Clone BO13752 Report

Search the DGRC for BO13752

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:137
Well:52
Vector:pDNR-Dual
Associated Gene/TranscriptCG6463-RA
Protein status:BO13752.pep: validated full length
Sequenced Size:406

Clone Sequence Records

BO13752.3prime Sequence

405 bp (404 high quality bases) assembled on 2006-05-08

> BO13752.3prime
ATGGTCTAGAAAGCTTGCAACCTTGGGCTCCATGATCTGGGCTGGTGGCC
AGTCCCACTGCTTGGCAGGCGCGGCTTGGACCAACTTCTCCCAGGGCTTC
CAGCCGAGCATTTTGCGCGCAAGGATCAGCTCGTTCTCGGCCTGGACAAT
TAGCTCCTCCACTTGACCGCAACCGACGGCCTTTTCCAGGGCAGTGATGT
CCTTGTGTTGGGCCACAGAATCGGCGCGCTGCTTGACCAGTTGCTCCGTG
TACTTGCGGTAGCTGGCGTCCTGTGGCATCTTGGACACCGCCCGCAGAAT
CTTGCCATACAGAGCACTCAGCGTGTGGTGTGGATTGGTGGACACGGCGA
GTCCAGTCAAACCTGTGGACGCCCTTAATGATCTTGGCCATGTCGACTGA
TAACT

BO13752.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:10:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG6463-PA 375 CG6463-RA 18..372 373..19 1775 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:28:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG6463-RA 597 CG6463-RA 90..463 393..19 1850 99.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:28:32
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 10693318..10693506 19..207 945 100 Plus
3L 28110227 3L 10693706..10693868 208..370 815 100 Plus
Blast to na_te.dros performed on 2015-02-12 19:28:33 has no hits.

BO13752.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:11:32 Download gff for BO13752.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6463-PA 1..375 18..391 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:00:36 Download gff for BO13752.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6463-PA 1..375 18..391 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 03:55:21 Download gff for BO13752.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6463-RA 90..469 11..393 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 23:31:56 Download gff for BO13752.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6463-RA 90..469 11..393 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 23:31:56 Download gff for BO13752.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 10693312..10693506 11..207 97 <- Plus
3L 10693706..10693867 208..369 100 <- Plus
3L 10693997..10694019 370..393 95   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 03:55:21 Download gff for BO13752.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 10687097..10687119 370..393 95   Plus
arm_3L 10686412..10686606 11..207 97 <- Plus
arm_3L 10686806..10686967 208..369 100 <- Plus

BO13752.5prime Sequence

404 bp (403 high quality bases) assembled on 2006-05-08

> BO13752.5prime
GAAGTTATCAGTCGACATGGCCAAGATCATTAAGGCGTCCACAGGTTTGA
CTGGACTCGCCGTGTCCACCAATCCACACCACACGCTGAGTGCTCTGTAT
GGCAAGATTCTGCGGGCGGTGTCCAAGATGCCACAGGACGCCAGCTACCG
CAAGTACACGGAGCAACTGGTCAAGCAGCGCGCCGATTCTGTGGCCCAAC
ACAAGGACATCACTGCCCTGGAAAAGGCCGTCGGTTGCGGTCAAGTGGAG
GAGCTAATTGTCCAGGCCGAGAACGAGCTGATCCTTGCGCGCAAAATGCT
CGGCTGGAAGCCCTGGGAGAAGTTGGTCCAAGCCGCGCCTGCCAAGCAGT
GGGACTGGCCACCAGCCCAGATCATGGAGCCCAAGGTTGCAAGCTTTCTA
GACC

BO13752.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:10:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG6463-PA 375 CG6463-RA 1..372 17..388 1860 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:34:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG6463-RA 597 CG6463-RA 90..463 15..388 1870 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:33:59
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 10693318..10693506 388..200 945 100 Minus
3L 28110227 3L 10693706..10693868 199..37 815 100 Minus
Blast to na_te.dros performed on 2015-02-10 20:34:02 has no hits.

