Clone BO13694 Report

Search the DGRC for BO13694

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:136
Well:94
Vector:pDNR-Dual
Associated Gene/Transcriptscf-RA
Protein status:BO13694.pep: validated full length
Sequenced Size:1021

Clone Sequence Records

BO13694.3prime Sequence

849 bp (798 high quality bases) assembled on 2006-05-08

> BO13694.3prime
ATGGTCTAGAAAGCTTGCGAACTCATCGTGGCGGGCCAAGGCCTCGCCGA
AATCGGTGGCCTGGGAGCCGACGAAAACGTCGTACTTGTCTAGTATTTCC
TCCTTTGTCAACTTATCATCGTGGTCCGCATCGGCCTCGAACAGCAGGTG
CTTGGCCTCCGCCTCCGAATGATCGAAGTCATGGGGCGCAATCCACTGCT
TCACTTCCTCCTCGTTCAAATAACCATCTTTGTCCAGGTCGCGATGTGTG
GAGAACGCCTCCCTTTCGTTAGCCACCCACTCGGGCTCCTCGTCTTCCGC
GCCCGTCGATCGGTACATGTCGCCAATGTACTCGTCCACCGAGATCTTGC
CATCGTGGTCCTTGTCCAGATCGGTAATGGTCTCGCGCAGAACCACACCC
TTCATGCTGGGATGGTCCTCGGGGTGCAGGAAGGCGGTAAACTCATCCTT
GGTGAGATTGTCATCCAAGTCCTGGTCGGCCACCGACCAGCGGTACCGAT
CGCGTTTCAGCAGGCTCTTGTAGCTGACTCCATTTTCCTCCTGTTCCTTC
TCGTCGGGGCTCAGATCATCCATGAAGCCGTAGACAGTCTGCATGTAGGA
ATCCCAGCTTATGGTCTCATTGTTGTCCGGATTGTGCTGCTTCCACACGC
GACCCACGTCTTCTTCGATGTAGCGCCTCTGGGTGTAGGCGATCCAGTTC
TTTAGCTCCGCCAATGTGACTGACCCGTCCTTGTTCTCGTCGATTCGGTC
CACAATGACGCCCCATCTCCGCCTGCTCTCCTCGGGTGTCAGGCTGTCGA
ACTTCTTGGACTCGTCCGGGCCCAAGAAGGCTTCGTGGTCAAACTGGGC

BO13694.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:09:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG9148-PC 990 scf-RC 157..987 849..19 4130 99.8 Minus
CG9148-PA 990 scf-RA 157..987 849..19 4130 99.8 Minus
CG9148-PB 579 scf-RB 1..576 594..19 2880 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:52:02
Subject Length Description Subject Range Query Range Score Percent Strand
scf-RA 1600 CG9148-RA 211..1041 849..19 4140 99.9 Minus
scf-RB 1386 CG9148-RB 1..827 845..19 4120 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:51:55
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1299318..1299830 531..19 2565 100 Minus
3L 28110227 3L 1298882..1299201 849..530 1585 99.7 Minus
Blast to na_te.dros performed on 2015-02-10 15:51:59 has no hits.

BO13694.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:10:28 Download gff for BO13694.3prime
Subject Subject Range Query Range Percent Splice Strand
scf-PC 157..990 18..849 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:59:03 Download gff for BO13694.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9148-PA 157..990 18..849 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 23:17:13 Download gff for BO13694.3prime
Subject Subject Range Query Range Percent Splice Strand
scf-RA 211..1041 19..849 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:25:44 Download gff for BO13694.3prime
Subject Subject Range Query Range Percent Splice Strand
scf-RA 211..1041 19..849 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:25:44 Download gff for BO13694.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 1298882..1299200 531..849 99 -> Minus
3L 1299319..1299830 19..530 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 23:17:13 Download gff for BO13694.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1298882..1299200 531..849 99 -> Minus
arm_3L 1299319..1299830 19..530 100   Minus

