Clone Sequence Records
BO13694.3prime Sequence
849 bp (798 high quality bases) assembled on 2006-05-08
> BO13694.3prime
ATGGTCTAGAAAGCTTGCGAACTCATCGTGGCGGGCCAAGGCCTCGCCGA
AATCGGTGGCCTGGGAGCCGACGAAAACGTCGTACTTGTCTAGTATTTCC
TCCTTTGTCAACTTATCATCGTGGTCCGCATCGGCCTCGAACAGCAGGTG
CTTGGCCTCCGCCTCCGAATGATCGAAGTCATGGGGCGCAATCCACTGCT
TCACTTCCTCCTCGTTCAAATAACCATCTTTGTCCAGGTCGCGATGTGTG
GAGAACGCCTCCCTTTCGTTAGCCACCCACTCGGGCTCCTCGTCTTCCGC
GCCCGTCGATCGGTACATGTCGCCAATGTACTCGTCCACCGAGATCTTGC
CATCGTGGTCCTTGTCCAGATCGGTAATGGTCTCGCGCAGAACCACACCC
TTCATGCTGGGATGGTCCTCGGGGTGCAGGAAGGCGGTAAACTCATCCTT
GGTGAGATTGTCATCCAAGTCCTGGTCGGCCACCGACCAGCGGTACCGAT
CGCGTTTCAGCAGGCTCTTGTAGCTGACTCCATTTTCCTCCTGTTCCTTC
TCGTCGGGGCTCAGATCATCCATGAAGCCGTAGACAGTCTGCATGTAGGA
ATCCCAGCTTATGGTCTCATTGTTGTCCGGATTGTGCTGCTTCCACACGC
GACCCACGTCTTCTTCGATGTAGCGCCTCTGGGTGTAGGCGATCCAGTTC
TTTAGCTCCGCCAATGTGACTGACCCGTCCTTGTTCTCGTCGATTCGGTC
CACAATGACGCCCCATCTCCGCCTGCTCTCCTCGGGTGTCAGGCTGTCGA
ACTTCTTGGACTCGTCCGGGCCCAAGAAGGCTTCGTGGTCAAACTGGGC
BO13694.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:09:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9148-PC | 990 | scf-RC | 157..987 | 849..19 | 4130 | 99.8 | Minus |
CG9148-PA | 990 | scf-RA | 157..987 | 849..19 | 4130 | 99.8 | Minus |
CG9148-PB | 579 | scf-RB | 1..576 | 594..19 | 2880 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:52:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
scf-RA | 1600 | CG9148-RA | 211..1041 | 849..19 | 4140 | 99.9 | Minus |
scf-RB | 1386 | CG9148-RB | 1..827 | 845..19 | 4120 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:51:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 1299318..1299830 | 531..19 | 2565 | 100 | Minus |
3L | 28110227 | 3L | 1298882..1299201 | 849..530 | 1585 | 99.7 | Minus |
Blast to na_te.dros performed on 2015-02-10 15:51:59 has no hits.
BO13694.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:10:28 Download gff for
BO13694.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
scf-PC | 157..990 | 18..849 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:59:03 Download gff for
BO13694.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9148-PA | 157..990 | 18..849 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 23:17:13 Download gff for
BO13694.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
scf-RA | 211..1041 | 19..849 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:25:44 Download gff for
BO13694.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
scf-RA | 211..1041 | 19..849 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:25:44 Download gff for
BO13694.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 1298882..1299200 | 531..849 | 99 | -> | Minus |
3L | 1299319..1299830 | 19..530 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 23:17:13 Download gff for
BO13694.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 1298882..1299200 | 531..849 | 99 | -> | Minus |
arm_3L | 1299319..1299830 | 19..530 | 100 | | Minus |
BO13694.5prime Sequence
898 bp (803 high quality bases) assembled on 2006-05-08
> BO13694.5prime
GAAGTTATCAGTCGACATGGCTAGAACCCGAATTCAGATGCTGCTACTTG
TTGTTGCGCTGACGGCGGTGATAAGTGGAGCAAGTGCCTCCAGCATACCG
GAAGAGCTGCCCCACAATCCGCTCGAGCACGACCCCCTGCACCCCAGGCA
CTTCGACGGGGGCGAGCACAATGCCCAGTTTGACCACGAAGCCTTCTTGG
GCCCGGACGAGTCCAAGAAGTTCGACAGCCTGACACCCGAGGAGAGCAGG
