Clone BO13695 Report

Search the DGRC for BO13695

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:136
Well:95
Vector:pDNR-Dual
Associated Gene/TranscriptPal-RA
Protein status:BO13695.pep: validated full length
Sequenced Size:1252

Clone Sequence Records

BO13695.3prime Sequence

785 bp (743 high quality bases) assembled on 2006-05-08

> BO13695.3prime
ATGGTCTAGAAAGCTTGCGGCCAGCACATACTTCCACACTCGGTTCGTCT
GGTGATTGGTTCCGATCTCGGTCACATACAGCGCCGATCCGTTGACACTG
ACCGCCATGGAGTGCGGATTCTTGAACTCGCCCCAGTGCCCGATGATCGT
CTCCGAGCGCGGATCGATGGTGAATCCCCGCACCGGCAGCATGGATGTGG
GTCCATTAACGGCGAACACTATGTCCCCGAAGCTGGCCACTCCGAAGACG
CGACCCAGGTCCGGTTCCTGGATGGTGGCCGCCGGTTCACCCTCACCGTG
GGAGGATATCAAGCCAGCTTTGGGACAGACCACCCTCATGTTCTCCCTGT
CGGCGATGCACAGTAGATCGAGGTGTTCCAGCAAGGTGATGGCGTGTGGC
ACCTGCAAAGAGAGGAATTCGGGTGGCTGGGGAATCGTTCGTAGCAGCTT
GCCAGCGGCATTGAACTTAAGTATGCGGCTGTTGCAGTAACCATCGGCGA
TGAAGAACTCTCCGGTGGTCGCCACTGCAATGGATGTGGGCTTGCACAGA
TGCTTGACGGATGATCCTGGCCTGAAGCGCTTGCCAATGGTCAGCAGAGG
CTTGTTGCTGAAGGGCTTGAACTTGAAAGCCTGGTGCATGGCCACATCCG
TGATCCAGTAATTCCCGTGCAAGTTCGATGGGCAGGCCATGCGGCATGTA
GAACATGTTCGATCCCCAACCCGACTTGATGGCGCCCGTCTTTGCGTCCA
GCACGTAAATGGTGTTTCTCCTTGATGGGCCCGTA

BO13695.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:09:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG5472-PA 1221 Pal-RA 563..1218 674..19 3255 99.8 Minus
CG5472-PB 1215 Pal-RB 610..1212 621..19 2990 99.8 Minus
CG5472-PC 1215 Pal-RC 610..1212 621..19 2990 99.8 Minus
CG5472-PA 1221 Pal-RA 472..563 766..675 410 97.8 Minus
CG5472-PB 1215 Pal-RB 472..563 766..675 410 97.8 Minus
CG5472-PC 1215 Pal-RC 472..563 766..675 410 97.8 Minus
CG5472-PB 1215 Pal-RB 563..615 674..622 265 100 Minus
CG5472-PC 1215 Pal-RC 563..615 674..622 265 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 04:17:56
Subject Length Description Subject Range Query Range Score Percent Strand
Pal2-RE 2304 CG5472-RE 672..1436 785..19 3740 99.3 Minus
Pal2-RD 1657 CG5472-RD 560..1324 785..19 3740 99.3 Minus
Pal2-RA 1938 CG5472-RA 560..1324 785..19 3740 99.3 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 04:17:49
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 23689670..23689970 319..19 1505 100 Minus
2R 25286936 2R 23688970..23689131 785..622 690 97.6 Minus
2R 25286936 2R 23689191..23689306 623..508 580 100 Minus
2R 25286936 2R 23689513..23689613 420..320 505 100 Minus
2R 25286936 2R 23689367..23689456 509..420 435 98.9 Minus
Blast to na_te.dros performed on 2015-02-01 04:17:53 has no hits.

