Clone Sequence Records
BO13764.3prime Sequence
527 bp (526 high quality bases) assembled on 2006-05-08
> BO13764.3prime
ATGGTCTAGAAAGCTTGCTATAAAGCTTAGGGTACGCAGGGCGACCACGG
CGGCCATGTAGAAGGTGATCAGTAGCATGGTGGCGAAGGCTAGAATCCTC
GATGGCTGCGGCACCGGATAAACGGCGTAAACCAGAGTGTGTATGATCCT
GGCCACGGAGGCCACTCGGAACAGTATGCAGGCCACATCGGCATTCGGAT
TGGTACTGATATAAATCAAGGACATGATAAAATACGGCAGAATGTTCTCC
ATGTCATTGCGATGGGCCCTTCTGACCCGCTCCACATGCGGATCATCGAA
TTGCACTTCAAGATTCTTGAAGAACAGATCCTCCTGGTTGGGAAAGATCT
TATACCGGAAACGCTGAACGGCCGTTAGCAGCGACATGAGCAGCATCTTC
ACCACCAGGACTGTGGACCAAAAAAGATAGCAGCAAAAGACAGGATTCTC
CAGGGTAAACATATCGCCGGGCGATGTCATCATCTTGCTGGAATTACTAG
CTGCGGCCGACATGTCGACTGATAACT
BO13764.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:10:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33178-PA | 498 | CG33178-RA | 1..495 | 513..19 | 2475 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:16:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33178-RC | 825 | CG33178-RC | 50..545 | 514..19 | 2480 | 100 | Minus |
CG33178-RA | 585 | CG33178-RA | 50..545 | 514..19 | 2480 | 100 | Minus |
CG33178-RB | 621 | CG33178-RB | 251..581 | 349..19 | 1655 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:16:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 15083486..15083737 | 270..19 | 1260 | 100 | Minus |
X | 23542271 | X | 15082876..15083041 | 514..349 | 830 | 100 | Minus |
X | 23542271 | X | 15083255..15083337 | 350..268 | 415 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 21:16:26 has no hits.
BO13764.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:11:50 Download gff for
BO13764.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33178-PA | 1..498 | 16..513 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:01:03 Download gff for
BO13764.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33178-PA | 1..498 | 16..513 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:20:18 Download gff for
BO13764.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33178-RA | 43..549 | 15..521 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:36:54 Download gff for
BO13764.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33178-RA | 43..549 | 15..521 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:36:54 Download gff for
BO13764.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 15082869..15083041 | 349..521 | 98 | -> | Minus |
X | 15083257..15083336 | 269..348 | 100 | -> | Minus |
X | 15083488..15083741 | 15..268 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:20:18 Download gff for
BO13764.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 14976902..14977074 | 349..521 | 98 | -> | Minus |
arm_X | 14977290..14977369 | 269..348 | 100 | -> | Minus |
arm_X | 14977521..14977774 | 15..268 | 99 | | Minus |
BO13764.5prime Sequence
527 bp (526 high quality bases) assembled on 2006-05-08
> BO13764.5prime
GAAGTTATCAGTCGACATGTCGGCCGCAGCTAGTAATTCCAGCAAGATGA
TGACATCGCCCGGCGATATGTTTACCCTGGAGAATCCTGTCTTTTGCTGC
TATCTTTTTTGGTCCACAGTCCTGGTGGTGAAGATGCTGCTCATGTCGCT
GCTAACGGCCGTTCAGCGTTTCCGGTATAAGATCTTTCCCAACCAGGAGG
ATCTGTTCTTCAAGAATCTTGAAGTGCAATTCGATGATCCGCATGTGGAG
CGGGTCAGAAGGGCCCATCGCAATGACATGGAGAACATTCTGCCGTATTT
TATCATGTCCTTGATTTATATCAGTACCAATCCGAATGCCGATGTGGCCT
GCATACTGTTCCGAGTGGCCTCCGTGGCCAGGATCATACACACTCTGGTT
TACGCCGTTTATCCGGTGCCGCAGCCATCGAGGATTCTAGCCTTCGCCAC
CATGCTACTGATCACCTTCTACATGGCCGCCGTGGTCGCCCTGCGTACCC
TAAGCTTTATAGCAAGCTTTCTAGACC
BO13764.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:10:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33178-PA | 498 | CG33178-RA | 1..495 | 17..511 | 2475 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 09:25:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33178-RC | 825 | CG33178-RC | 50..545 | 16..511 | 2480 | 100 | Plus |
CG33178-RA | 585 | CG33178-RA | 50..545 | 16..511 | 2480 | 100 | Plus |
CG33178-RB | 621 | CG33178-RB | 251..581 | 181..511 | 1655 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 09:25:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 15083486..15083737 | 260..511 | 1260 | 100 | Plus |
X | 23542271 | X | 15082876..15083041 | 16..181 | 830 | 100 | Plus |
X | 23542271 | X | 15083255..15083337 | 180..262 | 415 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-02 09:25:44 has no hits.
