Clone BO13764 Report

Search the DGRC for BO13764

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:137
Well:64
Vector:pDNR-Dual
Associated Gene/TranscriptCG33178-RA
Protein status:BO13764.pep: validated full length
Sequenced Size:529

Clone Sequence Records

BO13764.3prime Sequence

527 bp (526 high quality bases) assembled on 2006-05-08

> BO13764.3prime
ATGGTCTAGAAAGCTTGCTATAAAGCTTAGGGTACGCAGGGCGACCACGG
CGGCCATGTAGAAGGTGATCAGTAGCATGGTGGCGAAGGCTAGAATCCTC
GATGGCTGCGGCACCGGATAAACGGCGTAAACCAGAGTGTGTATGATCCT
GGCCACGGAGGCCACTCGGAACAGTATGCAGGCCACATCGGCATTCGGAT
TGGTACTGATATAAATCAAGGACATGATAAAATACGGCAGAATGTTCTCC
ATGTCATTGCGATGGGCCCTTCTGACCCGCTCCACATGCGGATCATCGAA
TTGCACTTCAAGATTCTTGAAGAACAGATCCTCCTGGTTGGGAAAGATCT
TATACCGGAAACGCTGAACGGCCGTTAGCAGCGACATGAGCAGCATCTTC
ACCACCAGGACTGTGGACCAAAAAAGATAGCAGCAAAAGACAGGATTCTC
CAGGGTAAACATATCGCCGGGCGATGTCATCATCTTGCTGGAATTACTAG
CTGCGGCCGACATGTCGACTGATAACT

BO13764.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:10:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG33178-PA 498 CG33178-RA 1..495 513..19 2475 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:16:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG33178-RC 825 CG33178-RC 50..545 514..19 2480 100 Minus
CG33178-RA 585 CG33178-RA 50..545 514..19 2480 100 Minus
CG33178-RB 621 CG33178-RB 251..581 349..19 1655 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:16:22
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 15083486..15083737 270..19 1260 100 Minus
X 23542271 X 15082876..15083041 514..349 830 100 Minus
X 23542271 X 15083255..15083337 350..268 415 100 Minus
Blast to na_te.dros performed on 2015-02-10 21:16:26 has no hits.

BO13764.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:11:50 Download gff for BO13764.3prime
Subject Subject Range Query Range Percent Splice Strand
CG33178-PA 1..498 16..513 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:01:03 Download gff for BO13764.3prime
Subject Subject Range Query Range Percent Splice Strand
CG33178-PA 1..498 16..513 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:20:18 Download gff for BO13764.3prime
Subject Subject Range Query Range Percent Splice Strand
CG33178-RA 43..549 15..521 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:36:54 Download gff for BO13764.3prime
Subject Subject Range Query Range Percent Splice Strand
CG33178-RA 43..549 15..521 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:36:54 Download gff for BO13764.3prime
Subject Subject Range Query Range Percent Splice Strand
X 15082869..15083041 349..521 98 -> Minus
X 15083257..15083336 269..348 100 -> Minus
X 15083488..15083741 15..268 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:20:18 Download gff for BO13764.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 14976902..14977074 349..521 98 -> Minus
arm_X 14977290..14977369 269..348 100 -> Minus
arm_X 14977521..14977774 15..268 99   Minus

BO13764.5prime Sequence

527 bp (526 high quality bases) assembled on 2006-05-08

> BO13764.5prime
GAAGTTATCAGTCGACATGTCGGCCGCAGCTAGTAATTCCAGCAAGATGA
TGACATCGCCCGGCGATATGTTTACCCTGGAGAATCCTGTCTTTTGCTGC
TATCTTTTTTGGTCCACAGTCCTGGTGGTGAAGATGCTGCTCATGTCGCT
GCTAACGGCCGTTCAGCGTTTCCGGTATAAGATCTTTCCCAACCAGGAGG
ATCTGTTCTTCAAGAATCTTGAAGTGCAATTCGATGATCCGCATGTGGAG
CGGGTCAGAAGGGCCCATCGCAATGACATGGAGAACATTCTGCCGTATTT
TATCATGTCCTTGATTTATATCAGTACCAATCCGAATGCCGATGTGGCCT
GCATACTGTTCCGAGTGGCCTCCGTGGCCAGGATCATACACACTCTGGTT
TACGCCGTTTATCCGGTGCCGCAGCCATCGAGGATTCTAGCCTTCGCCAC
CATGCTACTGATCACCTTCTACATGGCCGCCGTGGTCGCCCTGCGTACCC
TAAGCTTTATAGCAAGCTTTCTAGACC

BO13764.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:10:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG33178-PA 498 CG33178-RA 1..495 17..511 2475 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 09:25:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG33178-RC 825 CG33178-RC 50..545 16..511 2480 100 Plus
CG33178-RA 585 CG33178-RA 50..545 16..511 2480 100 Plus
CG33178-RB 621 CG33178-RB 251..581 181..511 1655 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 09:25:40
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 15083486..15083737 260..511 1260 100 Plus
X 23542271 X 15082876..15083041 16..181 830 100 Plus
X 23542271 X 15083255..15083337 180..262 415 100 Plus
Blast to na_te.dros performed on 2015-02-02 09:25:44 has no hits.

