Clone BO13725 Report

Search the DGRC for BO13725

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:137
Well:25
Vector:pDNR-Dual
Associated Gene/TranscriptCG17574-RA
Protein status:BO13725.pep: validated full length
Sequenced Size:502

Clone Sequence Records

BO13725.5prime Sequence

500 bp (499 high quality bases) assembled on 2006-05-08

> BO13725.5prime
GAAGTTATCAGTCGACATGGATTTCTGGGGCATTTTCATGTTCTTTCTGC
TCACCTTCCTCATCATGAGTTGCTGCGGATATTGCTGCACCAGCAGACGC
CAAGGTGCCGTTCTGTCCACGCCTGTGGTGGTGACCTCCGCCACCCACAC
GGCTCCCGGCGGATATCCGGTCACACAGCTGCCTCCGCCGGGCTATCCAT
CGAGCAATGCCTACGTAACTGCGACCTCGTACCCCGTACAGACCACCGGC
AACGTGACTGTGCAGATGCCCATGCCGATGAGCCACCAGAACCAGCAGCA
AATGCCAATGCCTATGCCGATGCCGGGTCAGCAAACGCATGGCGTGGCGT
ATCCGACGTATCCTGGCGCCGGGGCTGCCAACATGAATCCGCCGCCGTAT
GACATGTCCATGGCTAATCCAGGACCTAGTGTTATGCCCGCTGGATATGA
GAAGCAAGCTCCCTACAATCCCCACTTTGGCCAGGCAAGCTTTCTAGACC

BO13725.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:09:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG17574-PA 471 CG17574-RA 1..468 17..484 2340 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 08:59:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG17574-RA 1162 CG17574-RA 308..780 12..484 2350 99.8 Plus
CG17574-RJ 1165 CG17574-RJ 308..783 12..484 2310 99.2 Plus
CG17574-RH 996 CG17574-RH 249..614 119..484 1830 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 08:58:55
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 12849740..12849897 484..327 790 100 Minus
2R 25286936 2R 12850099..12850228 249..120 650 100 Minus
2R 25286936 2R 12868943..12869050 119..12 525 99.1 Minus
2R 25286936 2R 12849961..12850039 327..249 395 100 Minus
Blast to na_te.dros performed on 2015-02-02 08:58:59 has no hits.

BO13725.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:10:57 Download gff for BO13725.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17574-PA 1..471 17..487 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:59:46 Download gff for BO13725.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17574-PA 1..471 17..487 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 03:52:05 Download gff for BO13725.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17574-RA 305..784 7..488 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:11:06 Download gff for BO13725.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17574-RA 305..784 7..488 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 12:11:06 Download gff for BO13725.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 12849735..12849896 328..488 98 <- Minus
2R 12849961..12850038 250..327 100 <- Minus
2R 12850099..12850228 120..249 100 <- Minus
2R 12868943..12869053 7..119 96   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 03:52:05 Download gff for BO13725.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 8737240..8737401 328..488 98 <- Minus
arm_2R 8737466..8737543 250..327 100 <- Minus
arm_2R 8737604..8737733 120..249 100 <- Minus
arm_2R 8756448..8756558 7..119 96   Minus

BO13725.complete Sequence

502 bp assembled on 2006-10-11

GenBank Submission: FJ632917

> BO13725.complete
GAAGTTATCAGTCGACATGGATTTCTGGGGCATTTTCATGTTCTTTCTGC
TCACCTTCCTCATCATGAGTTGCTGCGGATATTGCTGCACCAGCAGACGC
CAAGGTGCCGTTCTGTCCACGCCTGTGGTGGTGACCTCCGCCACCCACAC
GGCTCCCGGCGGATATCCGGTCACACAGCTGCCTCCGCCGGGCTATCCAT
CGAGCAATGCCTACGTAACTGCGACCTCGTACCCCGTACAGACCACCGGC
AACGTGACTGTGCAGATGCCCATGCCGATGAGCCACCAGAACCAGCAGCA
AATGCCAATGCCTATGCCGATGCCGGGTCAGCAAACGCATGGCGTGGCGT
ATCCGACGTATCCTGGCGCCGGGGCTGCCAACATGAATCCGCCGCCGTAT
GACATGTCCATGGCTAATCCAGGACCTAGTGTTATGCCCGCTGGATATGA
GAAGCAAGCTCCCTACAATCCCCACTTTGGCCAGGCAAGCTTTCTAGACC
AT

BO13725.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:06:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG17574-RA 471 CG17574-PA 1..468 17..484 2340 100 Plus
CG17574-RJ 474 CG17574-PJ 1..471 17..484 2275 99.4 Plus
CG17574-RH 525 CG17574-PH 157..522 119..484 1830 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:06:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG17574-RA 1162 CG17574-RA 308..780 12..484 2350 99.8 Plus
CG17574-RJ 1165 CG17574-RJ 308..783 12..484 2285 99.2 Plus
CG17574-RH 996 CG17574-RH 249..614 119..484 1830 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:06:21
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 12849740..12849897 484..327 790 100 Minus
2R 25286936 2R 12850099..12850228 249..120 650 100 Minus
2R 25286936 2R 12868943..12869050 119..12 525 99.1 Minus
2R 25286936 2R 12849961..12850039 327..249 395 100 Minus
Blast to na_te.dros performed on 2014-11-28 08:06:22 has no hits.

BO13725.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:07:31 Download gff for BO13725.complete
Subject Subject Range Query Range Percent Splice Strand
CG17574-RA 1..471 17..487 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:48:41 Download gff for BO13725.complete
Subject Subject Range Query Range Percent Splice Strand
CG17574-RA 313..780 17..486 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:18:56 Download gff for BO13725.complete
Subject Subject Range Query Range Percent Splice Strand
CG17574-RA 313..780 17..486 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:07:31 Download gff for BO13725.complete
Subject Subject Range Query Range Percent Splice Strand
CG17574-RA 305..784 7..488 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:11:03 Download gff for BO13725.complete
Subject Subject Range Query Range Percent Splice Strand
CG17574-RA 313..780 17..486 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:11:03 Download gff for BO13725.complete
Subject Subject Range Query Range Percent Splice Strand
2R 12849737..12849896 328..486 98 <- Minus
2R 12849961..12850038 250..327 100 <- Minus
2R 12850099..12850228 120..249 100 <- Minus
2R 12868943..12869045 17..119 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:18:56 Download gff for BO13725.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 8737242..8737401 328..486 98 <- Minus
arm_2R 8737466..8737543 250..327 100 <- Minus
arm_2R 8737604..8737733 120..249 100 <- Minus
arm_2R 8756448..8756550 17..119 100   Minus

BO13725.pep Sequence

Translation from 16 to 502

> BO13725.pep
MDFWGIFMFFLLTFLIMSCCGYCCTSRRQGAVLSTPVVVTSATHTAPGGY
PVTQLPPPGYPSSNAYVTATSYPVQTTGNVTVQMPMPMSHQNQQQMPMPM
PMPGQQTHGVAYPTYPGAGAANMNPPPYDMSMANPGPSVMPAGYEKQAPY
NPHFGQASFLDH

BO13725.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:02:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG17574-PA 156 CG17574-PA 1..156 1..156 871 100 Plus
CG17574-PJ 157 CG17574-PJ 1..157 1..156 859 99.4 Plus
CG17574-PI 175 CG17574-PI 31..175 6..156 699 86.1 Plus
CG17574-PF 162 CG17574-PF 7..162 3..156 688 82.2 Plus
CG17574-PL 157 CG17574-PL 14..157 10..156 685 85 Plus