BO13694.5prime Sequence

898 bp (803 high quality bases) assembled on 2006-05-08

> BO13694.5prime
GAAGTTATCAGTCGACATGGCTAGAACCCGAATTCAGATGCTGCTACTTG
TTGTTGCGCTGACGGCGGTGATAAGTGGAGCAAGTGCCTCCAGCATACCG
GAAGAGCTGCCCCACAATCCGCTCGAGCACGACCCCCTGCACCCCAGGCA
CTTCGACGGGGGCGAGCACAATGCCCAGTTTGACCACGAAGCCTTCTTGG
GCCCGGACGAGTCCAAGAAGTTCGACAGCCTGACACCCGAGGAGAGCAGG
CGGAGATTGGGCGTCATTGTGGACCGAATCGACGAGAACAAGGACGGGTC
AGTCACATTGGCGGAGCTAAAGAACTGGATCGCCTACACCCAGAGGCGCT
ACATCGAAGAAGACGTGGGTCGCGTGTGGAAGCAGCACAATCCGGACAAC
AATGAGACCATAAGCTGGGATTCCTACATGCAGACTGTCTACGGCTTCAT
GGATGATCTGAGCCCCGACGAGAAGGAACAGGAGGAAAATGGAGTCAGCT
ACAAGAGCCTGCTGAAACGCGATCGGTACCGCTGGTCGGTGGCCGACCAG
GACTTGGATGACAATCTCACCAAGGATGAGTTTACCGCCTTCCTGCACCC
CGAGGACCATCCCAGCATGAAGGGTGTGGTTCTGCGCGAGACCATTACCG
ATCTGGACAAGGACCACGATGGCAAGATCTCGGTGGACGAGTACATTGGC
GACATGTACCGATCGACGGGCGCGGAAGACGAGGAGCCCGAGTGGGTGGC
TAACGAAAGGGAGGCGTTCTCCACACATCGCGACCTGNACAAAGATGGTT
ATTTGAACGAGGAGGAAGTGAAGCAGTGGATTGCGCCCCATGACTTCGAT
CATTCGGAGGCGGAGGCCAAGCACCTGCTGTTCGAGGCCGATGCGGAC

BO13694.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:09:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG9148-PC 990 scf-RC 1..882 17..898 4391 99.8 Plus
CG9148-PA 990 scf-RA 1..882 17..898 4391 99.8 Plus
CG9148-PB 579 scf-RB 1..471 428..898 2336 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:06:31
Subject Length Description Subject Range Query Range Score Percent Strand
scf-RA 1600 CG9148-RA 55..936 17..898 4399 99.9 Plus
scf-RB 1386 CG9148-RB 1..722 177..898 3599 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:06:25
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1298726..1299201 17..492 2380 100 Plus
3L 28110227 3L 1299318..1299725 491..898 2029 99.8 Plus
Blast to na_te.dros performed on 2015-02-12 06:06:28 has no hits.

BO13694.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:10:29 Download gff for BO13694.5prime
Subject Subject Range Query Range Percent Splice Strand
scf-PC 1..882 17..898 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:59:05 Download gff for BO13694.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9148-PA 1..882 17..898 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:01:02 Download gff for BO13694.5prime
Subject Subject Range Query Range Percent Splice Strand
scf-RA 46..936 8..898 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:53:45 Download gff for BO13694.5prime
Subject Subject Range Query Range Percent Splice Strand
scf-RA 46..936 8..898 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:53:45 Download gff for BO13694.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 1298717..1299200 8..491 99 -> Plus
3L 1299319..1299725 492..898 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:01:02 Download gff for BO13694.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1298717..1299200 8..491 99 -> Plus
arm_3L 1299319..1299725 492..898 99   Plus

