Clone BO13758 Report

Search the DGRC for BO13758

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:137
Well:58
Vector:pDNR-Dual
Associated Gene/TranscriptCG6044-RA
Protein status:BO13758.pep: validated full length
Sequenced Size:721

Clone Sequence Records

BO13758.3prime Sequence

614 bp (597 high quality bases) assembled on 2006-05-08

> BO13758.3prime
ATGGTCTAGAAAGCTTGCGAACCGAAAGGTCACTGCCAACTGGAGCGGGG
CCAGAAAGAGGCCCAGCAGCCAGAGGCTAATGTCCCGTCCGTGAGCCGCC
GAATCGTTGACGGAGGAAGCAGATGTGCCCGCCGGTGCCGGAAGCAGAGA
TGGAGCCGGGGTGCTTGGCTCCGGGCCAAAGCGAATGGTAGCCGTGTGTC
GCACTTTGTTCGGCAGTACCTCGCACTCGTAGCGCTCCTCGGTGGCATTG
GATGCCAGGGGAACGGTCAGGGAGAACTGCTCGTCCAGGGCATAGATGTG
GTTGAATATATTCATTCCGCTGGATACCTGTACCTTCTCCTTGTACCAGA
GAACGACGTGGTGTGCAGCATTATAATTTTTAACTGGGCACTCCAACTTG
GCGCTGGTCGCGTTCTGCGGCACATAGATATCCACATCGCTGTGCTCGAA
GTATGGCTCTGGAACTTTGGGATCAGCGGTCGACTTGGCCAGGTTTCCCG
GAGCCCGCTGCTGGTCCTCCTCGTAGTCGTAGTCCTTGCTGGTGTCTCCT
GCTGACGGGGCAGTGACGGCTCCCCCGGCTCCACCTCCGTTTCCGCCTCC
GGCGGCCGATGAAG

BO13758.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:10:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG6044-PA 690 CG6044-RA 92..687 614..19 2955 99.8 Minus
CG6044-PB 300 CG6044-RB 1..297 315..19 1485 100 Minus
CG6044-PC 300 CG6044-RC 1..297 315..19 1485 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:50:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG6044-RG 1652 CG6044-RG 321..916 614..19 2965 99.8 Minus
CG6044-RA 1484 CG6044-RA 321..916 614..19 2965 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:50:24
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 22407454..22407804 369..19 1755 100 Minus
2R 25286936 2R 22407080..22407325 614..369 1215 99.6 Minus
Blast to na_te.dros performed on 2015-02-10 15:50:28 has no hits.

BO13758.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:11:40 Download gff for BO13758.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6044-PA 92..690 16..614 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:00:50 Download gff for BO13758.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6044-PA 92..690 16..614 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 23:17:09 Download gff for BO13758.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6044-RA 321..922 13..614 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:25:41 Download gff for BO13758.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6044-RA 321..922 13..614 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:25:41 Download gff for BO13758.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 22407080..22407325 369..614 99 -> Minus
2R 22407455..22407810 13..368 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 23:17:09 Download gff for BO13758.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 18294585..18294830 369..614 99 -> Minus
arm_2R 18294960..18295315 13..368 99   Minus

BO13758.5prime Sequence

719 bp (669 high quality bases) assembled on 2006-05-08

> BO13758.5prime
GAAGTTATCAGTCGACATGAGGCATCTCTGGCTGCTCCTTCTTATCGCCT
GTGGATCTGTCCAGTTCCCAGGTGTGCTGACCTTGCCGGAGGCACTCCCA
GCCAAATCTTCATCGGCCGCTGGAGGCGGAAACGGAGGTGGAGCCGGGGG
AGCCGTCACTGCCCCGTCAGCAGGAGACACCAGCAAGGACTACGACTACG
AGGAGGACCAGCAGCGGGCTCCGGGAAACCTGGCCAAGTCGACCGCTGAT
CCCAAAGTTCCAGAGCCATACTTCGAGCACAGCGATGTGGATATCTATGT
GCCGCAGAACGCGACCAGCGCCAAGTTGGAGTGCCCAGTTAAAAATTATA
ATGCTGCACACCACGTCGTTCTCTGGTACAAGGAGAAGGTACAGGTATCC
AGCGGAATGAATATATTCAACCACATCTATGCCCTGGACGAGCAGTTCTC
CCTGACCGTTCCCCTGGCATCCAATGCCACCGAGGAGCGCTACGAGTGCG
AGGTACTGCCGAACAAAGTGCGACACACGGCTACCATTCGCTTTGGCCCG
GAGCCAAGCACCCCGGCTCCATCTCTGCTTCCGGCACCGGCGGGCACATC
TGCTTCCTCCGTCAACGATTCGGCGGCTCACGGACGGGACATTAGCCTCT
GGCTGCTGGGCCTCTTTCTGGCCCCGCTCCAGTTGGCAGTGACCTTTCGG
TTCGCAAGCTTTCTAAAAC

BO13758.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:10:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG6044-PA 690 CG6044-RA 1..687 17..703 3435 100 Plus
CG6044-PB 300 CG6044-RB 1..297 407..703 1485 100 Plus
CG6044-PC 300 CG6044-RC 1..297 407..703 1485 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:41:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG6044-RG 1652 CG6044-RG 230..916 17..703 3435 100 Plus
CG6044-RA 1484 CG6044-RA 230..916 17..703 3435 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:41:36
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 22407454..22407804 353..703 1755 100 Plus
2R 25286936 2R 22407040..22407325 68..353 1430 100 Plus
2R 25286936 2R 22404406..22404462 17..73 285 100 Plus
Blast to na_te.dros performed on 2015-02-11 16:41:39 has no hits.

