Clone Sequence Records
BO13758.3prime Sequence
614 bp (597 high quality bases) assembled on 2006-05-08
> BO13758.3prime
ATGGTCTAGAAAGCTTGCGAACCGAAAGGTCACTGCCAACTGGAGCGGGG
CCAGAAAGAGGCCCAGCAGCCAGAGGCTAATGTCCCGTCCGTGAGCCGCC
GAATCGTTGACGGAGGAAGCAGATGTGCCCGCCGGTGCCGGAAGCAGAGA
TGGAGCCGGGGTGCTTGGCTCCGGGCCAAAGCGAATGGTAGCCGTGTGTC
GCACTTTGTTCGGCAGTACCTCGCACTCGTAGCGCTCCTCGGTGGCATTG
GATGCCAGGGGAACGGTCAGGGAGAACTGCTCGTCCAGGGCATAGATGTG
GTTGAATATATTCATTCCGCTGGATACCTGTACCTTCTCCTTGTACCAGA
GAACGACGTGGTGTGCAGCATTATAATTTTTAACTGGGCACTCCAACTTG
GCGCTGGTCGCGTTCTGCGGCACATAGATATCCACATCGCTGTGCTCGAA
GTATGGCTCTGGAACTTTGGGATCAGCGGTCGACTTGGCCAGGTTTCCCG
GAGCCCGCTGCTGGTCCTCCTCGTAGTCGTAGTCCTTGCTGGTGTCTCCT
GCTGACGGGGCAGTGACGGCTCCCCCGGCTCCACCTCCGTTTCCGCCTCC
GGCGGCCGATGAAG
BO13758.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:10:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6044-PA | 690 | CG6044-RA | 92..687 | 614..19 | 2955 | 99.8 | Minus |
CG6044-PB | 300 | CG6044-RB | 1..297 | 315..19 | 1485 | 100 | Minus |
CG6044-PC | 300 | CG6044-RC | 1..297 | 315..19 | 1485 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:50:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6044-RG | 1652 | CG6044-RG | 321..916 | 614..19 | 2965 | 99.8 | Minus |
CG6044-RA | 1484 | CG6044-RA | 321..916 | 614..19 | 2965 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:50:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 22407454..22407804 | 369..19 | 1755 | 100 | Minus |
2R | 25286936 | 2R | 22407080..22407325 | 614..369 | 1215 | 99.6 | Minus |
Blast to na_te.dros performed on 2015-02-10 15:50:28 has no hits.
BO13758.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:11:40 Download gff for
BO13758.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6044-PA | 92..690 | 16..614 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:00:50 Download gff for
BO13758.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6044-PA | 92..690 | 16..614 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 23:17:09 Download gff for
BO13758.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6044-RA | 321..922 | 13..614 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:25:41 Download gff for
BO13758.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6044-RA | 321..922 | 13..614 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:25:41 Download gff for
BO13758.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 22407080..22407325 | 369..614 | 99 | -> | Minus |
2R | 22407455..22407810 | 13..368 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 23:17:09 Download gff for
BO13758.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 18294585..18294830 | 369..614 | 99 | -> | Minus |
arm_2R | 18294960..18295315 | 13..368 | 99 | | Minus |
BO13758.5prime Sequence
719 bp (669 high quality bases) assembled on 2006-05-08
> BO13758.5prime
GAAGTTATCAGTCGACATGAGGCATCTCTGGCTGCTCCTTCTTATCGCCT
GTGGATCTGTCCAGTTCCCAGGTGTGCTGACCTTGCCGGAGGCACTCCCA
GCCAAATCTTCATCGGCCGCTGGAGGCGGAAACGGAGGTGGAGCCGGGGG
AGCCGTCACTGCCCCGTCAGCAGGAGACACCAGCAAGGACTACGACTACG
AGGAGGACCAGCAGCGGGCTCCGGGAAACCTGGCCAAGTCGACCGCTGAT
CCCAAAGTTCCAGAGCCATACTTCGAGCACAGCGATGTGGATATCTATGT
GCCGCAGAACGCGACCAGCGCCAAGTTGGAGTGCCCAGTTAAAAATTATA
ATGCTGCACACCACGTCGTTCTCTGGTACAAGGAGAAGGTACAGGTATCC
AGCGGAATGAATATATTCAACCACATCTATGCCCTGGACGAGCAGTTCTC
CCTGACCGTTCCCCTGGCATCCAATGCCACCGAGGAGCGCTACGAGTGCG
AGGTACTGCCGAACAAAGTGCGACACACGGCTACCATTCGCTTTGGCCCG
GAGCCAAGCACCCCGGCTCCATCTCTGCTTCCGGCACCGGCGGGCACATC
TGCTTCCTCCGTCAACGATTCGGCGGCTCACGGACGGGACATTAGCCTCT
GGCTGCTGGGCCTCTTTCTGGCCCCGCTCCAGTTGGCAGTGACCTTTCGG
TTCGCAAGCTTTCTAAAAC
BO13758.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:10:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6044-PA | 690 | CG6044-RA | 1..687 | 17..703 | 3435 | 100 | Plus |
CG6044-PB | 300 | CG6044-RB | 1..297 | 407..703 | 1485 | 100 | Plus |
CG6044-PC | 300 | CG6044-RC | 1..297 | 407..703 | 1485 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:41:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6044-RG | 1652 | CG6044-RG | 230..916 | 17..703 | 3435 | 100 | Plus |
CG6044-RA | 1484 | CG6044-RA | 230..916 | 17..703 | 3435 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:41:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 22407454..22407804 | 353..703 | 1755 | 100 | Plus |
2R | 25286936 | 2R | 22407040..22407325 | 68..353 | 1430 | 100 | Plus |
2R | 25286936 | 2R | 22404406..22404462 | 17..73 | 285 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 16:41:39 has no hits.
