Clone BO13709 Report

Search the DGRC for BO13709

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:137
Well:9
Vector:pDNR-Dual
Associated Gene/TranscriptTsp42En-RA
Protein status:BO13709.pep: Imported from assembly
Sequenced Size:688

Clone Sequence Records

BO13709.complete Sequence

688 bp assembled on 2010-07-02

GenBank Submission: KX799061

> BO13709.complete
GAAGTTATCAGTCGACATGGACTGCCGCACATCGTTCCTGAAAGCCGTTC
TTATCGTTCTCAATGTGCTGCTATCGCTGATTGGAGTGACGTTGATTGCT
CTGTCCGTGTACGAGCTGAACAGCTCCACGCCGGGCACCTTCGAGCACAT
CGCCATCGTTGTCCAGATCTTCGTGGGCACCTTCGTGGTCCTGACCTCGT
TTCTGGGCTGCTTTGCCACCGCTCGGGTTTCCCTGGGACTGGTTTGGAGC
TATGTGATCTGCCTGCTGATCCTGCTGTGCCTGCAGATTTATATTATCGC
GGCAGCCCACTCCACGGACTACGTGGAGCGATCCAAGAAGGATTTCCTGG
CCACCTGGGCTGATCAAAGGACCAATGTGGAGCGCATATCGCTCCTTGAG
CAAAAGTACTCCTGCTGCGGCCAGTTGGGCGCCCATGACTACATCCTGAT
GGGACGGGGTATACCCTTGAGCTGCTACAAGGATCAGGAGCGGCGCGAGT
ACAGCCTCTTCTCCGGGGGCTGCCTGCAGGCCGTGCAGGCGCATGCCACG
GACAACGTGGCCATCGGACTCATCATCAAGTGGCTGCTGCTTCTGGTGGA
GTTCGCCGCCCTGGGAGCCGCAACCCACTTGGGCATCACGGTGCGCAATA
AATTGCGGCGCGAAAGATTCGCAAGCTTTCTAGACCAT

BO13709.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:22:23
Subject Length Description Subject Range Query Range Score Percent Strand
Tsp42En-RB 657 CG12839-PB 1..654 17..670 3270 100 Plus
Tsp42En-RA 657 CG12839-PA 1..654 17..670 3270 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:22:24
Subject Length Description Subject Range Query Range Score Percent Strand
Tsp42En-RB 1326 CG12839-RB 188..843 15..670 3280 100 Plus
Tsp42En-RA 970 CG12839-RA 188..843 15..670 3280 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:22:20
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7053525..7053721 405..601 985 100 Plus
2R 25286936 2R 7053062..7053236 76..250 875 100 Plus
2R 25286936 2R 7053301..7053456 251..406 780 100 Plus
2R 25286936 2R 7053846..7053916 600..670 355 100 Plus
2R 25286936 2R 7052934..7052995 15..76 310 100 Plus
Blast to na_te.dros performed on 2014-11-28 02:22:21 has no hits.

BO13709.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-02 13:25:04 Download gff for BO13709.complete
Subject Subject Range Query Range Percent Splice Strand
Tsp42En-RA 163..816 17..672 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:17:45 Download gff for BO13709.complete
Subject Subject Range Query Range Percent Splice Strand
Tsp42En-RA 190..843 17..672 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:27:50 Download gff for BO13709.complete
Subject Subject Range Query Range Percent Splice Strand
Tsp42En-RA 190..843 17..672 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:27:50 Download gff for BO13709.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7052936..7052995 17..76 100 -> Plus
2R 7053063..7053236 77..250 100 -> Plus
2R 7053301..7053456 251..406 100 -> Plus
2R 7053527..7053721 407..601 100 -> Plus
2R 7053848..7053916 602..672 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:17:45 Download gff for BO13709.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 2940441..2940500 17..76 100 -> Plus
arm_2R 2940568..2940741 77..250 100 -> Plus
arm_2R 2940806..2940961 251..406 100 -> Plus
arm_2R 2941032..2941226 407..601 100 -> Plus
arm_2R 2941353..2941421 602..672 97   Plus

