Clone Sequence Records
BO13709.complete Sequence
688 bp assembled on 2010-07-02
GenBank Submission: KX799061
> BO13709.complete
GAAGTTATCAGTCGACATGGACTGCCGCACATCGTTCCTGAAAGCCGTTC
TTATCGTTCTCAATGTGCTGCTATCGCTGATTGGAGTGACGTTGATTGCT
CTGTCCGTGTACGAGCTGAACAGCTCCACGCCGGGCACCTTCGAGCACAT
CGCCATCGTTGTCCAGATCTTCGTGGGCACCTTCGTGGTCCTGACCTCGT
TTCTGGGCTGCTTTGCCACCGCTCGGGTTTCCCTGGGACTGGTTTGGAGC
TATGTGATCTGCCTGCTGATCCTGCTGTGCCTGCAGATTTATATTATCGC
GGCAGCCCACTCCACGGACTACGTGGAGCGATCCAAGAAGGATTTCCTGG
CCACCTGGGCTGATCAAAGGACCAATGTGGAGCGCATATCGCTCCTTGAG
CAAAAGTACTCCTGCTGCGGCCAGTTGGGCGCCCATGACTACATCCTGAT
GGGACGGGGTATACCCTTGAGCTGCTACAAGGATCAGGAGCGGCGCGAGT
ACAGCCTCTTCTCCGGGGGCTGCCTGCAGGCCGTGCAGGCGCATGCCACG
GACAACGTGGCCATCGGACTCATCATCAAGTGGCTGCTGCTTCTGGTGGA
GTTCGCCGCCCTGGGAGCCGCAACCCACTTGGGCATCACGGTGCGCAATA
AATTGCGGCGCGAAAGATTCGCAAGCTTTCTAGACCAT
BO13709.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:22:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tsp42En-RB | 657 | CG12839-PB | 1..654 | 17..670 | 3270 | 100 | Plus |
Tsp42En-RA | 657 | CG12839-PA | 1..654 | 17..670 | 3270 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:22:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tsp42En-RB | 1326 | CG12839-RB | 188..843 | 15..670 | 3280 | 100 | Plus |
Tsp42En-RA | 970 | CG12839-RA | 188..843 | 15..670 | 3280 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:22:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 7053525..7053721 | 405..601 | 985 | 100 | Plus |
2R | 25286936 | 2R | 7053062..7053236 | 76..250 | 875 | 100 | Plus |
2R | 25286936 | 2R | 7053301..7053456 | 251..406 | 780 | 100 | Plus |
2R | 25286936 | 2R | 7053846..7053916 | 600..670 | 355 | 100 | Plus |
2R | 25286936 | 2R | 7052934..7052995 | 15..76 | 310 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 02:22:21 has no hits.
BO13709.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-02 13:25:04 Download gff for
BO13709.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tsp42En-RA | 163..816 | 17..672 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:17:45 Download gff for
BO13709.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tsp42En-RA | 190..843 | 17..672 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:27:50 Download gff for
BO13709.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tsp42En-RA | 190..843 | 17..672 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:27:50 Download gff for
BO13709.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 7052936..7052995 | 17..76 | 100 | -> | Plus |
2R | 7053063..7053236 | 77..250 | 100 | -> | Plus |
2R | 7053301..7053456 | 251..406 | 100 | -> | Plus |
2R | 7053527..7053721 | 407..601 | 100 | -> | Plus |
2R | 7053848..7053916 | 602..672 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:17:45 Download gff for
BO13709.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 2940441..2940500 | 17..76 | 100 | -> | Plus |
arm_2R | 2940568..2940741 | 77..250 | 100 | -> | Plus |
arm_2R | 2940806..2940961 | 251..406 | 100 | -> | Plus |
arm_2R | 2941032..2941226 | 407..601 | 100 | -> | Plus |
