Clone BO13711 Report

Search the DGRC for BO13711

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:137
Well:11
Vector:pDNR-Dual
Associated Gene/Transcript
Protein status:BO13711.pep: validated full length
Sequenced Size:655

Clone Sequence Records

BO13711.3prime Sequence

628 bp (617 high quality bases) assembled on 2006-05-08

> BO13711.3prime
ATGGTCTAGAAAGCTTGCGGTGGAGTTATCCAGAACAACCACCTGTGTGT
TTTGGTATCTTCGCCAGGCACTCTCCGCCCTTTCCAAGTATTCACCGATC
TCCTGTCGCTTGTTCAGAAGGTCGTACTTCTCTAGAGCCAACTTCAGGAG
TACGTACTCCAGGCTTCGAATGCCTCCGAGATTGTTTGGATCCCTTAGGT
TATCGACTAGGATTACGAATTTCTTGAGCAGCTCCACCAGCTGCCCAAAG
TTGCTCAAATCGTCCAGATTAGCATCCACCTCGTTGACGTATCGCATACT
CTGCTTAATCCTTCTGGCCAAATCGGTGCTCCTGCCAACCAGGGGTGAGA
GCTCCGTATTCAGCTGTTGCACCGATCTGCGCGTATCGGTCACCTTCAGC
AATGCGTCCTGATTATACTGATCCTGATCTGTCCACTGGGTCATCGGAGC
CTTAGTAGTCGCTCCTTCGTTGTCCACCATAGATATCCGATCGTTCTCCA
CAATAATGGTCTTGTCGATGGTGTCGGATGCATTCGGCGGCTGCTGTACG
TGAAAGTCCAAGGTGAAGTGAACCCGCATGCTACCCTGGACCAAAGTAAA
ATGCTGCTAGGAAAACCAAATAGTCTTA

BO13711.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:09:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG9837-PA 624 CG9837-RA 40..621 600..19 2885 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:00:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG9837-RF 2072 CG9837-RF 41..650 628..19 2990 99.5 Minus
CG9837-RE 802 CG9837-RE 41..650 628..19 2990 99.5 Minus
CG9837-RD 1488 CG9837-RD 568..1137 588..19 2835 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:59:58
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 8809101..8809669 19..587 2830 99.8 Plus
Blast to na_te.dros performed on 2015-02-12 18:00:01 has no hits.

BO13711.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:10:40 Download gff for BO13711.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9837-PA 13..624 16..627 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:59:20 Download gff for BO13711.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9837-PA 13..624 16..627 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 03:55:35 Download gff for BO13711.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9837-RE 42..650 19..627 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:09:30 Download gff for BO13711.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9837-RE 42..650 19..627 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:09:30 Download gff for BO13711.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 8809101..8809662 19..580 99 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 03:55:35 Download gff for BO13711.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 4634823..4635384 19..580 99 <- Plus

BO13711.5prime Sequence

653 bp (637 high quality bases) assembled on 2006-05-08

> BO13711.5prime
GAAGTTATCAGTCGACATGTGGTCCTCTAAGACTATTTTGGTTTTCCTAG
CAGCATTTACTTTGGTCCAGGGTAGCATGCGGTTTCACTTCACCTTGGAC
TTTCACGTACAGCAGCCGCCGAATGCATCCGACACCATCGACAAGACCAT
TATTGTGGAGAACGATCGGATATCTATGGTGGACAACGAAGGAGCGACTA
CTAAGGCTCCGATGACCCAGTGGACAGATCAGGATCAGTATAATCAGGAC
GCATTGCTGAAGGTGACCGATACGCGCAGATCGGTGCAACAGCTGAATAC
GGAGCTCTCACCCCTGGTTGGCAGGAGCACCGATTTGGCCAGAAGGATTA
AGCAGAGTATGCGATACGTCAACGAGGTGGATGCTAATCTGGACGATTTG
AGCAACTTTGGGCAGCTGGTGGAGCTGCTCAAGAAATTCGTAATCCTAGT
CGATAACCTAAGGGATCCAAACAATCTCGGAGGCATTCGAAGCCTGGAGT
ACGTACTCCTGAAGTTGGCTCTAGAGAAGTACGACCTTCTGAACAAGCGA
CAGGAGATCGGTGAATACTTGGAAAGGGCGGAGAGTGCCTGGCGAAGATA
CCAAAACACACAGGTGGTTGTTCTGGATAACTCCACCGCAAGCTTTCTAG
ACC

BO13711.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:09:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG9837-PA 624 CG9837-RA 1..621 17..637 3105 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:31:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG9837-RF 2072 CG9837-RF 30..650 17..637 3105 100 Plus
CG9837-RE 802 CG9837-RE 30..650 17..637 3105 100 Plus
CG9837-RD 1488 CG9837-RD 568..1137 68..637 2850 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:31:34
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 8809101..8809669 637..69 2845 100 Minus
3R 32079331 3R 8809728..8809782 71..17 275 100 Minus
Blast to na_te.dros performed on 2015-02-10 20:31:35 has no hits.

