Clone Sequence Records
BO13695.3prime Sequence
785 bp (743 high quality bases) assembled on 2006-05-08
> BO13695.3prime
ATGGTCTAGAAAGCTTGCGGCCAGCACATACTTCCACACTCGGTTCGTCT
GGTGATTGGTTCCGATCTCGGTCACATACAGCGCCGATCCGTTGACACTG
ACCGCCATGGAGTGCGGATTCTTGAACTCGCCCCAGTGCCCGATGATCGT
CTCCGAGCGCGGATCGATGGTGAATCCCCGCACCGGCAGCATGGATGTGG
GTCCATTAACGGCGAACACTATGTCCCCGAAGCTGGCCACTCCGAAGACG
CGACCCAGGTCCGGTTCCTGGATGGTGGCCGCCGGTTCACCCTCACCGTG
GGAGGATATCAAGCCAGCTTTGGGACAGACCACCCTCATGTTCTCCCTGT
CGGCGATGCACAGTAGATCGAGGTGTTCCAGCAAGGTGATGGCGTGTGGC
ACCTGCAAAGAGAGGAATTCGGGTGGCTGGGGAATCGTTCGTAGCAGCTT
GCCAGCGGCATTGAACTTAAGTATGCGGCTGTTGCAGTAACCATCGGCGA
TGAAGAACTCTCCGGTGGTCGCCACTGCAATGGATGTGGGCTTGCACAGA
TGCTTGACGGATGATCCTGGCCTGAAGCGCTTGCCAATGGTCAGCAGAGG
CTTGTTGCTGAAGGGCTTGAACTTGAAAGCCTGGTGCATGGCCACATCCG
TGATCCAGTAATTCCCGTGCAAGTTCGATGGGCAGGCCATGCGGCATGTA
GAACATGTTCGATCCCCAACCCGACTTGATGGCGCCCGTCTTTGCGTCCA
GCACGTAAATGGTGTTTCTCCTTGATGGGCCCGTA
BO13695.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:09:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5472-PA | 1221 | Pal-RA | 563..1218 | 674..19 | 3255 | 99.8 | Minus |
CG5472-PB | 1215 | Pal-RB | 610..1212 | 621..19 | 2990 | 99.8 | Minus |
CG5472-PC | 1215 | Pal-RC | 610..1212 | 621..19 | 2990 | 99.8 | Minus |
CG5472-PA | 1221 | Pal-RA | 472..563 | 766..675 | 410 | 97.8 | Minus |
CG5472-PB | 1215 | Pal-RB | 472..563 | 766..675 | 410 | 97.8 | Minus |
CG5472-PC | 1215 | Pal-RC | 472..563 | 766..675 | 410 | 97.8 | Minus |
CG5472-PB | 1215 | Pal-RB | 563..615 | 674..622 | 265 | 100 | Minus |
CG5472-PC | 1215 | Pal-RC | 563..615 | 674..622 | 265 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 04:17:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pal2-RE | 2304 | CG5472-RE | 672..1436 | 785..19 | 3740 | 99.3 | Minus |
Pal2-RD | 1657 | CG5472-RD | 560..1324 | 785..19 | 3740 | 99.3 | Minus |
Pal2-RA | 1938 | CG5472-RA | 560..1324 | 785..19 | 3740 | 99.3 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 04:17:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 23689670..23689970 | 319..19 | 1505 | 100 | Minus |
2R | 25286936 | 2R | 23688970..23689131 | 785..622 | 690 | 97.6 | Minus |
2R | 25286936 | 2R | 23689191..23689306 | 623..508 | 580 | 100 | Minus |
2R | 25286936 | 2R | 23689513..23689613 | 420..320 | 505 | 100 | Minus |
2R | 25286936 | 2R | 23689367..23689456 | 509..420 | 435 | 98.9 | Minus |
Blast to na_te.dros performed on 2015-02-01 04:17:53 has no hits.