BO13758.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:11:41 Download gff for
BO13758.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6044-PA | 1..690 | 17..706 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:00:51 Download gff for
BO13758.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6044-PA | 1..690 | 17..706 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:05:04 Download gff for
BO13758.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6044-RA | 227..922 | 14..709 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:52:36 Download gff for
BO13758.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6044-RA | 227..922 | 14..709 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:52:36 Download gff for
BO13758.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 22404403..22404460 | 14..71 | 98 | -> | Plus |
2R | 22407044..22407325 | 72..353 | 100 | -> | Plus |
2R | 22407455..22407810 | 354..709 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:05:04 Download gff for
BO13758.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 18291908..18291965 | 14..71 | 98 | -> | Plus |
arm_2R | 18294549..18294830 | 72..353 | 100 | -> | Plus |
arm_2R | 18294960..18295315 | 354..709 | 99 | | Plus |
BO13758.complete Sequence
721 bp assembled on 2006-10-11
GenBank Submission: FJ632921
> BO13758.complete
GAAGTTATCAGTCGACATGAGGCATCTCTGGCTGCTCCTTCTTATCGCCT
GTGGATCTGTCCAGTTCCCAGGTGTGCTGACCTTGCCGGAGGCACTCCCA
GCCAAATCTTCATCGGCCGCTGGAGGCGGAAACGGAGGTGGAGCCGGGGG
AGCCGTCACTGCCCCGTCAGCAGGAGACACCAGCAAGGACTACGACTACG
AGGAGGACCAGCAGCGGGCTCCGGGAAACCTGGCCAAGTCGACCGCTGAT
CCCAAAGTTCCAGAGCCATACTTCGAGCACAGCGATGTGGATATCTATGT
GCCGCAGAACGCGACCAGCGCCAAGTTGGAGTGCCCAGTTAAAAATTATA
ATGCTGCACACCACGTCGTTCTCTGGTACAAGGAGAAGGTACAGGTATCC
AGCGGAATGAATATATTCAACCACATCTATGCCCTGGACGAGCAGTTCTC
CCTGACCGTTCCCCTGGCATCCAATGCCACCGAGGAGCGCTACGAGTGCG
AGGTACTGCCGAACAAAGTGCGACACACGGCTACCATTCGCTTTGGCCCG
GAGCCAAGCACCCCGGCTCCATCTCTGCTTCCGGCACCGGCGGGCACATC
TGCTTCCTCCGTCAACGATTCGGCGGCTCACGGACGGGACATTAGCCTCT
GGCTGCTGGGCCTCTTTCTGGCCCCGCTCCAGTTGGCAGTGACCTTTCGG
TTCGCAAGCTTTCTAGACCAT
BO13758.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:38:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6044-RG | 690 | CG6044-PG | 1..687 | 17..703 | 3435 | 100 | Plus |
CG6044-RA | 690 | CG6044-PA | 1..687 | 17..703 | 3435 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:38:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6044-RG | 1652 | CG6044-RG | 230..916 | 17..703 | 3435 | 100 | Plus |
CG6044-RA | 1484 | CG6044-RA | 230..916 | 17..703 | 3435 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:37:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 22407454..22407804 | 353..703 | 1755 | 100 | Plus |
2R | 25286936 | 2R | 22407040..22407325 | 68..353 | 1430 | 100 | Plus |
2R | 25286936 | 2R | 22404406..22404462 | 17..73 | 285 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:38:00 has no hits.
BO13758.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:35:46 Download gff for
BO13758.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6044-RA | 1..690 | 17..706 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:51:25 Download gff for
BO13758.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6044-RA | 231..926 | 14..709 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:28:29 Download gff for
BO13758.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6044-RA | 230..916 | 17..705 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:35:47 Download gff for
BO13758.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6044-RA | 231..926 | 14..709 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:35:21 Download gff for
BO13758.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6044-RA | 230..916 | 17..705 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:35:21 Download gff for
BO13758.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 22407455..22407804 | 354..705 | 99 | | Plus |
2R | 22407044..22407325 | 72..353 | 100 | -> | Plus |
2R | 22404406..22404460 | 17..71 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:28:29 Download gff for
BO13758.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 18291911..18291965 | 17..71 | 100 | -> | Plus |
arm_2R | 18294549..18294830 | 72..353 | 100 | -> | Plus |
arm_2R | 18294960..18295309 | 354..705 | 99 | | Plus |
BO13758.pep Sequence
Translation from 16 to 721
> BO13758.pep
MRHLWLLLLIACGSVQFPGVLTLPEALPAKSSSAAGGGNGGGAGGAVTAP
SAGDTSKDYDYEEDQQRAPGNLAKSTADPKVPEPYFEHSDVDIYVPQNAT
SAKLECPVKNYNAAHHVVLWYKEKVQVSSGMNIFNHIYALDEQFSLTVPL
ASNATEERYECEVLPNKVRHTATIRFGPEPSTPAPSLLPAPAGTSASSVN
DSAAHGRDISLWLLGLFLAPLQLAVTFRFASFLDH
BO13758.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:57:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6044-PG | 229 | CG6044-PG | 1..229 | 1..229 | 1201 | 100 | Plus |
CG6044-PA | 229 | CG6044-PA | 1..229 | 1..229 | 1201 | 100 | Plus |