BO13711.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:10:41 Download gff for BO13711.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9837-PA 1..624 17..640 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:59:21 Download gff for BO13711.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9837-PA 1..624 17..640 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:40:46 Download gff for BO13711.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9837-RE 30..650 17..637 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:45:32 Download gff for BO13711.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9837-RE 30..650 17..637 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 22:45:32 Download gff for BO13711.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 8809101..8809662 76..637 100 <- Minus
3R 8809725..8809782 17..75 94   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:40:46 Download gff for BO13711.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 4634823..4635384 76..637 100 <- Minus
arm_3R 4635447..4635504 17..75 94   Minus

BO13711.complete Sequence

655 bp assembled on 2006-10-11

GenBank Submission: FJ632916

> BO13711.complete
GAAGTTATCAGTCGACATGTGGTCCTCTAAGACTATTTTGGTTTTCCTAG
CAGCATTTACTTTGGTCCAGGGTAGCATGCGGTTTCACTTCACCTTGGAC
TTTCACGTACAGCAGCCGCCGAATGCATCCGACACCATCGACAAGACCAT
TATTGTGGAGAACGATCGGATATCTATGGTGGACAACGAAGGAGCGACTA
CTAAGGCTCCGATGACCCAGTGGACAGATCAGGATCAGTATAATCAGGAC
GCATTGCTGAAGGTGACCGATACGCGCAGATCGGTGCAACAGCTGAATAC
GGAGCTCTCACCCCTGGTTGGCAGGAGCACCGATTTGGCCAGAAGGATTA
AGCAGAGTATGCGATACGTCAACGAGGTGGATGCTAATCTGGACGATTTG
AGCAACTTTGGGCAGCTGGTGGAGCTGCTCAAGAAATTCGTAATCCTAGT
CGATAACCTAAGGGATCCAAACAATCTCGGAGGCATTCGAAGCCTGGAGT
ACGTACTCCTGAAGTTGGCTCTAGAGAAGTACGACCTTCTGAACAAGCGA
CAGGAGATCGGTGAATACTTGGAAAGGGCGGAGAGTGCCTGGCGAAGATA
CCAAAACACACAGGTGGTTGTTCTGGATAACTCCACCGCAAGCTTTCTAG
ACCAT

BO13711.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:32:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG9837-RF 624 CG9837-PF 1..621 17..637 3105 100 Plus
CG9837-RE 624 CG9837-PE 1..621 17..637 3105 100 Plus
CG9837-RD 564 CG9837-PD 1..561 77..637 2805 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:32:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG9837-RF 2072 CG9837-RF 30..650 17..637 3105 100 Plus
CG9837-RE 802 CG9837-RE 30..650 17..637 3105 100 Plus
CG9837-RD 1488 CG9837-RD 568..1137 68..637 2850 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:32:11
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 8809101..8809669 637..69 2845 100 Minus
3R 32079331 3R 8809728..8809782 71..17 275 100 Minus
Blast to na_te.dros performed on 2014-11-27 14:32:12 has no hits.

BO13711.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:44:51 Download gff for BO13711.complete
Subject Subject Range Query Range Percent Splice Strand
CG9837-RA 1..624 17..640 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:58:47 Download gff for BO13711.complete
Subject Subject Range Query Range Percent Splice Strand
CG9837-RA 30..650 17..637 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:45:49 Download gff for BO13711.complete
Subject Subject Range Query Range Percent Splice Strand
CG9837-RE 30..650 17..639 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:44:51 Download gff for BO13711.complete
Subject Subject Range Query Range Percent Splice Strand
CG9837-RA 30..650 17..637 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:13:52 Download gff for BO13711.complete
Subject Subject Range Query Range Percent Splice Strand
CG9837-RE 30..650 17..639 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:13:52 Download gff for BO13711.complete
Subject Subject Range Query Range Percent Splice Strand
3R 8809098..8809662 76..639 99 <- Minus
3R 8809725..8809782 17..75 94   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:45:49 Download gff for BO13711.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 4635447..4635504 17..75 94   Minus
arm_3R 4634820..4635384 76..639 99 <- Minus

BO13711.pep Sequence

Translation from 16 to 655

> BO13711.pep
MWSSKTILVFLAAFTLVQGSMRFHFTLDFHVQQPPNASDTIDKTIIVEND
RISMVDNEGATTKAPMTQWTDQDQYNQDALLKVTDTRRSVQQLNTELSPL
VGRSTDLARRIKQSMRYVNEVDANLDDLSNFGQLVELLKKFVILVDNLRD
PNNLGGIRSLEYVLLKLALEKYDLLNKRQEIGEYLERAESAWRRYQNTQV
VVLDNSTASFLDH

BO13711.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:57:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG9837-PF 207 CG9837-PF 1..207 1..207 1049 100 Plus
CG9837-PE 207 CG9837-PE 1..207 1..207 1049 100 Plus
CG9837-PD 187 CG9837-PD 1..187 21..207 951 100 Plus