BO13695.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:10:30 Download gff for
BO13695.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pal-PA | 455..1221 | 16..784 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:59:06 Download gff for
BO13695.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5472-PA | 455..1221 | 16..784 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 15:03:50 Download gff for
BO13695.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pal2-RA | 673..1441 | 13..784 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 05:45:43 Download gff for
BO13695.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pal2-RA | 561..1329 | 13..784 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 05:45:43 Download gff for
BO13695.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 23688971..23689135 | 616..784 | 95 | -> | Minus |
2R | 23689199..23689306 | 508..615 | 100 | -> | Minus |
2R | 23689369..23689456 | 420..507 | 98 | -> | Minus |
2R | 23689514..23689613 | 320..419 | 100 | -> | Minus |
2R | 23689670..23689975 | 13..319 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 15:03:50 Download gff for
BO13695.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 19577037..19577136 | 320..419 | 100 | -> | Minus |
arm_2R | 19576494..19576658 | 616..784 | 95 | -> | Minus |
arm_2R | 19576722..19576829 | 508..615 | 100 | -> | Minus |
arm_2R | 19576892..19576979 | 420..507 | 98 | -> | Minus |
arm_2R | 19577193..19577498 | 13..319 | 99 | | Minus |
BO13695.5prime Sequence
826 bp (800 high quality bases) assembled on 2006-05-08
> BO13695.5prime
GAAGTTATCAGTCGACATGTCGCGTCTCCTGTTCGTGGCGCTGCTAGCCA
TAAGCTTGGGATATGTGGCGTCCAGCAGCAGCAACCACCTGCCAGCGGGC
TTGGCCATGGACCTGGGACCAGGTGTCAACCTCAACGAGCGCTTCTTCGA
CCAGGTGCGGGCGCTCATCAAGCGGAGGCTCCAGGAGAAGGGGCTCGCGA
AGCCGGAACAGCCAGAGCTGGCAATGCCACTGACCGACGATGATGCAGTG
GCCCTGCAGAACCAACGCAGCTACGACAACGTGCCACTTCCGGCGGCCAG
TGTGCCGACTCCCGTGCTCGTGGAGAACTGGCCCACCGAGCAGCACAGCT
TTGGCCAGGTCACCGCCGTGGCCGTGGATCCGCAGGGTAGTCCGGTGGTT
TTCCATCGCGCCGAGCGCTACTGGGATGTAAACACATTCAACGAGAGCAA
TATATACTACCTTATTGAGTACGGGCCCATCAAGGAGAACACCATCTACG
TGCTGGACGCAAAGACGGGCGCCATCAAGTCGGGTTGGGGATCGAACATG
TTCTACATGCCGCATGGCCTGACCATCGACTTGCACGGGAATTACTGGAT
CACGGATGTGGCCATGCACCAGGCTTTCAAGTTCAAGCCCTTCAGCAACA
AGCCTCTGCTGACCATTGGCAAGCGCTTCAGGCCAGGATCATCCGTCAAG
CATCTGTGCAAGCCCACATCCATTGCAGTGGCGACCACCGGAGAGTTCTT
CATCGCCGATGGTTACTGCAACAGCCGCATACTTAAGTTCAATGCCGCTG
GCAAGCTGCTACGAACGATTCCCCAG
BO13695.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:09:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5472-PA | 1221 | Pal-RA | 1..810 | 17..826 | 4025 | 99.8 | Plus |
CG5472-PB | 1215 | Pal-RB | 1..615 | 17..631 | 3075 | 100 | Plus |
CG5472-PC | 1215 | Pal-RC | 1..615 | 17..631 | 3075 | 100 | Plus |
CG5472-PB | 1215 | Pal-RB | 610..804 | 632..826 | 950 | 99.4 | Plus |
CG5472-PC | 1215 | Pal-RC | 610..804 | 632..826 | 950 | 99.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:59:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pal2-RE | 2304 | CG5472-RE | 219..1028 | 17..826 | 4035 | 99.9 | Plus |
Pal2-RD | 1657 | CG5472-RD | 107..916 | 17..826 | 4035 | 99.9 | Plus |
Pal2-RA | 1938 | CG5472-RA | 107..916 | 17..826 | 4035 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:58:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 23688295..23688710 | 17..432 | 2080 | 100 | Plus |
2R | 25286936 | 2R | 23688933..23689131 | 433..631 | 995 | 100 | Plus |
2R | 25286936 | 2R | 23689191..23689306 | 630..745 | 580 | 100 | Plus |
2R | 25286936 | 2R | 23689367..23689449 | 744..826 | 400 | 98.8 | Plus |
Blast to na_te.dros performed on 2015-02-13 01:58:59 has no hits.
