Clone Sequence Records
BO13752.3prime Sequence
405 bp (404 high quality bases) assembled on 2006-05-08
> BO13752.3prime
ATGGTCTAGAAAGCTTGCAACCTTGGGCTCCATGATCTGGGCTGGTGGCC
AGTCCCACTGCTTGGCAGGCGCGGCTTGGACCAACTTCTCCCAGGGCTTC
CAGCCGAGCATTTTGCGCGCAAGGATCAGCTCGTTCTCGGCCTGGACAAT
TAGCTCCTCCACTTGACCGCAACCGACGGCCTTTTCCAGGGCAGTGATGT
CCTTGTGTTGGGCCACAGAATCGGCGCGCTGCTTGACCAGTTGCTCCGTG
TACTTGCGGTAGCTGGCGTCCTGTGGCATCTTGGACACCGCCCGCAGAAT
CTTGCCATACAGAGCACTCAGCGTGTGGTGTGGATTGGTGGACACGGCGA
GTCCAGTCAAACCTGTGGACGCCCTTAATGATCTTGGCCATGTCGACTGA
TAACT
BO13752.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:10:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6463-PA | 375 | CG6463-RA | 18..372 | 373..19 | 1775 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:28:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6463-RA | 597 | CG6463-RA | 90..463 | 393..19 | 1850 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:28:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 10693318..10693506 | 19..207 | 945 | 100 | Plus |
3L | 28110227 | 3L | 10693706..10693868 | 208..370 | 815 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 19:28:33 has no hits.
BO13752.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:11:32 Download gff for
BO13752.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6463-PA | 1..375 | 18..391 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:00:36 Download gff for
BO13752.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6463-PA | 1..375 | 18..391 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 03:55:21 Download gff for
BO13752.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6463-RA | 90..469 | 11..393 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 23:31:56 Download gff for
BO13752.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6463-RA | 90..469 | 11..393 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 23:31:56 Download gff for
BO13752.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 10693312..10693506 | 11..207 | 97 | <- | Plus |
3L | 10693706..10693867 | 208..369 | 100 | <- | Plus |
3L | 10693997..10694019 | 370..393 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 03:55:21 Download gff for
BO13752.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 10687097..10687119 | 370..393 | 95 | | Plus |
arm_3L | 10686412..10686606 | 11..207 | 97 | <- | Plus |
arm_3L | 10686806..10686967 | 208..369 | 100 | <- | Plus |
BO13752.5prime Sequence
404 bp (403 high quality bases) assembled on 2006-05-08
> BO13752.5prime
GAAGTTATCAGTCGACATGGCCAAGATCATTAAGGCGTCCACAGGTTTGA
CTGGACTCGCCGTGTCCACCAATCCACACCACACGCTGAGTGCTCTGTAT
GGCAAGATTCTGCGGGCGGTGTCCAAGATGCCACAGGACGCCAGCTACCG
CAAGTACACGGAGCAACTGGTCAAGCAGCGCGCCGATTCTGTGGCCCAAC
ACAAGGACATCACTGCCCTGGAAAAGGCCGTCGGTTGCGGTCAAGTGGAG
GAGCTAATTGTCCAGGCCGAGAACGAGCTGATCCTTGCGCGCAAAATGCT
CGGCTGGAAGCCCTGGGAGAAGTTGGTCCAAGCCGCGCCTGCCAAGCAGT
GGGACTGGCCACCAGCCCAGATCATGGAGCCCAAGGTTGCAAGCTTTCTA
GACC
BO13752.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:10:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6463-PA | 375 | CG6463-RA | 1..372 | 17..388 | 1860 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:34:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6463-RA | 597 | CG6463-RA | 90..463 | 15..388 | 1870 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:33:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 10693318..10693506 | 388..200 | 945 | 100 | Minus |
3L | 28110227 | 3L | 10693706..10693868 | 199..37 | 815 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 20:34:02 has no hits.