BO13752.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:11:33 Download gff for BO13752.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6463-PA 1..375 17..389 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:00:38 Download gff for BO13752.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6463-PA 1..375 17..389 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:41:05 Download gff for BO13752.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6463-RA 90..469 15..396 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:51:54 Download gff for BO13752.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6463-RA 90..469 15..396 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 22:51:54 Download gff for BO13752.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 10693312..10693506 200..396 97 <- Minus
3L 10693706..10693867 38..199 100 <- Minus
3L 10693997..10694019 15..37 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:41:05 Download gff for BO13752.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 10686412..10686606 200..396 97 <- Minus
arm_3L 10686806..10686967 38..199 100 <- Minus
arm_3L 10687097..10687119 15..37 100   Minus

BO13752.complete Sequence

406 bp assembled on 2006-10-11

GenBank Submission: FJ632920

> BO13752.complete
GAAGTTATCAGTCGACATGGCCAAGATCATTAAGGCGTCCACAGGTTTGA
CTGGACTCGCCGTGTCCACCAATCCACACCACACGCTGAGTGCTCTGTAT
GGCAAGATTCTGCGGGCGGTGTCCAAGATGCCACAGGACGCCAGCTACCG
CAAGTACACGGAGCAACTGGTCAAGCAGCGCGCCGATTCTGTGGCCCAAC
ACAAGGACATCACTGCCCTGGAAAAGGCCGTCGGTTGCGGTCAAGTGGAG
GAGCTAATTGTCCAGGCCGAGAACGAGCTGATCCTTGCGCGCAAAATGCT
CGGCTGGAAGCCCTGGGAGAAGTTGGTCCAAGCCGCGCCTGCCAAGCAGT
GGGACTGGCCACCAGCCCAGATCATGGAGCCCAAGGTTGCAAGCTTTCTA
GACCAT

BO13752.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:19:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG6463-RA 375 CG6463-PA 1..372 17..388 1860 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:19:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG6463-RA 597 CG6463-RA 90..463 15..388 1870 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:19:31
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 10693318..10693506 388..200 945 100 Minus
3L 28110227 3L 10693706..10693868 199..37 815 100 Minus
Blast to na_te.dros performed on 2014-11-27 15:19:32 has no hits.

BO13752.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:06:12 Download gff for BO13752.complete
Subject Subject Range Query Range Percent Splice Strand
CG6463-RA 1..375 17..389 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:21:34 Download gff for BO13752.complete
Subject Subject Range Query Range Percent Splice Strand
CG6463-RA 88..467 15..396 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:39:46 Download gff for BO13752.complete
Subject Subject Range Query Range Percent Splice Strand
CG6463-RA 92..463 17..390 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:06:12 Download gff for BO13752.complete
Subject Subject Range Query Range Percent Splice Strand
CG6463-RA 88..467 15..396 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:05:07 Download gff for BO13752.complete
Subject Subject Range Query Range Percent Splice Strand
CG6463-RA 92..463 17..390 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:05:07 Download gff for BO13752.complete
Subject Subject Range Query Range Percent Splice Strand
3L 10693706..10693867 38..199 100 <- Minus
3L 10693997..10694017 17..37 100   Minus
3L 10693316..10693506 200..390 98 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:39:46 Download gff for BO13752.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 10686806..10686967 38..199 100 <- Minus
arm_3L 10687097..10687117 17..37 100   Minus
arm_3L 10686416..10686606 200..390 98 <- Minus

BO13752.pep Sequence

Translation from 16 to 406

> BO13752.pep
MAKIIKASTGLTGLAVSTNPHHTLSALYGKILRAVSKMPQDASYRKYTEQ
LVKQRADSVAQHKDITALEKAVGCGQVEELIVQAENELILARKMLGWKPW
EKLVQAAPAKQWDWPPAQIMEPKVASFLDH

BO13752.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:04:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG6463-PA 124 CG6463-PA 1..124 1..124 639 100 Plus