Clone Sequence Records
BO13725.5prime Sequence
500 bp (499 high quality bases) assembled on 2006-05-08
> BO13725.5prime
GAAGTTATCAGTCGACATGGATTTCTGGGGCATTTTCATGTTCTTTCTGC
TCACCTTCCTCATCATGAGTTGCTGCGGATATTGCTGCACCAGCAGACGC
CAAGGTGCCGTTCTGTCCACGCCTGTGGTGGTGACCTCCGCCACCCACAC
GGCTCCCGGCGGATATCCGGTCACACAGCTGCCTCCGCCGGGCTATCCAT
CGAGCAATGCCTACGTAACTGCGACCTCGTACCCCGTACAGACCACCGGC
AACGTGACTGTGCAGATGCCCATGCCGATGAGCCACCAGAACCAGCAGCA
AATGCCAATGCCTATGCCGATGCCGGGTCAGCAAACGCATGGCGTGGCGT
ATCCGACGTATCCTGGCGCCGGGGCTGCCAACATGAATCCGCCGCCGTAT
GACATGTCCATGGCTAATCCAGGACCTAGTGTTATGCCCGCTGGATATGA
GAAGCAAGCTCCCTACAATCCCCACTTTGGCCAGGCAAGCTTTCTAGACC
BO13725.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:09:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17574-PA | 471 | CG17574-RA | 1..468 | 17..484 | 2340 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 08:59:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17574-RA | 1162 | CG17574-RA | 308..780 | 12..484 | 2350 | 99.8 | Plus |
CG17574-RJ | 1165 | CG17574-RJ | 308..783 | 12..484 | 2310 | 99.2 | Plus |
CG17574-RH | 996 | CG17574-RH | 249..614 | 119..484 | 1830 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 08:58:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 12849740..12849897 | 484..327 | 790 | 100 | Minus |
2R | 25286936 | 2R | 12850099..12850228 | 249..120 | 650 | 100 | Minus |
2R | 25286936 | 2R | 12868943..12869050 | 119..12 | 525 | 99.1 | Minus |
2R | 25286936 | 2R | 12849961..12850039 | 327..249 | 395 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-02 08:58:59 has no hits.
BO13725.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:10:57 Download gff for
BO13725.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17574-PA | 1..471 | 17..487 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:59:46 Download gff for
BO13725.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17574-PA | 1..471 | 17..487 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 03:52:05 Download gff for
BO13725.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17574-RA | 305..784 | 7..488 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:11:06 Download gff for
BO13725.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17574-RA | 305..784 | 7..488 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 12:11:06 Download gff for
BO13725.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 12849735..12849896 | 328..488 | 98 | <- | Minus |
2R | 12849961..12850038 | 250..327 | 100 | <- | Minus |
2R | 12850099..12850228 | 120..249 | 100 | <- | Minus |
2R | 12868943..12869053 | 7..119 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 03:52:05 Download gff for
BO13725.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 8737240..8737401 | 328..488 | 98 | <- | Minus |
arm_2R | 8737466..8737543 | 250..327 | 100 | <- | Minus |
arm_2R | 8737604..8737733 | 120..249 | 100 | <- | Minus |
arm_2R | 8756448..8756558 | 7..119 | 96 | | Minus |
BO13725.complete Sequence
502 bp assembled on 2006-10-11
GenBank Submission: FJ632917
> BO13725.complete
GAAGTTATCAGTCGACATGGATTTCTGGGGCATTTTCATGTTCTTTCTGC
TCACCTTCCTCATCATGAGTTGCTGCGGATATTGCTGCACCAGCAGACGC
CAAGGTGCCGTTCTGTCCACGCCTGTGGTGGTGACCTCCGCCACCCACAC
GGCTCCCGGCGGATATCCGGTCACACAGCTGCCTCCGCCGGGCTATCCAT
CGAGCAATGCCTACGTAACTGCGACCTCGTACCCCGTACAGACCACCGGC
AACGTGACTGTGCAGATGCCCATGCCGATGAGCCACCAGAACCAGCAGCA
AATGCCAATGCCTATGCCGATGCCGGGTCAGCAAACGCATGGCGTGGCGT
ATCCGACGTATCCTGGCGCCGGGGCTGCCAACATGAATCCGCCGCCGTAT
