Clone BO13727 Report

Search the DGRC for BO13727

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:137
Well:27
Vector:pDNR-Dual
Associated Gene/TranscriptNpc2h-RA
Protein status:BO13727.pep: Imported from assembly
Sequenced Size:505

Clone Sequence Records

BO13727.complete Sequence

505 bp assembled on 2010-02-09

GenBank Submission: FJ632918

> BO13727.complete
GAAGTTATCAGTCGACATGTTGCGTCTGAGTTCGCTCCTGCCTGTCGCCT
TTGCTCTGGTGTTGTCATCCGTCTCCGCTGAGATAGTCAACTTTCAGACT
TGCGAAGATAGTGTGGACTCCTGCTCGATTAGTCAGGTGCGGGTGACGCC
CTGTCCGGAAGCCAATGCCAATGCCGCATGCCACATTCGCCGGAGGCACC
GCTTCACGATGAGCTTCGACTTTACGCCCCACTTCGATGCGGACACCCTG
GTGGCCAGCTTGGGCTGGGCCAAGAGCGAGAACGTGGAGCTGCCCCTGCT
TACCATGGACCAGGAGGCCTGCAAGTACACCACCTGCCCCGTGAGATCCG
GAGTCACCCAGACCTACACCAACAACATGCCCGCCGACGCCAGGTTCCCG
CTGAGTCCATACACCATCCGTTGGGCCCTGAAGGATCCGGTTTCCCAGAA
ACGTTGCTGCTTCACCATCGACATCAAGGTGGTGCGCGCAAGCTTTCTAG
ACCAT

BO13727.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:20:39
Subject Length Description Subject Range Query Range Score Percent Strand
Npc2h-RC 474 CG11315-PC 1..471 17..487 2355 100 Plus
Npc2h-RA 474 CG11315-PA 1..471 17..487 2355 100 Plus
Npc2h-RB 393 CG11315-PB 1..308 17..324 1540 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:20:40
Subject Length Description Subject Range Query Range Score Percent Strand
Npc2h-RC 597 CG11315-RC 30..501 16..487 2360 100 Plus
Npc2h-RA 812 CG11315-RA 30..501 16..487 2360 100 Plus
Npc2h-RB 731 CG11315-RB 30..338 16..324 1545 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:20:37
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 30745790..30746261 487..16 2360 100 Minus
3R 32079331 3R 30744757..30745180 487..64 875 80.4 Minus
Blast to na_te.dros performed on 2014-11-28 04:20:38 has no hits.

BO13727.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:02:11 Download gff for BO13727.complete
Subject Subject Range Query Range Percent Splice Strand
CG11315-RA 1..474 17..488 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:09:11 Download gff for BO13727.complete
Subject Subject Range Query Range Percent Splice Strand
CG11315-RA 34..499 22..489 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:57:11 Download gff for BO13727.complete
Subject Subject Range Query Range Percent Splice Strand
Npc2h-RA 34..499 22..489 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:49:58 Download gff for BO13727.complete
Subject Subject Range Query Range Percent Splice Strand
CG11315-RA 34..499 22..489 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:26:10 Download gff for BO13727.complete
Subject Subject Range Query Range Percent Splice Strand
Npc2h-RA 36..501 22..489 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:26:10 Download gff for BO13727.complete
Subject Subject Range Query Range Percent Splice Strand
3R 30745786..30746255 22..489 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:57:11 Download gff for BO13727.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 26571508..26571977 22..489 99   Minus

BO13727.5prime Sequence

503 bp (502 high quality bases) assembled on 2006-05-08

> BO13727.5prime
GAAGTTATCAGTCGACATGTTGCGTCTGAGTTCGCTCCTGCCTGTCGCCT
TTGCTCTGGTGTTGTCATCCGTCTCCGCTGAGATAGTCAACTTTCAGACT
TGCGAAGATAGTGTGGACTCCTGCTCGATTAGTCAGGTGCGGGTGACGCC
CTGTCCGGAAGCCAATGCCAATGCCGCATGCCACATTCGCCGGAGGCACC
GCTTCACGATGAGCTTCGACTTTACGCCCCACTTCGATGCGGACACCCTG
GTGGCCAGCTTGGGCTGGGCCAAGAGCGAGAACGTGGAGCTGCCCCTGCT
TACCATGGACCAGGAGGCCTGCAAGTACACCACCTGCCCCGTGAGATCCG
GAGTCACCCAGACCTACACCAACAACATGCCCGCCGACGCCAGGTTCCCG
CTGAGTCCATACACCATCCGTTGGGCCCTGAAGGATCCGGTTTCCCAGAA
ACGTTGCTGCTTCACCATCGACATCAAGGTGGTGCGCGCAAGCTTTCTAG
ACC

BO13727.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:09:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG11315-PA 474 CG11315-RA 1..471 17..487 2355 100 Plus
CG11315-PB 393 CG11315-RB 1..308 17..324 1540 100 Plus
CG11315-PB 393 CG11315-RB 309..390 406..487 410 100 Plus
CG11314-PA 480 CG11314-RA 198..290 208..300 315 93.5 Plus
CG11314-PA 480 CG11314-RA 391..477 401..487 260 91.9 Plus
CG11314-PA 480 CG11314-RA 307..344 317..354 140 94.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:50:45
Subject Length Description Subject Range Query Range Score Percent Strand
Npc2h-RC 597 CG11315-RC 30..501 16..487 2360 100 Plus
Npc2h-RA 812 CG11315-RA 30..501 16..487 2360 100 Plus
Npc2h-RB 731 CG11315-RB 30..338 16..324 1545 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:50:42
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 30745790..30746261 487..16 2360 100 Minus
3R 32079331 3R 30744757..30745180 487..64 875 80.4 Minus
Blast to na_te.dros performed on 2015-02-12 10:50:44 has no hits.

BO13727.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:10:58 Download gff for BO13727.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11315-PA 1..474 17..488 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:59:47 Download gff for BO13727.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11315-PA 1..474 17..488 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 05:16:01 Download gff for BO13727.5prime
Subject Subject Range Query Range Percent Splice Strand
Npc2h-RA 23..506 12..492 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:21:14 Download gff for BO13727.5prime
Subject Subject Range Query Range Percent Splice Strand
Npc2h-RA 25..508 12..492 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:21:14 Download gff for BO13727.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 30745783..30746266 12..492 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 05:16:01 Download gff for BO13727.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 26571505..26571988 12..492 99   Minus

BO13727.pep Sequence

Translation from 16 to 505

> BO13727.pep
MLRLSSLLPVAFALVLSSVSAEIVNFQTCEDSVDSCSISQVRVTPCPEAN
ANAACHIRRRHRFTMSFDFTPHFDADTLVASLGWAKSENVELPLLTMDQE
ACKYTTCPVRSGVTQTYTNNMPADARFPLSPYTIRWALKDPVSQKRCCFT
IDIKVVRASFLDH

BO13727.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:52:58
Subject Length Description Subject Range Query Range Score Percent Strand
Npc2h-PC 157 CG11315-PC 1..157 1..157 827 100 Plus
Npc2h-PA 157 CG11315-PA 1..157 1..157 827 100 Plus
Npc2g-PB 159 CG11314-PB 1..159 1..157 643 78 Plus
Npc2g-PA 159 CG11314-PA 1..159 1..157 643 78 Plus
Npc2h-PB 130 CG11315-PB 1..130 1..157 638 82.2 Plus