BO13695.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:10:30 Download gff for BO13695.3prime
Subject Subject Range Query Range Percent Splice Strand
Pal-PA 455..1221 16..784 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:59:06 Download gff for BO13695.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5472-PA 455..1221 16..784 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 15:03:50 Download gff for BO13695.3prime
Subject Subject Range Query Range Percent Splice Strand
Pal2-RA 673..1441 13..784 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 05:45:43 Download gff for BO13695.3prime
Subject Subject Range Query Range Percent Splice Strand
Pal2-RA 561..1329 13..784 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 05:45:43 Download gff for BO13695.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 23688971..23689135 616..784 95 -> Minus
2R 23689199..23689306 508..615 100 -> Minus
2R 23689369..23689456 420..507 98 -> Minus
2R 23689514..23689613 320..419 100 -> Minus
2R 23689670..23689975 13..319 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 15:03:50 Download gff for BO13695.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19577037..19577136 320..419 100 -> Minus
arm_2R 19576494..19576658 616..784 95 -> Minus
arm_2R 19576722..19576829 508..615 100 -> Minus
arm_2R 19576892..19576979 420..507 98 -> Minus
arm_2R 19577193..19577498 13..319 99   Minus

BO13695.5prime Sequence

826 bp (800 high quality bases) assembled on 2006-05-08

> BO13695.5prime
GAAGTTATCAGTCGACATGTCGCGTCTCCTGTTCGTGGCGCTGCTAGCCA
TAAGCTTGGGATATGTGGCGTCCAGCAGCAGCAACCACCTGCCAGCGGGC
TTGGCCATGGACCTGGGACCAGGTGTCAACCTCAACGAGCGCTTCTTCGA
CCAGGTGCGGGCGCTCATCAAGCGGAGGCTCCAGGAGAAGGGGCTCGCGA
AGCCGGAACAGCCAGAGCTGGCAATGCCACTGACCGACGATGATGCAGTG
GCCCTGCAGAACCAACGCAGCTACGACAACGTGCCACTTCCGGCGGCCAG
TGTGCCGACTCCCGTGCTCGTGGAGAACTGGCCCACCGAGCAGCACAGCT
TTGGCCAGGTCACCGCCGTGGCCGTGGATCCGCAGGGTAGTCCGGTGGTT
TTCCATCGCGCCGAGCGCTACTGGGATGTAAACACATTCAACGAGAGCAA
TATATACTACCTTATTGAGTACGGGCCCATCAAGGAGAACACCATCTACG
TGCTGGACGCAAAGACGGGCGCCATCAAGTCGGGTTGGGGATCGAACATG
TTCTACATGCCGCATGGCCTGACCATCGACTTGCACGGGAATTACTGGAT
CACGGATGTGGCCATGCACCAGGCTTTCAAGTTCAAGCCCTTCAGCAACA
AGCCTCTGCTGACCATTGGCAAGCGCTTCAGGCCAGGATCATCCGTCAAG
CATCTGTGCAAGCCCACATCCATTGCAGTGGCGACCACCGGAGAGTTCTT
CATCGCCGATGGTTACTGCAACAGCCGCATACTTAAGTTCAATGCCGCTG
GCAAGCTGCTACGAACGATTCCCCAG

BO13695.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:09:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG5472-PA 1221 Pal-RA 1..810 17..826 4025 99.8 Plus
CG5472-PB 1215 Pal-RB 1..615 17..631 3075 100 Plus
CG5472-PC 1215 Pal-RC 1..615 17..631 3075 100 Plus
CG5472-PB 1215 Pal-RB 610..804 632..826 950 99.4 Plus
CG5472-PC 1215 Pal-RC 610..804 632..826 950 99.4 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:59:04
Subject Length Description Subject Range Query Range Score Percent Strand
Pal2-RE 2304 CG5472-RE 219..1028 17..826 4035 99.9 Plus
Pal2-RD 1657 CG5472-RD 107..916 17..826 4035 99.9 Plus
Pal2-RA 1938 CG5472-RA 107..916 17..826 4035 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:58:54
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 23688295..23688710 17..432 2080 100 Plus
2R 25286936 2R 23688933..23689131 433..631 995 100 Plus
2R 25286936 2R 23689191..23689306 630..745 580 100 Plus
2R 25286936 2R 23689367..23689449 744..826 400 98.8 Plus
Blast to na_te.dros performed on 2015-02-13 01:58:59 has no hits.

