Clone Sequence Records
BO13760.3prime Sequence
611 bp (596 high quality bases) assembled on 2006-05-08
> BO13760.3prime
ATGGTCTAGAAAGCTTGCGGGGTGGTAGGCAACAGCGGGGGCGGCGTAGT
GGGTGGGAGCAGCATAGGTGGCATATGCAGCGGGGGCAGCATAGTGAGCC
ACTGGGGCCACAGTCTTGACCACAGCAGGAGCAGCGTAGTGGGCAACTGG
AGCCACGGTCTTGACCACAGCGGGAGCAGCGTAGTGGGCGACAGCAGGGG
CGGCGTATTGGGCAACGGGAGCGGCGACGGTCTTCACAACGGGGGCAACG
GCGACGGCCTTGACCAGGGGCTCACGGTTGACAACGGCGTTGAATCCGTT
GATGGGATCGGCGGTGTACTGGACGATCCTCTTGTAGCCGTCAGCGTCGA
TCAGGGAGTACTCTCCGCGTACCACATCTCCATCGCGCTCCTCCACCTGT
CCCTTGTTGTCACCGGTTAGCTTGTCATCGACTCCGTAGGAGAAGCGGTA
CTGGGGGTGGGGGTCGTACTCCTCGGCGGCCTTGACCACGACCTTCTGGG
CGACGGCCACGGGGGCGTGGGCGTAGGTGGCCACCGCTGGGGCAGCGTGG
TACACCTGTGGGGCGGCGATGGGGGCATAACCGGGCGCTGGCCACGGCGA
CGAAGGCGAGG
BO13760.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:10:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2360-PA | 618 | Ccp84Aa-RA | 50..615 | 584..19 | 2830 | 100 | Minus |
| CG1252-PA | 666 | Ccp84Ab-RA | 50..590 | 584..44 | 2580 | 99 | Minus |
| CG2341-PA | 600 | Ccp84Ad-RA | 235..533 | 399..101 | 1145 | 95.3 | Minus |
| CG2341-PA | 600 | Ccp84Ad-RA | 490..555 | 189..124 | 280 | 96.9 | Minus |
| CG1330-PA | 627 | Ccp84Ae-RA | 190..257 | 411..344 | 190 | 91.1 | Minus |
| CG4052-PA | 438 | CG4052-RA | 241..288 | 399..352 | 165 | 93.7 | Minus |
| CG2342-PA | 576 | Ccp84Ag-RA | 256..287 | 318..287 | 160 | 100 | Minus |
| CG2341-PA | 600 | Ccp84Ad-RA | 567..595 | 49..21 | 145 | 100 | Minus |
| CG2360-PA | 618 | Ccp84Aa-RA | 24..51 | 611..584 | 140 | 100 | Minus |
| CG1252-PA | 666 | Ccp84Ab-RA | 24..51 | 611..584 | 140 | 100 | Minus |
| CG2341-PA | 600 | Ccp84Ad-RA | 150..186 | 484..448 | 135 | 94.5 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:21:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ccp84Aa-RA | 765 | CG2360-RA | 87..678 | 611..19 | 2940 | 99.8 | Minus |
| Ccp84Ab-RA | 834 | CG1252-RA | 82..657 | 611..35 | 2755 | 98.6 | Minus |
| Ccp84Ad-RA | 735 | CG2341-RA | 136..621 | 558..79 | 1505 | 87.4 | Minus |
| Ccp84Aa-RA | 765 | CG2360-RA | 508..574 | 144..78 | 215 | 88.1 | Minus |
| Ccp84Aa-RA | 765 | CG2360-RA | 553..619 | 189..123 | 215 | 88.1 | Minus |
| Ccp84Ab-RA | 834 | CG1252-RA | 548..614 | 189..123 | 215 | 88.1 | Minus |
| Ccp84Ab-RA | 834 | CG1252-RA | 503..569 | 144..78 | 200 | 86.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 12:21:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 6704225..6704816 | 611..19 | 2915 | 99.8 | Minus |
| 3R | 32079331 | 3R | 6702145..6702720 | 35..611 | 2730 | 98.6 | Plus |
| 3R | 32079331 | 3R | 6692928..6693413 | 558..79 | 1480 | 87.4 | Minus |
| 3R | 32079331 | 3R | 6689759..6690059 | 264..558 | 465 | 77.7 | Plus |
| X | 23542271 | X | 5804927..5805179 | 506..254 | 395 | 77.1 | Minus |
| 3R | 32079331 | 3R | 6691251..6691411 | 266..426 | 385 | 82.6 | Plus |
| 3R | 32079331 | 3R | 6693348..6693413 | 189..124 | 300 | 97 | Minus |
| 3R | 32079331 | 3R | 6687163..6687299 | 399..263 | 235 | 78.1 | Minus |
| 3R | 32079331 | 3R | 6702188..6702254 | 123..189 | 215 | 88.1 | Plus |
| 3R | 32079331 | 3R | 6704646..6704712 | 144..78 | 215 | 88.1 | Minus |
| 3R | 32079331 | 3R | 6704691..6704757 | 189..123 | 215 | 88.1 | Minus |
| 3R | 32079331 | 3R | 6702233..6702299 | 78..144 | 200 | 86.6 | Plus |
| 3R | 32079331 | 3R | 6693303..6693367 | 144..80 | 190 | 86.2 | Minus |
