Clone BO13703 Report

Search the DGRC for BO13703

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:137
Well:3
Vector:pDNR-Dual
Associated Gene/TranscriptCG6870-RA
Protein status:BO13703.pep: validated full length
Sequenced Size:445

Clone Sequence Records

BO13703.5prime Sequence

443 bp (442 high quality bases) assembled on 2006-05-08

> BO13703.5prime
GAAGTTATCAGTCGACATGTCATCCGCGTTGACGAACCTCTTGCAATCGC
TGAGAATTGTGCCCTTGGGACATGGAAAGTCCAGTAATCAGGTGGTCGTT
GTACCAAGCAAAAAGGAACGTTTAAAACTGGAAGATCTGCCGGAGATCGC
ATTGGAGGAGGTGGCCCAGCACGACAGCTTCGACGATTGCTGGGTGGTAA
TCTACGATAGGGTCTACGATGTGACACACTTTCTAAGGGATCATCCCGGC
GGCGACGACGTCATTATGGATCACGCAGGGCGAGATGCCACCATCGCCTT
CCATGGCACAGGACACTCGGGGGATGCCATCGAAATGATGAAGGATTTCT
TGATCGGTCAACTGCCCACCAAGCAGCACATTTTTCGCACTGGCAAAAAC
AAGGTTTTGTCCCTGGGCATACCGGAAGCAAGCTTTCTAGACC

BO13703.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:09:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG6870-PA 414 CG6870-RA 1..411 17..427 2055 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:03:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG6870-RB 985 CG6870-RB 187..599 15..427 2065 100 Plus
CG6870-RA 852 CG6870-RA 187..599 15..427 2065 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:03:09
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 17591701..17592113 427..15 2065 100 Minus
Blast to na_te.dros performed on 2015-02-12 19:03:11 has no hits.

BO13703.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:10:36 Download gff for BO13703.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6870-PA 1..414 17..431 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:59:14 Download gff for BO13703.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6870-PA 1..414 17..431 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:14:29 Download gff for BO13703.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6870-RA 187..602 15..431 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:51:33 Download gff for BO13703.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6870-RA 187..602 15..431 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:51:33 Download gff for BO13703.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 17591698..17592113 15..431 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:14:29 Download gff for BO13703.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 17591698..17592113 15..431 99   Minus

BO13703.3prime Sequence

443 bp (442 high quality bases) assembled on 2006-05-08

> BO13703.3prime
ATGGTCTAGAAAGCTTGCTTCCGGTATGCCCAGGGACAAAACCTTGTTTT
TGCCAGTGCGAAAAATGTGCTGCTTGGTGGGCAGTTGACCGATCAAGAAA
TCCTTCATCATTTCGATGGCATCCCCCGAGTGTCCTGTGCCATGGAAGGC
GATGGTGGCATCTCGCCCTGCGTGATCCATAATGACGTCGTCGCCGCCGG
GATGATCCCTTAGAAAGTGTGTCACATCGTAGACCCTATCGTAGATTACC
ACCCAGCAATCGTCGAAGCTGTCGTGCTGGGCCACCTCCTCCAATGCGAT
CTCCGGCAGATCTTCCAGTTTTAAACGTTCCTTTTTGCTTGGTACAACGA
CCACCTGATTACTGGACTTTCCATGTCCCAAGGGCACAATTCTCAGCGAT
TGCAAGAGGTTCGTCAACGCGGATGACATGTCGACTGATAACT

BO13703.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:09:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG6870-PA 414 CG6870-RA 1..411 429..19 2055 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:41:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG6870-RB 985 CG6870-RB 187..599 431..19 2065 100 Minus
CG6870-RA 852 CG6870-RA 187..599 431..19 2065 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:41:46
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 17591701..17592113 19..431 2065 100 Plus
Blast to na_te.dros performed on 2015-02-10 22:41:50 has no hits.