BO13695.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:10:31 Download gff for BO13695.5prime
Subject Subject Range Query Range Percent Splice Strand
Pal-PA 1..810 17..826 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:59:07 Download gff for BO13695.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5472-PA 1..810 17..826 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 08:50:27 Download gff for BO13695.5prime
Subject Subject Range Query Range Percent Splice Strand
Pal2-RA 213..1028 9..826 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:37:53 Download gff for BO13695.5prime
Subject Subject Range Query Range Percent Splice Strand
Pal2-RA 101..916 9..826 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:37:53 Download gff for BO13695.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 23688289..23688710 9..432 99 -> Plus
2R 23688933..23689135 433..637 98 -> Plus
2R 23689199..23689306 638..745 100 -> Plus
2R 23689369..23689449 746..826 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 08:50:27 Download gff for BO13695.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19575812..19576233 9..432 99 -> Plus
arm_2R 19576456..19576658 433..637 98 -> Plus
arm_2R 19576722..19576829 638..745 100 -> Plus
arm_2R 19576892..19576972 746..826 98   Plus

BO13695.complete Sequence

1252 bp assembled on 2006-10-11

GenBank Submission: FJ632914

> BO13695.complete
GAAGTTATCAGTCGACATGTCGCGTCTCCTGTTCGTGGCGCTGCTAGCCA
TAAGCTTGGGATATGTGGCGTCCAGCAGCAGCAACCACCTGCCAGCGGGC
TTGGCCATGGACCTGGGACCAGGTGTCAACCTCAACGAGCGCTTCTTCGA
CCAGGTGCGGGCGCTCATCAAGCGGAGGCTCCAGGAGAAGGGGCTCGCGA
AGCCGGAACAGCCAGAGCTGGCAATGCCACTGACCGACGATGATGCAGTG
GCCCTGCAGAACCAACGCAGCTACGACAACGTGCCACTTCCGGCGGCCAG
TGTGCCGACTCCCGTGCTCGTGGAGAACTGGCCCACCGAGCAGCACAGCT
TTGGCCAGGTCACCGCCGTGGCCGTGGATCCGCAGGGTAGTCCGGTGGTT
TTCCATCGCGCCGAGCGCTACTGGGATGTAAACACATTCAACGAGAGCAA
TATATACTACCTTATTGAGTACGGGCCCATCAAGGAGAACACCATCTACG
TGCTGGACGCAAAGACGGGCGCCATCAAGTCGGGTTGGGGATCGAACATG
TTCTACATGCCGCATGGCCTGACCATCGACTTGCACGGGAATTACTGGAT
CACGGATGTGGCCATGCACCAGGCTTTCAAGTTCAAGCCCTTCAGCAACA
AGCCTCTGCTGACCATTGGCAAGCGCTTCAGGCCAGGATCATCCGTCAAG
CATCTGTGCAAGCCCACATCCATTGCAGTGGCGACCACCGGAGAGTTCTT
CATCGCCGATGGTTACTGCAACAGCCGCATACTTAAGTTCAATGCCGCTG
GCAAGCTGCTACGAACGATTCCCCAGCCACCCGAATTCCTCTCTTTGCAG
GTGCCACACGCCATCACCTTGCTGGAACACCTCGATCTACTGTGCATCGC
CGACAGGGAGAACATGAGGGTGGTCTGTCCCAAAGCTGGCTTGATATCCT
CCCACGGTGAGGGTGAACCGGCGGCCACCATCCAGGAACCGGACCTGGGT
CGCGTCTTCGGAGTGGCCAGCTTCGGGGACATAGTGTTCGCCGTTAATGG
ACCCACATCCATGCTGCCGGTGCGGGGATTCACCATCGATCCGCGCTCGG
AGACGATCATCGGGCACTGGGGCGAGTTCAAGAATCCGCACTCCATGGCG
GTCAGTGTCAACGGATCGGCGCTGTATGTGACCGAGATCGGAACCAATCA
CCAGACGAACCGAGTGTGGAAGTATGTGCTGGCCGCAAGCTTTCTAGACC
AT