Blast to na_te.dros performed 2015-02-12 12:21:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| R1A1-element | 5356 | R1A1-element DMRER1DM 5356bp Derived from X51968 (g8429) (Rel. 23, Last updated, Version 1). | 600..640 | 73..30 | 122 | 81.8 | Minus |
| R1A1-element | 5356 | R1A1-element DMRER1DM 5356bp Derived from X51968 (g8429) (Rel. 23, Last updated, Version 1). | 601..647 | 99..53 | 109 | 70.2 | Minus |
BO13760.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:11:45 Download gff for
BO13760.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2360-PA | 24..618 | 16..611 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:00:55 Download gff for
BO13760.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2360-PA | 24..618 | 16..611 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 01:13:52 Download gff for
BO13760.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ccp84Aa-RA | 87..678 | 19..611 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:08:55 Download gff for
BO13760.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ccp84Aa-RA | 87..678 | 19..611 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:08:55 Download gff for
BO13760.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 6702147..6702720 | 37..611 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 01:13:52 Download gff for
BO13760.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 2527869..2528442 | 37..611 | 98 | | Plus |
BO13760.complete Sequence
649 bp assembled on 2008-11-10
GenBank Submission: KX798696
> BO13760.complete
GAAGTTATCAGTCGACATGGCATTCAAGTTTGTCTTCGCCCTCGCCTTCG
TCGCCGTGGCCAGCGCCGGTTATGCCCCCATCGCCGCCCCACAGGTGTAC
CACGCTGCCCCAGCGGTGGCCACCTACGCCCACGCCCCCGTGGCCGTCGC
CCAGAAGGTCGTGGTCAAGGCCGCCGAGGAGTACGACCCCCACCCCCAGT
ACCGCTTCTCCTACGGAGTCGATGACAAGCTAACCGGTGACAACAAGGGA
CAGGTGGAGGAGCGCGATGGAGATGTGGTACGCGGAGAGTACTCCCTGAT
CGACGCTGACGGCTACAAGAGGATCGTCCAGTACACCGCCGATCCCATCA
ACGGATTCAACGCCGTTGTCAACCGTGAGCCCCTGGTCAAGGCCGTCGCC
GTTGCCCCCGTTGTGAAGACCGTCGCCGCTCCCGTTGCCCAATACGCCGC
CCCTGCTGTCGCCCACTACGCTGCTCCCGCTGTGGTCAAGACCGTGGCTC
CAGTTGCCCACTACGCTGCTCCTGCTGTGGTCAAGACTGTGGCCCCAGTG
GCTCACTATGCTGCCCCCGCTGCATATGCCACCTATGCTGCTCCCACCCA
CTACGCCGCCCCCGCTGTTGCCTACCACCCCGCAAGCTTTCTAGACCAT
BO13760.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:34:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ccp84Aa-RA | 618 | CG2360-PA | 1..615 | 17..631 | 3075 | 100 | Plus |
| Ccp84Ab-RA | 666 | CG1252-PA | 1..599 | 17..615 | 2875 | 98.7 | Plus |
| Ccp84Ad-RA | 600 | CG2341-PA | 70..555 | 92..571 | 1480 | 87.4 | Plus |
| Ccp84Aa-RA | 618 | CG2360-PA | 445..511 | 506..572 | 215 | 88.1 | Plus |
| Ccp84Aa-RA | 618 | CG2360-PA | 490..556 | 461..527 | 215 | 88.1 | Plus |
| Ccp84Ab-RA | 666 | CG1252-PA | 490..556 | 461..527 | 215 | 88.1 | Plus |
| Ccp84Ab-RA | 666 | CG1252-PA | 445..511 | 506..572 | 200 | 86.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:34:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ccp84Aa-RA | 765 | CG2360-RA | 64..678 | 17..631 | 3075 | 100 | Plus |
| Ccp84Ab-RA | 834 | CG1252-RA | 57..657 | 15..615 | 2885 | 98.7 | Plus |
| Ccp84Ad-RA | 735 | CG2341-RA | 136..621 | 92..571 | 1480 | 87.4 | Plus |
| Ccp84Aa-RA | 765 | CG2360-RA | 508..574 | 506..572 | 215 | 88.1 | Plus |
| Ccp84Aa-RA | 765 | CG2360-RA | 553..619 | 461..527 | 215 | 88.1 | Plus |