arm_2R | 2941353..2941421 | 602..672 | 97 | | Plus |
BO13709.5prime Sequence
613 bp (517 high quality bases) assembled on 2010-02-20
> BO13709.5prime
GCTGATTGGAGTGACGTTGATTGCTCTGTCCGTGTACGAGCTGAACAGCT
CCACGCCGGGCACCTTCGAGCACATCGCCATCGTTGTCCAGATCTTCGTG
GGCACCTTCGTGGTCCTGACCTCGTTTCTGGGCTGCTTTGCCACCGCTCG
GGTTTCCCTGGGACTGGTTTGGAGCTATGTGATCTGCCTGCTGATCCTGC
TGTGCCTGCAGATTTATATTATCGCGGCAGCCCACTCCACGGACTACGTG
GAGCGATCCAAGAAGGATTTCCTGGCCACCTGGGCTGATCAAAGGACCAA
TGTGGAGCGCATATCGCTCCTTGAGCAAAAGTACTCCTGCTGCGGCCAGT
TGGGCGCCCATGACTACATCCTGATGGGACGGGGTATACCCTTGAGCTGC
TACAAGGATCAGGAGCGGCGCGAGTACAGCCTCTTCTCCGGGGGCTGCCT
GCAGGCCGTGCAGGCGCATGCCACGGACAACGTGGCCATCGGACTCATCA
TCCAGTGGCTGCTGCTTCTGGAGGAGTTCGCCGCCCTTGGAACCGCAACC
CACTTGGGCATCACGGTGGGCAATAAATTGGCGGCGCGAAGAATCCCCAG
CTTTTTAGAACAT
BO13709.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:12:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tsp42En-RB | 1326 | CG12839-RB | 249..837 | 1..590 | 2850 | 99 | Plus |
Tsp42En-RA | 970 | CG12839-RA | 249..837 | 1..590 | 2850 | 99 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 08:12:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 7053525..7053721 | 330..526 | 955 | 99 | Plus |
2R | 25286936 | 2R | 7053062..7053236 | 1..175 | 875 | 100 | Plus |
2R | 25286936 | 2R | 7053301..7053456 | 176..331 | 780 | 100 | Plus |
2R | 25286936 | 2R | 7053846..7053901 | 525..580 | 235 | 94.6 | Plus |
Blast to na_te.dros performed on 2015-02-13 08:12:45 has no hits.
BO13709.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-21 04:02:12 Download gff for
BO13709.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tsp42En-RA | 222..816 | 1..595 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 03:30:10 Download gff for
BO13709.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tsp42En-RA | 249..843 | 1..595 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:14:37 Download gff for
BO13709.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tsp42En-RA | 249..843 | 1..595 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:14:37 Download gff for
BO13709.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 7053062..7053236 | 1..175 | 100 | -> | Plus |
2R | 7053301..7053456 | 176..331 | 100 | -> | Plus |
2R | 7053527..7053721 | 332..526 | 98 | -> | Plus |
2R | 7053848..7053916 | 527..595 | 91 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 03:30:10 Download gff for
BO13709.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 2940567..2940741 | 1..175 | 100 | -> | Plus |
arm_2R | 2940806..2940961 | 176..331 | 100 | -> | Plus |
arm_2R | 2941032..2941226 | 332..526 | 98 | -> | Plus |
arm_2R | 2941353..2941421 | 527..595 | 91 | | Plus |
BO13709.3prime Sequence
640 bp (492 high quality bases) assembled on 2010-02-20
> BO13709.3prime
CTTTCGCGCCGCAATTTATTGCGCACCGTGATGCCCAAGTGGGTTGCGGC
TCCCAGGGCGGCGAACTCCACCAGAAGCAGCAGCCACTTGATGATGAGTC
CGATGGCCACGTTGTCCGTGGCATGCGCCTGCACGGCCTGCAGGCAGCCC
CCGGAGAAGAGGCTGTACTCGCGCCGCTCCTGATCCTTGTAGCAGCTCAA
GGGTATACCCCGTCCCATCAGGATGTAGTCATGGGCGCCCAACTGGCCGC
