Clone Sequence Records
BO13703.5prime Sequence
443 bp (442 high quality bases) assembled on 2006-05-08
> BO13703.5prime
GAAGTTATCAGTCGACATGTCATCCGCGTTGACGAACCTCTTGCAATCGC
TGAGAATTGTGCCCTTGGGACATGGAAAGTCCAGTAATCAGGTGGTCGTT
GTACCAAGCAAAAAGGAACGTTTAAAACTGGAAGATCTGCCGGAGATCGC
ATTGGAGGAGGTGGCCCAGCACGACAGCTTCGACGATTGCTGGGTGGTAA
TCTACGATAGGGTCTACGATGTGACACACTTTCTAAGGGATCATCCCGGC
GGCGACGACGTCATTATGGATCACGCAGGGCGAGATGCCACCATCGCCTT
CCATGGCACAGGACACTCGGGGGATGCCATCGAAATGATGAAGGATTTCT
TGATCGGTCAACTGCCCACCAAGCAGCACATTTTTCGCACTGGCAAAAAC
AAGGTTTTGTCCCTGGGCATACCGGAAGCAAGCTTTCTAGACC
BO13703.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:09:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6870-PA | 414 | CG6870-RA | 1..411 | 17..427 | 2055 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:03:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6870-RB | 985 | CG6870-RB | 187..599 | 15..427 | 2065 | 100 | Plus |
CG6870-RA | 852 | CG6870-RA | 187..599 | 15..427 | 2065 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:03:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 17591701..17592113 | 427..15 | 2065 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 19:03:11 has no hits.
BO13703.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:10:36 Download gff for
BO13703.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6870-PA | 1..414 | 17..431 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:59:14 Download gff for
BO13703.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6870-PA | 1..414 | 17..431 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:14:29 Download gff for
BO13703.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6870-RA | 187..602 | 15..431 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:51:33 Download gff for
BO13703.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6870-RA | 187..602 | 15..431 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:51:33 Download gff for
BO13703.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 17591698..17592113 | 15..431 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:14:29 Download gff for
BO13703.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 17591698..17592113 | 15..431 | 99 | | Minus |
BO13703.3prime Sequence
443 bp (442 high quality bases) assembled on 2006-05-08
> BO13703.3prime
ATGGTCTAGAAAGCTTGCTTCCGGTATGCCCAGGGACAAAACCTTGTTTT
TGCCAGTGCGAAAAATGTGCTGCTTGGTGGGCAGTTGACCGATCAAGAAA
TCCTTCATCATTTCGATGGCATCCCCCGAGTGTCCTGTGCCATGGAAGGC
GATGGTGGCATCTCGCCCTGCGTGATCCATAATGACGTCGTCGCCGCCGG
GATGATCCCTTAGAAAGTGTGTCACATCGTAGACCCTATCGTAGATTACC
ACCCAGCAATCGTCGAAGCTGTCGTGCTGGGCCACCTCCTCCAATGCGAT
CTCCGGCAGATCTTCCAGTTTTAAACGTTCCTTTTTGCTTGGTACAACGA
CCACCTGATTACTGGACTTTCCATGTCCCAAGGGCACAATTCTCAGCGAT
TGCAAGAGGTTCGTCAACGCGGATGACATGTCGACTGATAACT
BO13703.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:09:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6870-PA | 414 | CG6870-RA | 1..411 | 429..19 | 2055 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:41:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6870-RB | 985 | CG6870-RB | 187..599 | 431..19 | 2065 | 100 | Minus |
CG6870-RA | 852 | CG6870-RA | 187..599 | 431..19 | 2065 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:41:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 17591701..17592113 | 19..431 | 2065 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 22:41:50 has no hits.
BO13703.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:10:35 Download gff for
BO13703.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6870-PA | 1..414 | 15..429 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:59:13 Download gff for
BO13703.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6870-PA | 1..414 | 15..429 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 08:01:11 Download gff for
BO13703.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6870-RA | 187..602 | 15..431 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:10:48 Download gff for
BO13703.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6870-RA | 187..602 | 15..431 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:10:48 Download gff for
BO13703.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 17591698..17592113 | 15..431 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 08:01:11 Download gff for
BO13703.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 17591698..17592113 | 15..431 | 99 | | Plus |
BO13703.complete Sequence
445 bp assembled on 2006-10-11
GenBank Submission: FJ632915
> BO13703.complete
GAAGTTATCAGTCGACATGTCATCCGCGTTGACGAACCTCTTGCAATCGC
TGAGAATTGTGCCCTTGGGACATGGAAAGTCCAGTAATCAGGTGGTCGTT
GTACCAAGCAAAAAGGAACGTTTAAAACTGGAAGATCTGCCGGAGATCGC
ATTGGAGGAGGTGGCCCAGCACGACAGCTTCGACGATTGCTGGGTGGTAA
TCTACGATAGGGTCTACGATGTGACACACTTTCTAAGGGATCATCCCGGC
GGCGACGACGTCATTATGGATCACGCAGGGCGAGATGCCACCATCGCCTT
CCATGGCACAGGACACTCGGGGGATGCCATCGAAATGATGAAGGATTTCT
TGATCGGTCAACTGCCCACCAAGCAGCACATTTTTCGCACTGGCAAAAAC
AAGGTTTTGTCCCTGGGCATACCGGAAGCAAGCTTTCTAGACCAT
BO13703.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:54:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6870-RB | 414 | CG6870-PB | 1..411 | 17..427 | 2055 | 100 | Plus |
CG6870-RA | 414 | CG6870-PA | 1..411 | 17..427 | 2055 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:54:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6870-RB | 985 | CG6870-RB | 187..599 | 15..427 | 2065 | 100 | Plus |
CG6870-RA | 852 | CG6870-RA | 187..599 | 15..427 | 2065 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:54:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 17591701..17592113 | 427..15 | 2065 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:54:21 has no hits.
BO13703.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:16:51 Download gff for
BO13703.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6870-RA | 1..414 | 17..431 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:35:24 Download gff for
BO13703.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6870-RA | 186..601 | 15..431 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:02:06 Download gff for
BO13703.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6870-RA | 189..599 | 17..429 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:16:51 Download gff for
BO13703.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6870-RA | 186..601 | 15..431 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:28:45 Download gff for
BO13703.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6870-RA | 189..599 | 17..429 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:28:45 Download gff for
BO13703.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 17591699..17592111 | 17..429 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:02:06 Download gff for
BO13703.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 17591699..17592111 | 17..429 | 99 | | Minus |
BO13703.pep Sequence
Translation from 16 to 445
> BO13703.pep
MSSALTNLLQSLRIVPLGHGKSSNQVVVVPSKKERLKLEDLPEIALEEVA
QHDSFDDCWVVIYDRVYDVTHFLRDHPGGDDVIMDHAGRDATIAFHGTGH
SGDAIEMMKDFLIGQLPTKQHIFRTGKNKVLSLGIPEASFLDH
BO13703.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:21:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6870-PB | 137 | CG6870-PB | 1..137 | 1..137 | 716 | 100 | Plus |
CG6870-PA | 137 | CG6870-PA | 1..137 | 1..137 | 716 | 100 | Plus |
CG3566-PC | 89 | CG3566-PC | 4..77 | 43..116 | 205 | 52.7 | Plus |
CG3566-PD | 106 | CG3566-PD | 4..77 | 43..116 | 205 | 52.7 | Plus |
CG3566-PB | 117 | CG3566-PB | 4..77 | 43..116 | 205 | 52.7 | Plus |