| Ccp84Ab-RA | 834 | CG1252-RA | 548..614 | 461..527 | 215 | 88.1 | Plus |
| Ccp84Ab-RA | 834 | CG1252-RA | 503..569 | 506..572 | 200 | 86.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:34:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 6704212..6704816 | 27..631 | 3025 | 100 | Plus |
| 3R | 32079331 | 3R | 6702145..6702733 | 615..27 | 2840 | 98.8 | Minus |
| 3R | 32079331 | 3R | 6692928..6693413 | 92..571 | 1480 | 87.4 | Plus |
| 3R | 32079331 | 3R | 6689759..6690059 | 386..92 | 465 | 77.7 | Minus |
| X | 23542271 | X | 5804927..5805179 | 144..396 | 395 | 77.1 | Plus |
| 3R | 32079331 | 3R | 6691251..6691411 | 384..224 | 385 | 82.6 | Minus |
| 3R | 32079331 | 3R | 6693348..6693413 | 461..526 | 300 | 97 | Plus |
| 3R | 32079331 | 3R | 6687163..6687299 | 251..387 | 235 | 78.1 | Plus |
| 3R | 32079331 | 3R | 6704691..6704757 | 461..527 | 215 | 88.1 | Plus |
| 3R | 32079331 | 3R | 6702188..6702254 | 527..461 | 215 | 88.1 | Minus |
| 3R | 32079331 | 3R | 6704646..6704712 | 506..572 | 215 | 88.1 | Plus |
| 3R | 32079331 | 3R | 6702233..6702299 | 572..506 | 200 | 86.6 | Minus |
| 3R | 32079331 | 3R | 6693303..6693367 | 506..570 | 190 | 86.2 | Plus |
Blast to na_te.dros performed 2014-11-27 07:34:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| R1A1-element | 5356 | R1A1-element DMRER1DM 5356bp Derived from X51968 (g8429) (Rel. 23, Last updated, Version 1). | 600..640 | 577..620 | 122 | 81.8 | Plus |
| R1A1-element | 5356 | R1A1-element DMRER1DM 5356bp Derived from X51968 (g8429) (Rel. 23, Last updated, Version 1). | 601..647 | 551..597 | 109 | 70.2 | Plus |
BO13760.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:16:18 Download gff for
BO13760.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ccp84Aa-RA | 66..680 | 17..631 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:18:17 Download gff for
BO13760.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ccp84Aa-RA | 64..678 | 17..633 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 17:58:24 Download gff for
BO13760.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ccp84Aa-RA | 66..680 | 17..633 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:13:20 Download gff for
BO13760.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ccp84Aa-RA | 64..678 | 17..633 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:13:20 Download gff for
BO13760.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 6704212..6704816 | 27..633 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:18:17 Download gff for
BO13760.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 2529934..2530538 | 27..633 | 99 | | Plus |
BO13760.pep Sequence
Translation from 16 to 649
> BO13760.pep
MAFKFVFALAFVAVASAGYAPIAAPQVYHAAPAVATYAHAPVAVAQKVVV
KAAEEYDPHPQYRFSYGVDDKLTGDNKGQVEERDGDVVRGEYSLIDADGY
KRIVQYTADPINGFNAVVNREPLVKAVAVAPVVKTVAAPVAQYAAPAVAH
YAAPAVVKTVAPVAHYAAPAVVKTVAPVAHYAAPAAYATYAAPTHYAAPA
VAYHPASFLDH
BO13760.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:09:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ccp84Aa-PA | 205 | CG2360-PA | 1..205 | 1..205 | 1050 | 100 | Plus |
| Ccp84Ab-PA | 221 | CG1252-PA | 1..207 | 1..207 | 1018 | 97.1 | Plus |
| Ccp84Ad-PA | 199 | CG2341-PA | 1..198 | 1..204 | 824 | 81.6 | Plus |
| Ccp84Af-PA | 151 | CG1331-PA | 1..147 | 1..151 | 491 | 69.3 | Plus |
| Cpr5C-PA | 145 | CG4052-PA | 1..142 | 1..145 | 459 | 65.8 | Plus |