GACATGTCCATGGCTAATCCAGGACCTAGTGTTATGCCCGCTGGATATGA
GAAGCAAGCTCCCTACAATCCCCACTTTGGCCAGGCAAGCTTTCTAGACC
AT
BO13725.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:06:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17574-RA | 471 | CG17574-PA | 1..468 | 17..484 | 2340 | 100 | Plus |
CG17574-RJ | 474 | CG17574-PJ | 1..471 | 17..484 | 2275 | 99.4 | Plus |
CG17574-RH | 525 | CG17574-PH | 157..522 | 119..484 | 1830 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:06:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17574-RA | 1162 | CG17574-RA | 308..780 | 12..484 | 2350 | 99.8 | Plus |
CG17574-RJ | 1165 | CG17574-RJ | 308..783 | 12..484 | 2285 | 99.2 | Plus |
CG17574-RH | 996 | CG17574-RH | 249..614 | 119..484 | 1830 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:06:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 12849740..12849897 | 484..327 | 790 | 100 | Minus |
2R | 25286936 | 2R | 12850099..12850228 | 249..120 | 650 | 100 | Minus |
2R | 25286936 | 2R | 12868943..12869050 | 119..12 | 525 | 99.1 | Minus |
2R | 25286936 | 2R | 12849961..12850039 | 327..249 | 395 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 08:06:22 has no hits.
BO13725.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:07:31 Download gff for
BO13725.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17574-RA | 1..471 | 17..487 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:48:41 Download gff for
BO13725.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17574-RA | 313..780 | 17..486 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:18:56 Download gff for
BO13725.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17574-RA | 313..780 | 17..486 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:07:31 Download gff for
BO13725.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17574-RA | 305..784 | 7..488 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:11:03 Download gff for
BO13725.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17574-RA | 313..780 | 17..486 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:11:03 Download gff for
BO13725.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 12849737..12849896 | 328..486 | 98 | <- | Minus |
2R | 12849961..12850038 | 250..327 | 100 | <- | Minus |
2R | 12850099..12850228 | 120..249 | 100 | <- | Minus |
2R | 12868943..12869045 | 17..119 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:18:56 Download gff for
BO13725.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 8737242..8737401 | 328..486 | 98 | <- | Minus |
arm_2R | 8737466..8737543 | 250..327 | 100 | <- | Minus |
arm_2R | 8737604..8737733 | 120..249 | 100 | <- | Minus |
arm_2R | 8756448..8756550 | 17..119 | 100 | | Minus |
BO13725.pep Sequence
Translation from 16 to 502
> BO13725.pep
MDFWGIFMFFLLTFLIMSCCGYCCTSRRQGAVLSTPVVVTSATHTAPGGY
PVTQLPPPGYPSSNAYVTATSYPVQTTGNVTVQMPMPMSHQNQQQMPMPM
PMPGQQTHGVAYPTYPGAGAANMNPPPYDMSMANPGPSVMPAGYEKQAPY
NPHFGQASFLDH
BO13725.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:02:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17574-PA | 156 | CG17574-PA | 1..156 | 1..156 | 871 | 100 | Plus |
CG17574-PJ | 157 | CG17574-PJ | 1..157 | 1..156 | 859 | 99.4 | Plus |
CG17574-PI | 175 | CG17574-PI | 31..175 | 6..156 | 699 | 86.1 | Plus |
CG17574-PF | 162 | CG17574-PF | 7..162 | 3..156 | 688 | 82.2 | Plus |
CG17574-PL | 157 | CG17574-PL | 14..157 | 10..156 | 685 | 85 | Plus |