AGCAGGAGTACTTTTGCTCAAGGAGCGATATGCGCTCCACATTGGTCCTT
TGATCAGCCCAGGTGGCCAGGAAATCCTTCTTGGATCGCTCCACGTAGTC
CGTGGAGTGGGCTGCCGCGATAATATAAATCTGCAGGCACAGCAGGATCA
GCAGGCAGATCACATAGCTCCAAACCAGTCCCAGGGAAACCCGAGCGGTG
GCAAAGCAGCCCAGAAACGAGGTCAGGACCACGAAGGTGCCCACGAAGAT
CTGGACAACGATGGCGATGTGGCTCGAAGGGGCCCCGGCGTGGAGCTGTT
CACCTTCGTACACGGACAGAGCAATCAACGTCACTTCCAATCAGCCATTA
GCAGCCCATTGAGAACGAATAAAAACGGCTTTCAGGAACG
BO13709.3prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:52:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tsp42En-RB | 1326 | CG12839-RB | 206..839 | 640..1 | 2975 | 98.3 | Minus |
Tsp42En-RA | 970 | CG12839-RA | 206..839 | 640..1 | 2975 | 98.3 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 19:52:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 7053525..7053721 | 262..66 | 985 | 100 | Minus |
2R | 25286936 | 2R | 7053301..7053456 | 416..261 | 780 | 100 | Minus |
2R | 25286936 | 2R | 7053071..7053236 | 585..417 | 665 | 97 | Minus |
2R | 25286936 | 2R | 7053846..7053912 | 67..1 | 335 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-02 19:52:56 has no hits.
BO13709.3prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-21 04:02:11 Download gff for
BO13709.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tsp42En-RA | 179..812 | 1..640 | 98 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 18:21:38 Download gff for
BO13709.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tsp42En-RA | 206..839 | 1..640 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 21:02:25 Download gff for
BO13709.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tsp42En-RA | 206..839 | 1..640 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 21:02:25 Download gff for
BO13709.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 7053301..7053456 | 261..416 | 100 | -> | Minus |
2R | 7053063..7053236 | 417..594 | 96 | -> | Minus |
2R | 7053527..7053721 | 66..260 | 100 | -> | Minus |
2R | 7053848..7053912 | 1..65 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 18:21:38 Download gff for
BO13709.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 2940568..2940741 | 417..594 | 96 | -> | Minus |
arm_2R | 2940806..2940961 | 261..416 | 100 | -> | Minus |
arm_2R | 2941032..2941226 | 66..260 | 100 | -> | Minus |
arm_2R | 2941353..2941417 | 1..65 | 100 | | Minus |
BO13709.pep Sequence
Translation from 16 to 688
> BO13709.pep
MDCRTSFLKAVLIVLNVLLSLIGVTLIALSVYELNSSTPGTFEHIAIVVQ
IFVGTFVVLTSFLGCFATARVSLGLVWSYVICLLILLCLQIYIIAAAHST
DYVERSKKDFLATWADQRTNVERISLLEQKYSCCGQLGAHDYILMGRGIP
LSCYKDQERREYSLFSGGCLQAVQAHATDNVAIGLIIKWLLLLVEFAALG
AATHLGITVRNKLRRERFASFLDH
BO13709.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:35:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tsp42En-PB | 218 | CG12839-PB | 1..218 | 1..218 | 1106 | 100 | Plus |
Tsp42En-PA | 218 | CG12839-PA | 1..218 | 1..218 | 1106 | 100 | Plus |
lbm-PB | 208 | CG2374-PB | 1..208 | 1..218 | 243 | 31.7 | Plus |
lbm-PA | 208 | CG2374-PA | 1..208 | 1..218 | 243 | 31.7 | Plus |
Tsp42Er-PA | 211 | CG12837-PA | 8..211 | 8..218 | 227 | 25.7 | Plus |