACATTGGTCAACTATGTGCTGCGCACA
GTCCTGGTGACCGCTGCCGTTGTTCTGGCCGTGGCTGTTCCTACAATTGG
CCCATTTATGGGTCTCATCGGTGCCTTCTGCTTCTCCATTCTGGGATTGA
TCTTCCCGGTGGTCATTGAGTTGATTGTCCATTGGGAGAGTGGCTTTGGT
AAATACAACTGGATCCTGTGGAAGAACGCAATCATCACGTTGTGCGGCAT
TGGCGCTCTTGTTTTCGGCACCCAGGCAGCCATCAAGGATATTGTGAAAG
CCTACAGTAATAATGAAAACGTCGGAGAAGCAAGCTTTCTAGACCAT

BO13693.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:29:20
Subject Length Description Subject Range Query Range Score Percent Strand
path-RD 1416 CG3424-PD 1..1413 17..1429 7065 100 Plus
path-RA 1416 CG3424-PA 1..1413 17..1429 7065 100 Plus
path-RE 1377 CG3424-PE 42..1374 97..1429 6665 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:29:21
Subject Length Description Subject Range Query Range Score Percent Strand
path-RD 3122 CG3424-RD 584..1996 17..1429 7065 100 Plus
path-RA 2772 CG3424-RA 234..1646 17..1429 7065 100 Plus
path-RE 2532 CG3424-RE 74..1406 97..1429 6665 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:29:17
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 9495915..9496832 1260..343 4590 100 Minus
3L 28110227 3L 9495681..9495852 1429..1258 860 100 Minus
3L 28110227 3L 9496895..9497048 346..193 770 100 Minus
3L 28110227 3L 9497116..9497211 192..97 480 100 Minus
3L 28110227 3L 9499020..9499087 98..31 340 100 Minus
Blast to na_te.dros performed on 2014-11-26 16:29:18 has no hits.

BO13693.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:45:06 Download gff for BO13693.complete
Subject Subject Range Query Range Percent Splice Strand
path-RA 1..1416 17..1430 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:59:05 Download gff for BO13693.complete
Subject Subject Range Query Range Percent Splice Strand
path-RA 228..1647 8..1429 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:02:12 Download gff for BO13693.complete
Subject Subject Range Query Range Percent Splice Strand
path-RA 234..1646 17..1431 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:45:06 Download gff for BO13693.complete
Subject Subject Range Query Range Percent Splice Strand
path-RA 228..1647 8..1429 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:20:21 Download gff for BO13693.complete
Subject Subject Range Query Range Percent Splice Strand
path-RA 234..1646 17..1431 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:20:21 Download gff for BO13693.complete
Subject Subject Range Query Range Percent Splice Strand
3L 9495679..9495851 1259..1431 98 <- Minus
3L 9495917..9496831 344..1258 100 <- Minus
3L 9496898..9497048 193..343 100 <- Minus
3L 9497116..9497211 97..192 100 <- Minus
3L 9499022..9499086 32..96 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:02:12 Download gff for BO13693.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 9490216..9490311 97..192 100 <- Minus
arm_3L 9492122..9492186 32..96 100 <- Minus
arm_3L 9488779..9488951 1259..1431 98 <- Minus
arm_3L 9489017..9489931 344..1258 100 <- Minus
arm_3L 9489998..9490148 193..343 100 <- Minus

BO13693.pep Sequence

Translation from 16 to 1447

> BO13693.pep
MVNIVDSGSKHAPQEMEQFLPGEGKVMYKIQPRKSDTEQALAGNDFDPFA
LRDNPHPTTDNETLTHLLKASLGTGILGMPFAFMCSGLIMGIFSTIFTAF
ICTHCSYVLVKCGHKLYYRTRRTKMTFAEIAEAAFQKGPKWCRGFAPVAK
FSILFGLFLTYFGTCSVYTVIVASNFEQLISYWTGTAVSLRMLICIMLVP
LILIAWVPNLKYLAPVSMVANVFMGLGLGITFYYLVQDLPPVEERESVVW
STLPQFFSITIFAMEAIGVVMPLENNMKTPQSFLGICGVLSQGMSGVTLI
YMLLGFLGYLRYGSATGESITLNLPIEEWPAQTVKVLISLAVYCTFGLQF
FVCLEIIWDGIKEKCKKRPTLVNYVLRTVLVTAAVVLAVAVPTIGPFMGL
IGAFCFSILGLIFPVVIELIVHWESGFGKYNWILWKNAIITLCGIGALVF
GTQAAIKDIVKAYSNNENVGEASFLDH

BO13693.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:06:01
Subject Length Description Subject Range Query Range Score Percent Strand
path-PD 471 CG3424-PD 1..471 1..471 2465 100 Plus
path-PA 471 CG3424-PA 1..471 1..471 2465 100 Plus
path-PE 458 CG3424-PE 2..458 15..471 2331 97.6 Plus
CG43693-PF 455 CG43693-PF 18..453 30..465 912 43.3 Plus
CG43693-PC 482 CG43693-PC 45..480 30..465 912 43.3 Plus