BO13694.complete Sequence

1021 bp assembled on 2006-10-11

GenBank Submission: FJ632913

> BO13694.complete
GAAGTTATCAGTCGACATGGCTAGAACCCGAATTCAGATGCTGCTACTTG
TTGTTGCGCTGACGGCGGTGATAAGTGGAGCAAGTGCCTCCAGCATACCG
GAAGAGCTGCCCCACAATCCGCTCGAGCACGACCCCCTGCACCCCAGGCA
CTTCGACGGGGGCGAGCACAATGCCCAGTTTGACCACGAAGCCTTCTTGG
GCCCGGACGAGTCCAAGAAGTTCGACAGCCTGACACCCGAGGAGAGCAGG
CGGAGATTGGGCGTCATTGTGGACCGAATCGACGAGAACAAGGACGGGTC
AGTCACATTGGCGGAGCTAAAGAACTGGATCGCCTACACCCAGAGGCGCT
ACATCGAAGAAGACGTGGGTCGCGTGTGGAAGCAGCACAATCCGGACAAC
AATGAGACCATAAGCTGGGATTCCTACATGCAGACTGTCTACGGCTTCAT
GGATGATCTGAGCCCCGACGAGAAGGAACAGGAGGAAAATGGAGTCAGCT
ACAAGAGCCTGCTGAAACGCGATCGGTACCGCTGGTCGGTGGCCGACCAG
GACTTGGATGACAATCTCACCAAGGATGAGTTTACCGCCTTCCTGCACCC
CGAGGACCATCCCAGCATGAAGGGTGTGGTTCTGCGCGAGACCATTACCG
ATCTGGACAAGGACCACGATGGCAAGATCTCGGTGGACGAGTACATTGGC
GACATGTACCGATCGACGGGCGCGGAAGACGAGGAGCCCGAGTGGGTGGC
TAACGAAAGGGAGGCGTTCTCCACACATCGCGACCTGGACAAAGATGGTT
ATTTGAACGAGGAGGAAGTGAAGCAGTGGATTGCGCCCCATGACTTCGAT
CATTCGGAGGCGGAGGCCAAGCACCTGCTGTTCGAGGCCGATGCGGACCA
CGATGATAAGTTGACAAAGGAGGAAATACTAGACAAGTACGACGTTTTCG
TCGGCTCCCAGGCCACCGATTTCGGCGAGGCCTTGGCCCGCCACGATGAG
TTCGCAAGCTTTCTAGACCAT

BO13694.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:52:49
Subject Length Description Subject Range Query Range Score Percent Strand
scf-RA 990 CG9148-PA 1..987 17..1003 4935 100 Plus
scf-RB 579 CG9148-PB 1..576 428..1003 2880 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:52:51
Subject Length Description Subject Range Query Range Score Percent Strand
scf-RA 1600 CG9148-RA 55..1041 17..1003 4935 100 Plus
scf-RB 1386 CG9148-RB 1..827 177..1003 4135 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 12:52:47
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1299318..1299830 491..1003 2565 100 Plus
3L 28110227 3L 1298726..1299201 17..492 2380 100 Plus
Blast to na_te.dros performed on 2014-11-27 12:52:48 has no hits.

BO13694.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:45:08 Download gff for BO13694.complete
Subject Subject Range Query Range Percent Splice Strand
scf-RA 1..990 17..1004 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:59:07 Download gff for BO13694.complete
Subject Subject Range Query Range Percent Splice Strand
scf-RA 100..1095 8..1003 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:25:15 Download gff for BO13694.complete
Subject Subject Range Query Range Percent Splice Strand
scf-RA 55..1041 17..1005 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:45:08 Download gff for BO13694.complete
Subject Subject Range Query Range Percent Splice Strand
scf-RA 100..1095 8..1003 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:06:37 Download gff for BO13694.complete
Subject Subject Range Query Range Percent Splice Strand
scf-RA 55..1041 17..1005 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:06:37 Download gff for BO13694.complete
Subject Subject Range Query Range Percent Splice Strand
3L 1298726..1299200 17..491 100 -> Plus
3L 1299319..1299830 492..1005 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:25:15 Download gff for BO13694.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1298726..1299200 17..491 100 -> Plus
arm_3L 1299319..1299830 492..1005 99   Plus

BO13694.pep Sequence

Translation from 16 to 1021

> BO13694.pep
MARTRIQMLLLVVALTAVISGASASSIPEELPHNPLEHDPLHPRHFDGGE
HNAQFDHEAFLGPDESKKFDSLTPEESRRRLGVIVDRIDENKDGSVTLAE
LKNWIAYTQRRYIEEDVGRVWKQHNPDNNETISWDSYMQTVYGFMDDLSP
DEKEQEENGVSYKSLLKRDRYRWSVADQDLDDNLTKDEFTAFLHPEDHPS
MKGVVLRETITDLDKDHDGKISVDEYIGDMYRSTGAEDEEPEWVANEREA
FSTHRDLDKDGYLNEEEVKQWIAPHDFDHSEAEAKHLLFEADADHDDKLT
KEEILDKYDVFVGSQATDFGEALARHDEFASFLDH

BO13694.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:05:57
Subject Length Description Subject Range Query Range Score Percent Strand
scf-PA 329 CG9148-PA 1..329 1..329 1756 100 Plus
scf-PB 192 CG9148-PB 1..192 138..329 1028 100 Plus
CG31650-PF 342 CG31650-PF 8..332 6..323 552 36.7 Plus
CG31650-PE 342 CG31650-PE 8..332 6..323 552 36.7 Plus
CG31650-PD 342 CG31650-PD 8..332 6..323 552 36.7 Plus