Clone Sequence Records
BO13711.3prime Sequence
628 bp (617 high quality bases) assembled on 2006-05-08
> BO13711.3prime
ATGGTCTAGAAAGCTTGCGGTGGAGTTATCCAGAACAACCACCTGTGTGT
TTTGGTATCTTCGCCAGGCACTCTCCGCCCTTTCCAAGTATTCACCGATC
TCCTGTCGCTTGTTCAGAAGGTCGTACTTCTCTAGAGCCAACTTCAGGAG
TACGTACTCCAGGCTTCGAATGCCTCCGAGATTGTTTGGATCCCTTAGGT
TATCGACTAGGATTACGAATTTCTTGAGCAGCTCCACCAGCTGCCCAAAG
TTGCTCAAATCGTCCAGATTAGCATCCACCTCGTTGACGTATCGCATACT
CTGCTTAATCCTTCTGGCCAAATCGGTGCTCCTGCCAACCAGGGGTGAGA
GCTCCGTATTCAGCTGTTGCACCGATCTGCGCGTATCGGTCACCTTCAGC
AATGCGTCCTGATTATACTGATCCTGATCTGTCCACTGGGTCATCGGAGC
CTTAGTAGTCGCTCCTTCGTTGTCCACCATAGATATCCGATCGTTCTCCA
CAATAATGGTCTTGTCGATGGTGTCGGATGCATTCGGCGGCTGCTGTACG
TGAAAGTCCAAGGTGAAGTGAACCCGCATGCTACCCTGGACCAAAGTAAA
ATGCTGCTAGGAAAACCAAATAGTCTTA
BO13711.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:09:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9837-PA | 624 | CG9837-RA | 40..621 | 600..19 | 2885 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:00:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9837-RF | 2072 | CG9837-RF | 41..650 | 628..19 | 2990 | 99.5 | Minus |
CG9837-RE | 802 | CG9837-RE | 41..650 | 628..19 | 2990 | 99.5 | Minus |
CG9837-RD | 1488 | CG9837-RD | 568..1137 | 588..19 | 2835 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:59:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 8809101..8809669 | 19..587 | 2830 | 99.8 | Plus |
Blast to na_te.dros performed on 2015-02-12 18:00:01 has no hits.
BO13711.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:10:40 Download gff for
BO13711.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9837-PA | 13..624 | 16..627 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:59:20 Download gff for
BO13711.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9837-PA | 13..624 | 16..627 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 03:55:35 Download gff for
BO13711.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9837-RE | 42..650 | 19..627 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:09:30 Download gff for
BO13711.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9837-RE | 42..650 | 19..627 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:09:30 Download gff for
BO13711.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 8809101..8809662 | 19..580 | 99 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 03:55:35 Download gff for
BO13711.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 4634823..4635384 | 19..580 | 99 | <- | Plus |
BO13711.5prime Sequence
653 bp (637 high quality bases) assembled on 2006-05-08
> BO13711.5prime
GAAGTTATCAGTCGACATGTGGTCCTCTAAGACTATTTTGGTTTTCCTAG
CAGCATTTACTTTGGTCCAGGGTAGCATGCGGTTTCACTTCACCTTGGAC
TTTCACGTACAGCAGCCGCCGAATGCATCCGACACCATCGACAAGACCAT
TATTGTGGAGAACGATCGGATATCTATGGTGGACAACGAAGGAGCGACTA
CTAAGGCTCCGATGACCCAGTGGACAGATCAGGATCAGTATAATCAGGAC
GCATTGCTGAAGGTGACCGATACGCGCAGATCGGTGCAACAGCTGAATAC
GGAGCTCTCACCCCTGGTTGGCAGGAGCACCGATTTGGCCAGAAGGATTA
AGCAGAGTATGCGATACGTCAACGAGGTGGATGCTAATCTGGACGATTTG
AGCAACTTTGGGCAGCTGGTGGAGCTGCTCAAGAAATTCGTAATCCTAGT
CGATAACCTAAGGGATCCAAACAATCTCGGAGGCATTCGAAGCCTGGAGT
ACGTACTCCTGAAGTTGGCTCTAGAGAAGTACGACCTTCTGAACAAGCGA
CAGGAGATCGGTGAATACTTGGAAAGGGCGGAGAGTGCCTGGCGAAGATA
CCAAAACACACAGGTGGTTGTTCTGGATAACTCCACCGCAAGCTTTCTAG
ACC
BO13711.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:09:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9837-PA | 624 | CG9837-RA | 1..621 | 17..637 | 3105 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:31:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9837-RF | 2072 | CG9837-RF | 30..650 | 17..637 | 3105 | 100 | Plus |
CG9837-RE | 802 | CG9837-RE | 30..650 | 17..637 | 3105 | 100 | Plus |
CG9837-RD | 1488 | CG9837-RD | 568..1137 | 68..637 | 2850 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:31:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 8809101..8809669 | 637..69 | 2845 | 100 | Minus |
3R | 32079331 | 3R | 8809728..8809782 | 71..17 | 275 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 20:31:35 has no hits.