CGGAGATTGGGCGTCATTGTGGACCGAATCGACGAGAACAAGGACGGGTC
AGTCACATTGGCGGAGCTAAAGAACTGGATCGCCTACACCCAGAGGCGCT
ACATCGAAGAAGACGTGGGTCGCGTGTGGAAGCAGCACAATCCGGACAAC
AATGAGACCATAAGCTGGGATTCCTACATGCAGACTGTCTACGGCTTCAT
GGATGATCTGAGCCCCGACGAGAAGGAACAGGAGGAAAATGGAGTCAGCT
ACAAGAGCCTGCTGAAACGCGATCGGTACCGCTGGTCGGTGGCCGACCAG
GACTTGGATGACAATCTCACCAAGGATGAGTTTACCGCCTTCCTGCACCC
CGAGGACCATCCCAGCATGAAGGGTGTGGTTCTGCGCGAGACCATTACCG
ATCTGGACAAGGACCACGATGGCAAGATCTCGGTGGACGAGTACATTGGC
GACATGTACCGATCGACGGGCGCGGAAGACGAGGAGCCCGAGTGGGTGGC
TAACGAAAGGGAGGCGTTCTCCACACATCGCGACCTGNACAAAGATGGTT
ATTTGAACGAGGAGGAAGTGAAGCAGTGGATTGCGCCCCATGACTTCGAT
CATTCGGAGGCGGAGGCCAAGCACCTGCTGTTCGAGGCCGATGCGGAC
BO13694.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:09:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9148-PC | 990 | scf-RC | 1..882 | 17..898 | 4391 | 99.8 | Plus |
CG9148-PA | 990 | scf-RA | 1..882 | 17..898 | 4391 | 99.8 | Plus |
CG9148-PB | 579 | scf-RB | 1..471 | 428..898 | 2336 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:06:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
scf-RA | 1600 | CG9148-RA | 55..936 | 17..898 | 4399 | 99.9 | Plus |
scf-RB | 1386 | CG9148-RB | 1..722 | 177..898 | 3599 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:06:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 1298726..1299201 | 17..492 | 2380 | 100 | Plus |
3L | 28110227 | 3L | 1299318..1299725 | 491..898 | 2029 | 99.8 | Plus |
Blast to na_te.dros performed on 2015-02-12 06:06:28 has no hits.
BO13694.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:10:29 Download gff for
BO13694.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
scf-PC | 1..882 | 17..898 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:59:05 Download gff for
BO13694.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9148-PA | 1..882 | 17..898 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:01:02 Download gff for
BO13694.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
scf-RA | 46..936 | 8..898 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:53:45 Download gff for
BO13694.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
scf-RA | 46..936 | 8..898 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:53:45 Download gff for
BO13694.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 1298717..1299200 | 8..491 | 99 | -> | Plus |
3L | 1299319..1299725 | 492..898 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:01:02 Download gff for
BO13694.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 1298717..1299200 | 8..491 | 99 | -> | Plus |
arm_3L | 1299319..1299725 | 492..898 | 99 | | Plus |
BO13694.complete Sequence
1021 bp assembled on 2006-10-11
GenBank Submission: FJ632913
> BO13694.complete
GAAGTTATCAGTCGACATGGCTAGAACCCGAATTCAGATGCTGCTACTTG
TTGTTGCGCTGACGGCGGTGATAAGTGGAGCAAGTGCCTCCAGCATACCG
GAAGAGCTGCCCCACAATCCGCTCGAGCACGACCCCCTGCACCCCAGGCA
CTTCGACGGGGGCGAGCACAATGCCCAGTTTGACCACGAAGCCTTCTTGG
GCCCGGACGAGTCCAAGAAGTTCGACAGCCTGACACCCGAGGAGAGCAGG
CGGAGATTGGGCGTCATTGTGGACCGAATCGACGAGAACAAGGACGGGTC
AGTCACATTGGCGGAGCTAAAGAACTGGATCGCCTACACCCAGAGGCGCT
ACATCGAAGAAGACGTGGGTCGCGTGTGGAAGCAGCACAATCCGGACAAC
AATGAGACCATAAGCTGGGATTCCTACATGCAGACTGTCTACGGCTTCAT
GGATGATCTGAGCCCCGACGAGAAGGAACAGGAGGAAAATGGAGTCAGCT
ACAAGAGCCTGCTGAAACGCGATCGGTACCGCTGGTCGGTGGCCGACCAG
GACTTGGATGACAATCTCACCAAGGATGAGTTTACCGCCTTCCTGCACCC
CGAGGACCATCCCAGCATGAAGGGTGTGGTTCTGCGCGAGACCATTACCG
