Clone Sequence Records
BO13727.complete Sequence
505 bp assembled on 2010-02-09
GenBank Submission: FJ632918
> BO13727.complete
GAAGTTATCAGTCGACATGTTGCGTCTGAGTTCGCTCCTGCCTGTCGCCT
TTGCTCTGGTGTTGTCATCCGTCTCCGCTGAGATAGTCAACTTTCAGACT
TGCGAAGATAGTGTGGACTCCTGCTCGATTAGTCAGGTGCGGGTGACGCC
CTGTCCGGAAGCCAATGCCAATGCCGCATGCCACATTCGCCGGAGGCACC
GCTTCACGATGAGCTTCGACTTTACGCCCCACTTCGATGCGGACACCCTG
GTGGCCAGCTTGGGCTGGGCCAAGAGCGAGAACGTGGAGCTGCCCCTGCT
TACCATGGACCAGGAGGCCTGCAAGTACACCACCTGCCCCGTGAGATCCG
GAGTCACCCAGACCTACACCAACAACATGCCCGCCGACGCCAGGTTCCCG
CTGAGTCCATACACCATCCGTTGGGCCCTGAAGGATCCGGTTTCCCAGAA
ACGTTGCTGCTTCACCATCGACATCAAGGTGGTGCGCGCAAGCTTTCTAG
ACCAT
BO13727.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:20:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Npc2h-RC | 474 | CG11315-PC | 1..471 | 17..487 | 2355 | 100 | Plus |
Npc2h-RA | 474 | CG11315-PA | 1..471 | 17..487 | 2355 | 100 | Plus |
Npc2h-RB | 393 | CG11315-PB | 1..308 | 17..324 | 1540 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:20:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Npc2h-RC | 597 | CG11315-RC | 30..501 | 16..487 | 2360 | 100 | Plus |
Npc2h-RA | 812 | CG11315-RA | 30..501 | 16..487 | 2360 | 100 | Plus |
Npc2h-RB | 731 | CG11315-RB | 30..338 | 16..324 | 1545 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:20:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 30745790..30746261 | 487..16 | 2360 | 100 | Minus |
3R | 32079331 | 3R | 30744757..30745180 | 487..64 | 875 | 80.4 | Minus |
Blast to na_te.dros performed on 2014-11-28 04:20:38 has no hits.
BO13727.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:02:11 Download gff for
BO13727.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11315-RA | 1..474 | 17..488 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:09:11 Download gff for
BO13727.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11315-RA | 34..499 | 22..489 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:57:11 Download gff for
BO13727.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Npc2h-RA | 34..499 | 22..489 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:49:58 Download gff for
BO13727.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11315-RA | 34..499 | 22..489 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:26:10 Download gff for
BO13727.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Npc2h-RA | 36..501 | 22..489 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:26:10 Download gff for
BO13727.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 30745786..30746255 | 22..489 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:57:11 Download gff for
BO13727.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 26571508..26571977 | 22..489 | 99 | | Minus |
BO13727.5prime Sequence
503 bp (502 high quality bases) assembled on 2006-05-08
> BO13727.5prime
GAAGTTATCAGTCGACATGTTGCGTCTGAGTTCGCTCCTGCCTGTCGCCT
TTGCTCTGGTGTTGTCATCCGTCTCCGCTGAGATAGTCAACTTTCAGACT
TGCGAAGATAGTGTGGACTCCTGCTCGATTAGTCAGGTGCGGGTGACGCC
CTGTCCGGAAGCCAATGCCAATGCCGCATGCCACATTCGCCGGAGGCACC
GCTTCACGATGAGCTTCGACTTTACGCCCCACTTCGATGCGGACACCCTG
GTGGCCAGCTTGGGCTGGGCCAAGAGCGAGAACGTGGAGCTGCCCCTGCT
TACCATGGACCAGGAGGCCTGCAAGTACACCACCTGCCCCGTGAGATCCG
GAGTCACCCAGACCTACACCAACAACATGCCCGCCGACGCCAGGTTCCCG
CTGAGTCCATACACCATCCGTTGGGCCCTGAAGGATCCGGTTTCCCAGAA
ACGTTGCTGCTTCACCATCGACATCAAGGTGGTGCGCGCAAGCTTTCTAG
ACC
BO13727.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:09:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11315-PA | 474 | CG11315-RA | 1..471 | 17..487 | 2355 | 100 | Plus |
CG11315-PB | 393 | CG11315-RB | 1..308 | 17..324 | 1540 | 100 | Plus |
CG11315-PB | 393 | CG11315-RB | 309..390 | 406..487 | 410 | 100 | Plus |
CG11314-PA | 480 | CG11314-RA | 198..290 | 208..300 | 315 | 93.5 | Plus |
CG11314-PA | 480 | CG11314-RA | 391..477 | 401..487 | 260 | 91.9 | Plus |
CG11314-PA | 480 | CG11314-RA | 307..344 | 317..354 | 140 | 94.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:50:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Npc2h-RC | 597 | CG11315-RC | 30..501 | 16..487 | 2360 | 100 | Plus |
Npc2h-RA | 812 | CG11315-RA | 30..501 | 16..487 | 2360 | 100 | Plus |
Npc2h-RB | 731 | CG11315-RB | 30..338 | 16..324 | 1545 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:50:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 30745790..30746261 | 487..16 | 2360 | 100 | Minus |
3R | 32079331 | 3R | 30744757..30745180 | 487..64 | 875 | 80.4 | Minus |
Blast to na_te.dros performed on 2015-02-12 10:50:44 has no hits.
BO13727.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:10:58 Download gff for
BO13727.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11315-PA | 1..474 | 17..488 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:59:47 Download gff for
BO13727.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11315-PA | 1..474 | 17..488 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 05:16:01 Download gff for
BO13727.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Npc2h-RA | 23..506 | 12..492 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:21:14 Download gff for
BO13727.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Npc2h-RA | 25..508 | 12..492 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:21:14 Download gff for
BO13727.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 30745783..30746266 | 12..492 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 05:16:01 Download gff for
BO13727.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 26571505..26571988 | 12..492 | 99 | | Minus |
BO13727.pep Sequence
Translation from 16 to 505
> BO13727.pep
MLRLSSLLPVAFALVLSSVSAEIVNFQTCEDSVDSCSISQVRVTPCPEAN
ANAACHIRRRHRFTMSFDFTPHFDADTLVASLGWAKSENVELPLLTMDQE
ACKYTTCPVRSGVTQTYTNNMPADARFPLSPYTIRWALKDPVSQKRCCFT
IDIKVVRASFLDH
BO13727.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:52:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Npc2h-PC | 157 | CG11315-PC | 1..157 | 1..157 | 827 | 100 | Plus |
Npc2h-PA | 157 | CG11315-PA | 1..157 | 1..157 | 827 | 100 | Plus |
Npc2g-PB | 159 | CG11314-PB | 1..159 | 1..157 | 643 | 78 | Plus |
Npc2g-PA | 159 | CG11314-PA | 1..159 | 1..157 | 643 | 78 | Plus |
Npc2h-PB | 130 | CG11315-PB | 1..130 | 1..157 | 638 | 82.2 | Plus |