BO13711.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:10:41 Download gff for
BO13711.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9837-PA | 1..624 | 17..640 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:59:21 Download gff for
BO13711.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9837-PA | 1..624 | 17..640 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:40:46 Download gff for
BO13711.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9837-RE | 30..650 | 17..637 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:45:32 Download gff for
BO13711.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9837-RE | 30..650 | 17..637 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 22:45:32 Download gff for
BO13711.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 8809101..8809662 | 76..637 | 100 | <- | Minus |
3R | 8809725..8809782 | 17..75 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:40:46 Download gff for
BO13711.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 4634823..4635384 | 76..637 | 100 | <- | Minus |
arm_3R | 4635447..4635504 | 17..75 | 94 | | Minus |
BO13711.complete Sequence
655 bp assembled on 2006-10-11
GenBank Submission: FJ632916
> BO13711.complete
GAAGTTATCAGTCGACATGTGGTCCTCTAAGACTATTTTGGTTTTCCTAG
CAGCATTTACTTTGGTCCAGGGTAGCATGCGGTTTCACTTCACCTTGGAC
TTTCACGTACAGCAGCCGCCGAATGCATCCGACACCATCGACAAGACCAT
TATTGTGGAGAACGATCGGATATCTATGGTGGACAACGAAGGAGCGACTA
CTAAGGCTCCGATGACCCAGTGGACAGATCAGGATCAGTATAATCAGGAC
GCATTGCTGAAGGTGACCGATACGCGCAGATCGGTGCAACAGCTGAATAC
GGAGCTCTCACCCCTGGTTGGCAGGAGCACCGATTTGGCCAGAAGGATTA
AGCAGAGTATGCGATACGTCAACGAGGTGGATGCTAATCTGGACGATTTG
AGCAACTTTGGGCAGCTGGTGGAGCTGCTCAAGAAATTCGTAATCCTAGT
CGATAACCTAAGGGATCCAAACAATCTCGGAGGCATTCGAAGCCTGGAGT
ACGTACTCCTGAAGTTGGCTCTAGAGAAGTACGACCTTCTGAACAAGCGA
CAGGAGATCGGTGAATACTTGGAAAGGGCGGAGAGTGCCTGGCGAAGATA
CCAAAACACACAGGTGGTTGTTCTGGATAACTCCACCGCAAGCTTTCTAG
ACCAT
BO13711.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:32:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9837-RF | 624 | CG9837-PF | 1..621 | 17..637 | 3105 | 100 | Plus |
CG9837-RE | 624 | CG9837-PE | 1..621 | 17..637 | 3105 | 100 | Plus |
CG9837-RD | 564 | CG9837-PD | 1..561 | 77..637 | 2805 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:32:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9837-RF | 2072 | CG9837-RF | 30..650 | 17..637 | 3105 | 100 | Plus |
CG9837-RE | 802 | CG9837-RE | 30..650 | 17..637 | 3105 | 100 | Plus |
CG9837-RD | 1488 | CG9837-RD | 568..1137 | 68..637 | 2850 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:32:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 8809101..8809669 | 637..69 | 2845 | 100 | Minus |
3R | 32079331 | 3R | 8809728..8809782 | 71..17 | 275 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:32:12 has no hits.
BO13711.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:44:51 Download gff for
BO13711.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9837-RA | 1..624 | 17..640 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:58:47 Download gff for
BO13711.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9837-RA | 30..650 | 17..637 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:45:49 Download gff for
BO13711.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9837-RE | 30..650 | 17..639 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:44:51 Download gff for
BO13711.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9837-RA | 30..650 | 17..637 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:13:52 Download gff for
BO13711.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9837-RE | 30..650 | 17..639 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:13:52 Download gff for
BO13711.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 8809098..8809662 | 76..639 | 99 | <- | Minus |
3R | 8809725..8809782 | 17..75 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:45:49 Download gff for
BO13711.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 4635447..4635504 | 17..75 | 94 | | Minus |
arm_3R | 4634820..4635384 | 76..639 | 99 | <- | Minus |
BO13711.pep Sequence
Translation from 16 to 655
> BO13711.pep
MWSSKTILVFLAAFTLVQGSMRFHFTLDFHVQQPPNASDTIDKTIIVEND
RISMVDNEGATTKAPMTQWTDQDQYNQDALLKVTDTRRSVQQLNTELSPL
VGRSTDLARRIKQSMRYVNEVDANLDDLSNFGQLVELLKKFVILVDNLRD
PNNLGGIRSLEYVLLKLALEKYDLLNKRQEIGEYLERAESAWRRYQNTQV
VVLDNSTASFLDH
BO13711.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:57:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9837-PF | 207 | CG9837-PF | 1..207 | 1..207 | 1049 | 100 | Plus |
CG9837-PE | 207 | CG9837-PE | 1..207 | 1..207 | 1049 | 100 | Plus |
CG9837-PD | 187 | CG9837-PD | 1..187 | 21..207 | 951 | 100 | Plus |