BO13695.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:47:02
Subject Length Description Subject Range Query Range Score Percent Strand
Pal2-RE 1221 CG5472-PE 1..1218 17..1234 6075 99.9 Plus
Pal2-RD 1221 CG5472-PD 1..1218 17..1234 6075 99.9 Plus
Pal2-RA 1221 CG5472-PA 1..1218 17..1234 6075 99.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:47:03
Subject Length Description Subject Range Query Range Score Percent Strand
Pal2-RE 2304 CG5472-RE 219..1436 17..1234 6075 99.9 Plus
Pal2-RD 1657 CG5472-RD 107..1324 17..1234 6075 99.9 Plus
Pal2-RA 1938 CG5472-RA 107..1324 17..1234 6075 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:47:00
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 23688295..23688710 17..432 2080 100 Plus
2R 25286936 2R 23689670..23689970 934..1234 1505 100 Plus
2R 25286936 2R 23688933..23689131 433..631 995 100 Plus
2R 25286936 2R 23689191..23689306 630..745 580 100 Plus
2R 25286936 2R 23689513..23689613 833..933 505 100 Plus
2R 25286936 2R 23689367..23689456 744..833 435 98.9 Plus
Blast to na_te.dros performed on 2014-11-27 16:47:01 has no hits.

BO13695.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:44:49 Download gff for BO13695.complete
Subject Subject Range Query Range Percent Splice Strand
Pal-RA 1..1221 17..1237 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:58:44 Download gff for BO13695.complete
Subject Subject Range Query Range Percent Splice Strand
Pal-RA 132..1360 9..1240 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:59:13 Download gff for BO13695.complete
Subject Subject Range Query Range Percent Splice Strand
Pal2-RA 219..1436 17..1236 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:44:50 Download gff for BO13695.complete
Subject Subject Range Query Range Percent Splice Strand
Pal-RA 132..1360 9..1240 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:26:49 Download gff for BO13695.complete
Subject Subject Range Query Range Percent Splice Strand
Pal2-RA 107..1324 17..1236 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:26:49 Download gff for BO13695.complete
Subject Subject Range Query Range Percent Splice Strand
2R 23688933..23689135 433..637 98 -> Plus
2R 23689199..23689306 638..745 100 -> Plus
2R 23689369..23689456 746..833 98 -> Plus
2R 23689514..23689613 834..933 100 -> Plus
2R 23689670..23689970 934..1236 99   Plus
2R 23688295..23688710 17..432 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:59:13 Download gff for BO13695.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19575818..19576233 17..432 100 -> Plus
arm_2R 19576456..19576658 433..637 98 -> Plus
arm_2R 19576722..19576829 638..745 100 -> Plus
arm_2R 19576892..19576979 746..833 98 -> Plus
arm_2R 19577037..19577136 834..933 100 -> Plus
arm_2R 19577193..19577493 934..1236 99   Plus

BO13695.pep Sequence

Translation from 16 to 1252

> BO13695.pep
MSRLLFVALLAISLGYVASSSSNHLPAGLAMDLGPGVNLNERFFDQVRAL
IKRRLQEKGLAKPEQPELAMPLTDDDAVALQNQRSYDNVPLPAASVPTPV
LVENWPTEQHSFGQVTAVAVDPQGSPVVFHRAERYWDVNTFNESNIYYLI
EYGPIKENTIYVLDAKTGAIKSGWGSNMFYMPHGLTIDLHGNYWITDVAM
HQAFKFKPFSNKPLLTIGKRFRPGSSVKHLCKPTSIAVATTGEFFIADGY
CNSRILKFNAAGKLLRTIPQPPEFLSLQVPHAITLLEHLDLLCIADRENM
RVVCPKAGLISSHGEGEPAATIQEPDLGRVFGVASFGDIVFAVNGPTSML
PVRGFTIDPRSETIIGHWGEFKNPHSMAVSVNGSALYVTEIGTNHQTNRV
WKYVLAASFLDH

BO13695.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:57:47
Subject Length Description Subject Range Query Range Score Percent Strand
Pal2-PE 406 CG5472-PE 1..406 1..406 2136 100 Plus
Pal2-PD 406 CG5472-PD 1..406 1..406 2136 100 Plus
Pal2-PA 406 CG5472-PA 1..406 1..406 2136 100 Plus
Pal1-PC 511 CG12130-PC 74..407 63..391 606 39.7 Plus
Pal1-PA 541 CG12130-PA 74..407 63..391 606 39.7 Plus