BO13764.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:11:51 Download gff for BO13764.5prime
Subject Subject Range Query Range Percent Splice Strand
CG33178-PA 1..498 17..514 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:01:04 Download gff for BO13764.5prime
Subject Subject Range Query Range Percent Splice Strand
CG33178-PA 1..498 17..514 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 03:54:00 Download gff for BO13764.5prime
Subject Subject Range Query Range Percent Splice Strand
CG33178-RA 43..549 9..515 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:14:44 Download gff for BO13764.5prime
Subject Subject Range Query Range Percent Splice Strand
CG33178-RA 43..549 9..515 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 12:14:44 Download gff for BO13764.5prime
Subject Subject Range Query Range Percent Splice Strand
X 15082869..15083041 9..181 98 -> Plus
X 15083257..15083336 182..261 100 -> Plus
X 15083488..15083741 262..515 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 03:54:00 Download gff for BO13764.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 14976902..14977074 9..181 98 -> Plus
arm_X 14977290..14977369 182..261 100 -> Plus
arm_X 14977521..14977774 262..515 99   Plus

BO13764.complete Sequence

529 bp assembled on 2006-10-11

GenBank Submission: FJ632922

> BO13764.complete
GAAGTTATCAGTCGACATGTCGGCCGCAGCTAGTAATTCCAGCAAGATGA
TGACATCGCCCGGCGATATGTTTACCCTGGAGAATCCTGTCTTTTGCTGC
TATCTTTTTTGGTCCACAGTCCTGGTGGTGAAGATGCTGCTCATGTCGCT
GCTAACGGCCGTTCAGCGTTTCCGGTATAAGATCTTTCCCAACCAGGAGG
ATCTGTTCTTCAAGAATCTTGAAGTGCAATTCGATGATCCGCATGTGGAG
CGGGTCAGAAGGGCCCATCGCAATGACATGGAGAACATTCTGCCGTATTT
TATCATGTCCTTGATTTATATCAGTACCAATCCGAATGCCGATGTGGCCT
GCATACTGTTCCGAGTGGCCTCCGTGGCCAGGATCATACACACTCTGGTT
TACGCCGTTTATCCGGTGCCGCAGCCATCGAGGATTCTAGCCTTCGCCAC
CATGCTACTGATCACCTTCTACATGGCCGCCGTGGTCGCCCTGCGTACCC
TAAGCTTTATAGCAAGCTTTCTAGACCAT

BO13764.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:01:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG33178-RC 498 CG33178-PC 1..495 17..511 2475 100 Plus
CG33178-RA 498 CG33178-PA 1..495 17..511 2475 100 Plus
CG33178-RB 534 CG33178-PB 201..531 181..511 1655 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:01:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG33178-RC 825 CG33178-RC 50..545 16..511 2480 100 Plus
CG33178-RA 585 CG33178-RA 50..545 16..511 2480 100 Plus
CG33178-RB 621 CG33178-RB 251..581 181..511 1655 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:01:03
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 15083486..15083737 260..511 1260 100 Plus
X 23542271 X 15082876..15083041 16..181 830 100 Plus
X 23542271 X 15083255..15083337 180..262 415 100 Plus
Blast to na_te.dros performed on 2014-11-28 01:01:05 has no hits.

BO13764.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:07:41 Download gff for BO13764.complete
Subject Subject Range Query Range Percent Splice Strand
CG33178-RA 1..498 17..514 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:23:58 Download gff for BO13764.complete
Subject Subject Range Query Range Percent Splice Strand
CG33178-RA 43..549 9..515 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:36:33 Download gff for BO13764.complete
Subject Subject Range Query Range Percent Splice Strand
CG33178-RA 51..545 17..513 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:07:41 Download gff for BO13764.complete
Subject Subject Range Query Range Percent Splice Strand
CG33178-RA 43..549 9..515 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:42:26 Download gff for BO13764.complete
Subject Subject Range Query Range Percent Splice Strand
CG33178-RA 51..545 17..513 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:42:26 Download gff for BO13764.complete
Subject Subject Range Query Range Percent Splice Strand
X 15082877..15083041 17..181 100 -> Plus
X 15083257..15083336 182..261 100 -> Plus
X 15083488..15083737 262..513 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:36:33 Download gff for BO13764.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 14976910..14977074 17..181 100 -> Plus
arm_X 14977290..14977369 182..261 100 -> Plus
arm_X 14977521..14977770 262..513 99   Plus

BO13764.pep Sequence

Translation from 16 to 529

> BO13764.pep
MSAAASNSSKMMTSPGDMFTLENPVFCCYLFWSTVLVVKMLLMSLLTAVQ
RFRYKIFPNQEDLFFKNLEVQFDDPHVERVRRAHRNDMENILPYFIMSLI
YISTNPNADVACILFRVASVARIIHTLVYAVYPVPQPSRILAFATMLLIT
FYMAAVVALRTLSFIASFLDH

BO13764.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:01:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG33178-PC 165 CG33178-PC 1..165 1..165 840 100 Plus
CG33178-PA 165 CG33178-PA 1..165 1..165 840 100 Plus
CG33178-PB 177 CG33178-PB 1..177 1..165 817 93.2 Plus
Mgstl-PA 152 CG1742-PA 1..146 12..157 446 61 Plus
CG33177-PA 167 CG33177-PA 19..167 18..165 405 52.3 Plus