BO13695.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:10:31 Download gff for
BO13695.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pal-PA | 1..810 | 17..826 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:59:07 Download gff for
BO13695.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5472-PA | 1..810 | 17..826 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 08:50:27 Download gff for
BO13695.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pal2-RA | 213..1028 | 9..826 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:37:53 Download gff for
BO13695.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pal2-RA | 101..916 | 9..826 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:37:53 Download gff for
BO13695.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 23688289..23688710 | 9..432 | 99 | -> | Plus |
2R | 23688933..23689135 | 433..637 | 98 | -> | Plus |
2R | 23689199..23689306 | 638..745 | 100 | -> | Plus |
2R | 23689369..23689449 | 746..826 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 08:50:27 Download gff for
BO13695.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 19575812..19576233 | 9..432 | 99 | -> | Plus |
arm_2R | 19576456..19576658 | 433..637 | 98 | -> | Plus |
arm_2R | 19576722..19576829 | 638..745 | 100 | -> | Plus |
arm_2R | 19576892..19576972 | 746..826 | 98 | | Plus |
BO13695.complete Sequence
1252 bp assembled on 2006-10-11
GenBank Submission: FJ632914
> BO13695.complete
GAAGTTATCAGTCGACATGTCGCGTCTCCTGTTCGTGGCGCTGCTAGCCA
TAAGCTTGGGATATGTGGCGTCCAGCAGCAGCAACCACCTGCCAGCGGGC
TTGGCCATGGACCTGGGACCAGGTGTCAACCTCAACGAGCGCTTCTTCGA
CCAGGTGCGGGCGCTCATCAAGCGGAGGCTCCAGGAGAAGGGGCTCGCGA
AGCCGGAACAGCCAGAGCTGGCAATGCCACTGACCGACGATGATGCAGTG
GCCCTGCAGAACCAACGCAGCTACGACAACGTGCCACTTCCGGCGGCCAG
TGTGCCGACTCCCGTGCTCGTGGAGAACTGGCCCACCGAGCAGCACAGCT
TTGGCCAGGTCACCGCCGTGGCCGTGGATCCGCAGGGTAGTCCGGTGGTT
TTCCATCGCGCCGAGCGCTACTGGGATGTAAACACATTCAACGAGAGCAA
TATATACTACCTTATTGAGTACGGGCCCATCAAGGAGAACACCATCTACG
TGCTGGACGCAAAGACGGGCGCCATCAAGTCGGGTTGGGGATCGAACATG
TTCTACATGCCGCATGGCCTGACCATCGACTTGCACGGGAATTACTGGAT
CACGGATGTGGCCATGCACCAGGCTTTCAAGTTCAAGCCCTTCAGCAACA
AGCCTCTGCTGACCATTGGCAAGCGCTTCAGGCCAGGATCATCCGTCAAG
CATCTGTGCAAGCCCACATCCATTGCAGTGGCGACCACCGGAGAGTTCTT
CATCGCCGATGGTTACTGCAACAGCCGCATACTTAAGTTCAATGCCGCTG
GCAAGCTGCTACGAACGATTCCCCAGCCACCCGAATTCCTCTCTTTGCAG
GTGCCACACGCCATCACCTTGCTGGAACACCTCGATCTACTGTGCATCGC
CGACAGGGAGAACATGAGGGTGGTCTGTCCCAAAGCTGGCTTGATATCCT
CCCACGGTGAGGGTGAACCGGCGGCCACCATCCAGGAACCGGACCTGGGT
CGCGTCTTCGGAGTGGCCAGCTTCGGGGACATAGTGTTCGCCGTTAATGG
ACCCACATCCATGCTGCCGGTGCGGGGATTCACCATCGATCCGCGCTCGG
AGACGATCATCGGGCACTGGGGCGAGTTCAAGAATCCGCACTCCATGGCG
GTCAGTGTCAACGGATCGGCGCTGTATGTGACCGAGATCGGAACCAATCA
CCAGACGAACCGAGTGTGGAAGTATGTGCTGGCCGCAAGCTTTCTAGACC
AT
BO13695.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:47:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pal2-RE | 1221 | CG5472-PE | 1..1218 | 17..1234 | 6075 | 99.9 | Plus |
Pal2-RD | 1221 | CG5472-PD | 1..1218 | 17..1234 | 6075 | 99.9 | Plus |
Pal2-RA | 1221 | CG5472-PA | 1..1218 | 17..1234 | 6075 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:47:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pal2-RE | 2304 | CG5472-RE | 219..1436 | 17..1234 | 6075 | 99.9 | Plus |
Pal2-RD | 1657 | CG5472-RD | 107..1324 | 17..1234 | 6075 | 99.9 | Plus |
Pal2-RA | 1938 | CG5472-RA | 107..1324 | 17..1234 | 6075 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:47:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 23688295..23688710 | 17..432 | 2080 | 100 | Plus |
2R | 25286936 | 2R | 23689670..23689970 | 934..1234 | 1505 | 100 | Plus |
2R | 25286936 | 2R | 23688933..23689131 | 433..631 | 995 | 100 | Plus |
2R | 25286936 | 2R | 23689191..23689306 | 630..745 | 580 | 100 | Plus |
2R | 25286936 | 2R | 23689513..23689613 | 833..933 | 505 | 100 | Plus |
2R | 25286936 | 2R | 23689367..23689456 | 744..833 | 435 | 98.9 | Plus |
Blast to na_te.dros performed on 2014-11-27 16:47:01 has no hits.