BO13703.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:10:35 Download gff for BO13703.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6870-PA 1..414 15..429 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:59:13 Download gff for BO13703.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6870-PA 1..414 15..429 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 08:01:11 Download gff for BO13703.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6870-RA 187..602 15..431 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:10:48 Download gff for BO13703.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6870-RA 187..602 15..431 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:10:48 Download gff for BO13703.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 17591698..17592113 15..431 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 08:01:11 Download gff for BO13703.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 17591698..17592113 15..431 99   Plus

BO13703.complete Sequence

445 bp assembled on 2006-10-11

GenBank Submission: FJ632915

> BO13703.complete
GAAGTTATCAGTCGACATGTCATCCGCGTTGACGAACCTCTTGCAATCGC
TGAGAATTGTGCCCTTGGGACATGGAAAGTCCAGTAATCAGGTGGTCGTT
GTACCAAGCAAAAAGGAACGTTTAAAACTGGAAGATCTGCCGGAGATCGC
ATTGGAGGAGGTGGCCCAGCACGACAGCTTCGACGATTGCTGGGTGGTAA
TCTACGATAGGGTCTACGATGTGACACACTTTCTAAGGGATCATCCCGGC
GGCGACGACGTCATTATGGATCACGCAGGGCGAGATGCCACCATCGCCTT
CCATGGCACAGGACACTCGGGGGATGCCATCGAAATGATGAAGGATTTCT
TGATCGGTCAACTGCCCACCAAGCAGCACATTTTTCGCACTGGCAAAAAC
AAGGTTTTGTCCCTGGGCATACCGGAAGCAAGCTTTCTAGACCAT

BO13703.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:54:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG6870-RB 414 CG6870-PB 1..411 17..427 2055 100 Plus
CG6870-RA 414 CG6870-PA 1..411 17..427 2055 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:54:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG6870-RB 985 CG6870-RB 187..599 15..427 2065 100 Plus
CG6870-RA 852 CG6870-RA 187..599 15..427 2065 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:54:19
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 17591701..17592113 427..15 2065 100 Minus
Blast to na_te.dros performed on 2014-11-28 00:54:21 has no hits.

BO13703.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:16:51 Download gff for BO13703.complete
Subject Subject Range Query Range Percent Splice Strand
CG6870-RA 1..414 17..431 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:35:24 Download gff for BO13703.complete
Subject Subject Range Query Range Percent Splice Strand
CG6870-RA 186..601 15..431 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:02:06 Download gff for BO13703.complete
Subject Subject Range Query Range Percent Splice Strand
CG6870-RA 189..599 17..429 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:16:51 Download gff for BO13703.complete
Subject Subject Range Query Range Percent Splice Strand
CG6870-RA 186..601 15..431 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:28:45 Download gff for BO13703.complete
Subject Subject Range Query Range Percent Splice Strand
CG6870-RA 189..599 17..429 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:28:45 Download gff for BO13703.complete
Subject Subject Range Query Range Percent Splice Strand
2L 17591699..17592111 17..429 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:02:06 Download gff for BO13703.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 17591699..17592111 17..429 99   Minus

BO13703.pep Sequence

Translation from 16 to 445

> BO13703.pep
MSSALTNLLQSLRIVPLGHGKSSNQVVVVPSKKERLKLEDLPEIALEEVA
QHDSFDDCWVVIYDRVYDVTHFLRDHPGGDDVIMDHAGRDATIAFHGTGH
SGDAIEMMKDFLIGQLPTKQHIFRTGKNKVLSLGIPEASFLDH

BO13703.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:21:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG6870-PB 137 CG6870-PB 1..137 1..137 716 100 Plus
CG6870-PA 137 CG6870-PA 1..137 1..137 716 100 Plus
CG3566-PC 89 CG3566-PC 4..77 43..116 205 52.7 Plus
CG3566-PD 106 CG3566-PD 4..77 43..116 205 52.7 Plus
CG3566-PB 117 CG3566-PB 4..77 43..116 205 52.7 Plus