BO13758.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:11:41 Download gff for BO13758.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6044-PA 1..690 17..706 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:00:51 Download gff for BO13758.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6044-PA 1..690 17..706 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:05:04 Download gff for BO13758.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6044-RA 227..922 14..709 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:52:36 Download gff for BO13758.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6044-RA 227..922 14..709 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:52:36 Download gff for BO13758.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 22404403..22404460 14..71 98 -> Plus
2R 22407044..22407325 72..353 100 -> Plus
2R 22407455..22407810 354..709 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:05:04 Download gff for BO13758.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 18291908..18291965 14..71 98 -> Plus
arm_2R 18294549..18294830 72..353 100 -> Plus
arm_2R 18294960..18295315 354..709 99   Plus

BO13758.complete Sequence

721 bp assembled on 2006-10-11

GenBank Submission: FJ632921

> BO13758.complete
GAAGTTATCAGTCGACATGAGGCATCTCTGGCTGCTCCTTCTTATCGCCT
GTGGATCTGTCCAGTTCCCAGGTGTGCTGACCTTGCCGGAGGCACTCCCA
GCCAAATCTTCATCGGCCGCTGGAGGCGGAAACGGAGGTGGAGCCGGGGG
AGCCGTCACTGCCCCGTCAGCAGGAGACACCAGCAAGGACTACGACTACG
AGGAGGACCAGCAGCGGGCTCCGGGAAACCTGGCCAAGTCGACCGCTGAT
CCCAAAGTTCCAGAGCCATACTTCGAGCACAGCGATGTGGATATCTATGT
GCCGCAGAACGCGACCAGCGCCAAGTTGGAGTGCCCAGTTAAAAATTATA
ATGCTGCACACCACGTCGTTCTCTGGTACAAGGAGAAGGTACAGGTATCC
AGCGGAATGAATATATTCAACCACATCTATGCCCTGGACGAGCAGTTCTC
CCTGACCGTTCCCCTGGCATCCAATGCCACCGAGGAGCGCTACGAGTGCG
AGGTACTGCCGAACAAAGTGCGACACACGGCTACCATTCGCTTTGGCCCG
GAGCCAAGCACCCCGGCTCCATCTCTGCTTCCGGCACCGGCGGGCACATC
TGCTTCCTCCGTCAACGATTCGGCGGCTCACGGACGGGACATTAGCCTCT
GGCTGCTGGGCCTCTTTCTGGCCCCGCTCCAGTTGGCAGTGACCTTTCGG
TTCGCAAGCTTTCTAGACCAT

BO13758.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:38:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG6044-RG 690 CG6044-PG 1..687 17..703 3435 100 Plus
CG6044-RA 690 CG6044-PA 1..687 17..703 3435 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:38:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG6044-RG 1652 CG6044-RG 230..916 17..703 3435 100 Plus
CG6044-RA 1484 CG6044-RA 230..916 17..703 3435 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:37:59
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 22407454..22407804 353..703 1755 100 Plus
2R 25286936 2R 22407040..22407325 68..353 1430 100 Plus
2R 25286936 2R 22404406..22404462 17..73 285 100 Plus
Blast to na_te.dros performed on 2014-11-28 00:38:00 has no hits.

BO13758.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:35:46 Download gff for BO13758.complete
Subject Subject Range Query Range Percent Splice Strand
CG6044-RA 1..690 17..706 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:51:25 Download gff for BO13758.complete
Subject Subject Range Query Range Percent Splice Strand
CG6044-RA 231..926 14..709 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:28:29 Download gff for BO13758.complete
Subject Subject Range Query Range Percent Splice Strand
CG6044-RA 230..916 17..705 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:35:47 Download gff for BO13758.complete
Subject Subject Range Query Range Percent Splice Strand
CG6044-RA 231..926 14..709 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:35:21 Download gff for BO13758.complete
Subject Subject Range Query Range Percent Splice Strand
CG6044-RA 230..916 17..705 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:35:21 Download gff for BO13758.complete
Subject Subject Range Query Range Percent Splice Strand
2R 22407455..22407804 354..705 99   Plus
2R 22407044..22407325 72..353 100 -> Plus
2R 22404406..22404460 17..71 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:28:29 Download gff for BO13758.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 18291911..18291965 17..71 100 -> Plus
arm_2R 18294549..18294830 72..353 100 -> Plus
arm_2R 18294960..18295309 354..705 99   Plus

BO13758.pep Sequence

Translation from 16 to 721

> BO13758.pep
MRHLWLLLLIACGSVQFPGVLTLPEALPAKSSSAAGGGNGGGAGGAVTAP
SAGDTSKDYDYEEDQQRAPGNLAKSTADPKVPEPYFEHSDVDIYVPQNAT
SAKLECPVKNYNAAHHVVLWYKEKVQVSSGMNIFNHIYALDEQFSLTVPL
ASNATEERYECEVLPNKVRHTATIRFGPEPSTPAPSLLPAPAGTSASSVN
DSAAHGRDISLWLLGLFLAPLQLAVTFRFASFLDH

BO13758.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:57:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG6044-PG 229 CG6044-PG 1..229 1..229 1201 100 Plus
CG6044-PA 229 CG6044-PA 1..229 1..229 1201 100 Plus