BO13695.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:44:49 Download gff for
BO13695.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pal-RA | 1..1221 | 17..1237 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:58:44 Download gff for
BO13695.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pal-RA | 132..1360 | 9..1240 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:59:13 Download gff for
BO13695.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pal2-RA | 219..1436 | 17..1236 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:44:50 Download gff for
BO13695.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pal-RA | 132..1360 | 9..1240 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:26:49 Download gff for
BO13695.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pal2-RA | 107..1324 | 17..1236 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:26:49 Download gff for
BO13695.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 23688933..23689135 | 433..637 | 98 | -> | Plus |
2R | 23689199..23689306 | 638..745 | 100 | -> | Plus |
2R | 23689369..23689456 | 746..833 | 98 | -> | Plus |
2R | 23689514..23689613 | 834..933 | 100 | -> | Plus |
2R | 23689670..23689970 | 934..1236 | 99 | | Plus |
2R | 23688295..23688710 | 17..432 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:59:13 Download gff for
BO13695.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 19575818..19576233 | 17..432 | 100 | -> | Plus |
arm_2R | 19576456..19576658 | 433..637 | 98 | -> | Plus |
arm_2R | 19576722..19576829 | 638..745 | 100 | -> | Plus |
arm_2R | 19576892..19576979 | 746..833 | 98 | -> | Plus |
arm_2R | 19577037..19577136 | 834..933 | 100 | -> | Plus |
arm_2R | 19577193..19577493 | 934..1236 | 99 | | Plus |
BO13695.pep Sequence
Translation from 16 to 1252
> BO13695.pep
MSRLLFVALLAISLGYVASSSSNHLPAGLAMDLGPGVNLNERFFDQVRAL
IKRRLQEKGLAKPEQPELAMPLTDDDAVALQNQRSYDNVPLPAASVPTPV
LVENWPTEQHSFGQVTAVAVDPQGSPVVFHRAERYWDVNTFNESNIYYLI
EYGPIKENTIYVLDAKTGAIKSGWGSNMFYMPHGLTIDLHGNYWITDVAM
HQAFKFKPFSNKPLLTIGKRFRPGSSVKHLCKPTSIAVATTGEFFIADGY
CNSRILKFNAAGKLLRTIPQPPEFLSLQVPHAITLLEHLDLLCIADRENM
RVVCPKAGLISSHGEGEPAATIQEPDLGRVFGVASFGDIVFAVNGPTSML
PVRGFTIDPRSETIIGHWGEFKNPHSMAVSVNGSALYVTEIGTNHQTNRV
WKYVLAASFLDH
BO13695.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:57:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pal2-PE | 406 | CG5472-PE | 1..406 | 1..406 | 2136 | 100 | Plus |
Pal2-PD | 406 | CG5472-PD | 1..406 | 1..406 | 2136 | 100 | Plus |
Pal2-PA | 406 | CG5472-PA | 1..406 | 1..406 | 2136 | 100 | Plus |
Pal1-PC | 511 | CG12130-PC | 74..407 | 63..391 | 606 | 39.7 | Plus |
Pal1-PA | 541 | CG12130-PA | 74..407 | 63..391 | 606 | 39.7 | Plus |