ATCTGGACAAGGACCACGATGGCAAGATCTCGGTGGACGAGTACATTGGC
GACATGTACCGATCGACGGGCGCGGAAGACGAGGAGCCCGAGTGGGTGGC
TAACGAAAGGGAGGCGTTCTCCACACATCGCGACCTGGACAAAGATGGTT
ATTTGAACGAGGAGGAAGTGAAGCAGTGGATTGCGCCCCATGACTTCGAT
CATTCGGAGGCGGAGGCCAAGCACCTGCTGTTCGAGGCCGATGCGGACCA
CGATGATAAGTTGACAAAGGAGGAAATACTAGACAAGTACGACGTTTTCG
TCGGCTCCCAGGCCACCGATTTCGGCGAGGCCTTGGCCCGCCACGATGAG
TTCGCAAGCTTTCTAGACCAT
BO13694.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:52:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
scf-RA | 990 | CG9148-PA | 1..987 | 17..1003 | 4935 | 100 | Plus |
scf-RB | 579 | CG9148-PB | 1..576 | 428..1003 | 2880 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:52:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
scf-RA | 1600 | CG9148-RA | 55..1041 | 17..1003 | 4935 | 100 | Plus |
scf-RB | 1386 | CG9148-RB | 1..827 | 177..1003 | 4135 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 12:52:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 1299318..1299830 | 491..1003 | 2565 | 100 | Plus |
3L | 28110227 | 3L | 1298726..1299201 | 17..492 | 2380 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 12:52:48 has no hits.
BO13694.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:45:08 Download gff for
BO13694.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
scf-RA | 1..990 | 17..1004 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:59:07 Download gff for
BO13694.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
scf-RA | 100..1095 | 8..1003 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:25:15 Download gff for
BO13694.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
scf-RA | 55..1041 | 17..1005 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:45:08 Download gff for
BO13694.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
scf-RA | 100..1095 | 8..1003 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:06:37 Download gff for
BO13694.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
scf-RA | 55..1041 | 17..1005 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:06:37 Download gff for
BO13694.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 1298726..1299200 | 17..491 | 100 | -> | Plus |
3L | 1299319..1299830 | 492..1005 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:25:15 Download gff for
BO13694.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 1298726..1299200 | 17..491 | 100 | -> | Plus |
arm_3L | 1299319..1299830 | 492..1005 | 99 | | Plus |
BO13694.pep Sequence
Translation from 16 to 1021
> BO13694.pep
MARTRIQMLLLVVALTAVISGASASSIPEELPHNPLEHDPLHPRHFDGGE
HNAQFDHEAFLGPDESKKFDSLTPEESRRRLGVIVDRIDENKDGSVTLAE
LKNWIAYTQRRYIEEDVGRVWKQHNPDNNETISWDSYMQTVYGFMDDLSP
DEKEQEENGVSYKSLLKRDRYRWSVADQDLDDNLTKDEFTAFLHPEDHPS
MKGVVLRETITDLDKDHDGKISVDEYIGDMYRSTGAEDEEPEWVANEREA
FSTHRDLDKDGYLNEEEVKQWIAPHDFDHSEAEAKHLLFEADADHDDKLT
KEEILDKYDVFVGSQATDFGEALARHDEFASFLDH
BO13694.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:05:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
scf-PA | 329 | CG9148-PA | 1..329 | 1..329 | 1756 | 100 | Plus |
scf-PB | 192 | CG9148-PB | 1..192 | 138..329 | 1028 | 100 | Plus |
CG31650-PF | 342 | CG31650-PF | 8..332 | 6..323 | 552 | 36.7 | Plus |
CG31650-PE | 342 | CG31650-PE | 8..332 | 6..323 | 552 | 36.7 | Plus |
CG31650-PD | 342 | CG31650-PD | 8..332 | 6..323 | 552 | 36.7 | Plus |