BO13709.5prime Sequence

613 bp (517 high quality bases) assembled on 2010-02-20

> BO13709.5prime
GCTGATTGGAGTGACGTTGATTGCTCTGTCCGTGTACGAGCTGAACAGCT
CCACGCCGGGCACCTTCGAGCACATCGCCATCGTTGTCCAGATCTTCGTG
GGCACCTTCGTGGTCCTGACCTCGTTTCTGGGCTGCTTTGCCACCGCTCG
GGTTTCCCTGGGACTGGTTTGGAGCTATGTGATCTGCCTGCTGATCCTGC
TGTGCCTGCAGATTTATATTATCGCGGCAGCCCACTCCACGGACTACGTG
GAGCGATCCAAGAAGGATTTCCTGGCCACCTGGGCTGATCAAAGGACCAA
TGTGGAGCGCATATCGCTCCTTGAGCAAAAGTACTCCTGCTGCGGCCAGT
TGGGCGCCCATGACTACATCCTGATGGGACGGGGTATACCCTTGAGCTGC
TACAAGGATCAGGAGCGGCGCGAGTACAGCCTCTTCTCCGGGGGCTGCCT
GCAGGCCGTGCAGGCGCATGCCACGGACAACGTGGCCATCGGACTCATCA
TCCAGTGGCTGCTGCTTCTGGAGGAGTTCGCCGCCCTTGGAACCGCAACC
CACTTGGGCATCACGGTGGGCAATAAATTGGCGGCGCGAAGAATCCCCAG
CTTTTTAGAACAT

BO13709.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:12:48
Subject Length Description Subject Range Query Range Score Percent Strand
Tsp42En-RB 1326 CG12839-RB 249..837 1..590 2850 99 Plus
Tsp42En-RA 970 CG12839-RA 249..837 1..590 2850 99 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 08:12:41
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7053525..7053721 330..526 955 99 Plus
2R 25286936 2R 7053062..7053236 1..175 875 100 Plus
2R 25286936 2R 7053301..7053456 176..331 780 100 Plus
2R 25286936 2R 7053846..7053901 525..580 235 94.6 Plus
Blast to na_te.dros performed on 2015-02-13 08:12:45 has no hits.

BO13709.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-21 04:02:12 Download gff for BO13709.5prime
Subject Subject Range Query Range Percent Splice Strand
Tsp42En-RA 222..816 1..595 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 03:30:10 Download gff for BO13709.5prime
Subject Subject Range Query Range Percent Splice Strand
Tsp42En-RA 249..843 1..595 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:14:37 Download gff for BO13709.5prime
Subject Subject Range Query Range Percent Splice Strand
Tsp42En-RA 249..843 1..595 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:14:37 Download gff for BO13709.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 7053062..7053236 1..175 100 -> Plus
2R 7053301..7053456 176..331 100 -> Plus
2R 7053527..7053721 332..526 98 -> Plus
2R 7053848..7053916 527..595 91   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 03:30:10 Download gff for BO13709.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 2940567..2940741 1..175 100 -> Plus
arm_2R 2940806..2940961 176..331 100 -> Plus
arm_2R 2941032..2941226 332..526 98 -> Plus
arm_2R 2941353..2941421 527..595 91   Plus