BO13752.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:11:33 Download gff for
BO13752.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6463-PA | 1..375 | 17..389 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:00:38 Download gff for
BO13752.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6463-PA | 1..375 | 17..389 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:41:05 Download gff for
BO13752.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6463-RA | 90..469 | 15..396 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:51:54 Download gff for
BO13752.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6463-RA | 90..469 | 15..396 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 22:51:54 Download gff for
BO13752.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 10693312..10693506 | 200..396 | 97 | <- | Minus |
3L | 10693706..10693867 | 38..199 | 100 | <- | Minus |
3L | 10693997..10694019 | 15..37 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:41:05 Download gff for
BO13752.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 10686412..10686606 | 200..396 | 97 | <- | Minus |
arm_3L | 10686806..10686967 | 38..199 | 100 | <- | Minus |
arm_3L | 10687097..10687119 | 15..37 | 100 | | Minus |
BO13752.complete Sequence
406 bp assembled on 2006-10-11
GenBank Submission: FJ632920
> BO13752.complete
GAAGTTATCAGTCGACATGGCCAAGATCATTAAGGCGTCCACAGGTTTGA
CTGGACTCGCCGTGTCCACCAATCCACACCACACGCTGAGTGCTCTGTAT
GGCAAGATTCTGCGGGCGGTGTCCAAGATGCCACAGGACGCCAGCTACCG
CAAGTACACGGAGCAACTGGTCAAGCAGCGCGCCGATTCTGTGGCCCAAC
ACAAGGACATCACTGCCCTGGAAAAGGCCGTCGGTTGCGGTCAAGTGGAG
GAGCTAATTGTCCAGGCCGAGAACGAGCTGATCCTTGCGCGCAAAATGCT
CGGCTGGAAGCCCTGGGAGAAGTTGGTCCAAGCCGCGCCTGCCAAGCAGT
GGGACTGGCCACCAGCCCAGATCATGGAGCCCAAGGTTGCAAGCTTTCTA
GACCAT
BO13752.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:19:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6463-RA | 375 | CG6463-PA | 1..372 | 17..388 | 1860 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:19:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6463-RA | 597 | CG6463-RA | 90..463 | 15..388 | 1870 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:19:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 10693318..10693506 | 388..200 | 945 | 100 | Minus |
3L | 28110227 | 3L | 10693706..10693868 | 199..37 | 815 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 15:19:32 has no hits.
BO13752.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:06:12 Download gff for
BO13752.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6463-RA | 1..375 | 17..389 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:21:34 Download gff for
BO13752.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6463-RA | 88..467 | 15..396 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:39:46 Download gff for
BO13752.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6463-RA | 92..463 | 17..390 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:06:12 Download gff for
BO13752.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6463-RA | 88..467 | 15..396 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:05:07 Download gff for
BO13752.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6463-RA | 92..463 | 17..390 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:05:07 Download gff for
BO13752.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 10693706..10693867 | 38..199 | 100 | <- | Minus |
3L | 10693997..10694017 | 17..37 | 100 | | Minus |
3L | 10693316..10693506 | 200..390 | 98 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:39:46 Download gff for
BO13752.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 10686806..10686967 | 38..199 | 100 | <- | Minus |
arm_3L | 10687097..10687117 | 17..37 | 100 | | Minus |
arm_3L | 10686416..10686606 | 200..390 | 98 | <- | Minus |
BO13752.pep Sequence
Translation from 16 to 406
> BO13752.pep
MAKIIKASTGLTGLAVSTNPHHTLSALYGKILRAVSKMPQDASYRKYTEQ
LVKQRADSVAQHKDITALEKAVGCGQVEELIVQAENELILARKMLGWKPW
EKLVQAAPAKQWDWPPAQIMEPKVASFLDH
BO13752.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:04:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6463-PA | 124 | CG6463-PA | 1..124 | 1..124 | 639 | 100 | Plus |