BO13709.3prime Sequence

640 bp (492 high quality bases) assembled on 2010-02-20

> BO13709.3prime
CTTTCGCGCCGCAATTTATTGCGCACCGTGATGCCCAAGTGGGTTGCGGC
TCCCAGGGCGGCGAACTCCACCAGAAGCAGCAGCCACTTGATGATGAGTC
CGATGGCCACGTTGTCCGTGGCATGCGCCTGCACGGCCTGCAGGCAGCCC
CCGGAGAAGAGGCTGTACTCGCGCCGCTCCTGATCCTTGTAGCAGCTCAA
GGGTATACCCCGTCCCATCAGGATGTAGTCATGGGCGCCCAACTGGCCGC
AGCAGGAGTACTTTTGCTCAAGGAGCGATATGCGCTCCACATTGGTCCTT
TGATCAGCCCAGGTGGCCAGGAAATCCTTCTTGGATCGCTCCACGTAGTC
CGTGGAGTGGGCTGCCGCGATAATATAAATCTGCAGGCACAGCAGGATCA
GCAGGCAGATCACATAGCTCCAAACCAGTCCCAGGGAAACCCGAGCGGTG
GCAAAGCAGCCCAGAAACGAGGTCAGGACCACGAAGGTGCCCACGAAGAT
CTGGACAACGATGGCGATGTGGCTCGAAGGGGCCCCGGCGTGGAGCTGTT
CACCTTCGTACACGGACAGAGCAATCAACGTCACTTCCAATCAGCCATTA
GCAGCCCATTGAGAACGAATAAAAACGGCTTTCAGGAACG

BO13709.3prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:52:59
Subject Length Description Subject Range Query Range Score Percent Strand
Tsp42En-RB 1326 CG12839-RB 206..839 640..1 2975 98.3 Minus
Tsp42En-RA 970 CG12839-RA 206..839 640..1 2975 98.3 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 19:52:53
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7053525..7053721 262..66 985 100 Minus
2R 25286936 2R 7053301..7053456 416..261 780 100 Minus
2R 25286936 2R 7053071..7053236 585..417 665 97 Minus
2R 25286936 2R 7053846..7053912 67..1 335 100 Minus
Blast to na_te.dros performed on 2015-02-02 19:52:56 has no hits.

BO13709.3prime Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-21 04:02:11 Download gff for BO13709.3prime
Subject Subject Range Query Range Percent Splice Strand
Tsp42En-RA 179..812 1..640 98   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 18:21:38 Download gff for BO13709.3prime
Subject Subject Range Query Range Percent Splice Strand
Tsp42En-RA 206..839 1..640 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 21:02:25 Download gff for BO13709.3prime
Subject Subject Range Query Range Percent Splice Strand
Tsp42En-RA 206..839 1..640 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 21:02:25 Download gff for BO13709.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 7053301..7053456 261..416 100 -> Minus
2R 7053063..7053236 417..594 96 -> Minus
2R 7053527..7053721 66..260 100 -> Minus
2R 7053848..7053912 1..65 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 18:21:38 Download gff for BO13709.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 2940568..2940741 417..594 96 -> Minus
arm_2R 2940806..2940961 261..416 100 -> Minus
arm_2R 2941032..2941226 66..260 100 -> Minus
arm_2R 2941353..2941417 1..65 100   Minus

BO13709.pep Sequence

Translation from 16 to 688

> BO13709.pep
MDCRTSFLKAVLIVLNVLLSLIGVTLIALSVYELNSSTPGTFEHIAIVVQ
IFVGTFVVLTSFLGCFATARVSLGLVWSYVICLLILLCLQIYIIAAAHST
DYVERSKKDFLATWADQRTNVERISLLEQKYSCCGQLGAHDYILMGRGIP
LSCYKDQERREYSLFSGGCLQAVQAHATDNVAIGLIIKWLLLLVEFAALG
AATHLGITVRNKLRRERFASFLDH

BO13709.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:35:20
Subject Length Description Subject Range Query Range Score Percent Strand
Tsp42En-PB 218 CG12839-PB 1..218 1..218 1106 100 Plus
Tsp42En-PA 218 CG12839-PA 1..218 1..218 1106 100 Plus
lbm-PB 208 CG2374-PB 1..208 1..218 243 31.7 Plus
lbm-PA 208 CG2374-PA 1..208 1..218 243 31.7 Plus
Tsp42Er-PA 211 CG12837-PA 8..211 8..218 227 25.7 Plus