BO13764.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:11:51 Download gff for
BO13764.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33178-PA | 1..498 | 17..514 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:01:04 Download gff for
BO13764.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33178-PA | 1..498 | 17..514 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 03:54:00 Download gff for
BO13764.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33178-RA | 43..549 | 9..515 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:14:44 Download gff for
BO13764.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33178-RA | 43..549 | 9..515 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 12:14:44 Download gff for
BO13764.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 15082869..15083041 | 9..181 | 98 | -> | Plus |
X | 15083257..15083336 | 182..261 | 100 | -> | Plus |
X | 15083488..15083741 | 262..515 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 03:54:00 Download gff for
BO13764.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 14976902..14977074 | 9..181 | 98 | -> | Plus |
arm_X | 14977290..14977369 | 182..261 | 100 | -> | Plus |
arm_X | 14977521..14977774 | 262..515 | 99 | | Plus |
BO13764.complete Sequence
529 bp assembled on 2006-10-11
GenBank Submission: FJ632922
> BO13764.complete
GAAGTTATCAGTCGACATGTCGGCCGCAGCTAGTAATTCCAGCAAGATGA
TGACATCGCCCGGCGATATGTTTACCCTGGAGAATCCTGTCTTTTGCTGC
TATCTTTTTTGGTCCACAGTCCTGGTGGTGAAGATGCTGCTCATGTCGCT
GCTAACGGCCGTTCAGCGTTTCCGGTATAAGATCTTTCCCAACCAGGAGG
ATCTGTTCTTCAAGAATCTTGAAGTGCAATTCGATGATCCGCATGTGGAG
CGGGTCAGAAGGGCCCATCGCAATGACATGGAGAACATTCTGCCGTATTT
TATCATGTCCTTGATTTATATCAGTACCAATCCGAATGCCGATGTGGCCT
GCATACTGTTCCGAGTGGCCTCCGTGGCCAGGATCATACACACTCTGGTT
TACGCCGTTTATCCGGTGCCGCAGCCATCGAGGATTCTAGCCTTCGCCAC
CATGCTACTGATCACCTTCTACATGGCCGCCGTGGTCGCCCTGCGTACCC
TAAGCTTTATAGCAAGCTTTCTAGACCAT
BO13764.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:01:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33178-RC | 498 | CG33178-PC | 1..495 | 17..511 | 2475 | 100 | Plus |
CG33178-RA | 498 | CG33178-PA | 1..495 | 17..511 | 2475 | 100 | Plus |
CG33178-RB | 534 | CG33178-PB | 201..531 | 181..511 | 1655 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:01:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33178-RC | 825 | CG33178-RC | 50..545 | 16..511 | 2480 | 100 | Plus |
CG33178-RA | 585 | CG33178-RA | 50..545 | 16..511 | 2480 | 100 | Plus |
CG33178-RB | 621 | CG33178-RB | 251..581 | 181..511 | 1655 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:01:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 15083486..15083737 | 260..511 | 1260 | 100 | Plus |
X | 23542271 | X | 15082876..15083041 | 16..181 | 830 | 100 | Plus |
X | 23542271 | X | 15083255..15083337 | 180..262 | 415 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 01:01:05 has no hits.
BO13764.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:07:41 Download gff for
BO13764.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33178-RA | 1..498 | 17..514 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:23:58 Download gff for
BO13764.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33178-RA | 43..549 | 9..515 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:36:33 Download gff for
BO13764.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33178-RA | 51..545 | 17..513 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:07:41 Download gff for
BO13764.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33178-RA | 43..549 | 9..515 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:42:26 Download gff for
BO13764.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33178-RA | 51..545 | 17..513 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:42:26 Download gff for
BO13764.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 15082877..15083041 | 17..181 | 100 | -> | Plus |
X | 15083257..15083336 | 182..261 | 100 | -> | Plus |
X | 15083488..15083737 | 262..513 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:36:33 Download gff for
BO13764.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 14976910..14977074 | 17..181 | 100 | -> | Plus |
arm_X | 14977290..14977369 | 182..261 | 100 | -> | Plus |
arm_X | 14977521..14977770 | 262..513 | 99 | | Plus |
BO13764.pep Sequence
Translation from 16 to 529
> BO13764.pep
MSAAASNSSKMMTSPGDMFTLENPVFCCYLFWSTVLVVKMLLMSLLTAVQ
RFRYKIFPNQEDLFFKNLEVQFDDPHVERVRRAHRNDMENILPYFIMSLI
YISTNPNADVACILFRVASVARIIHTLVYAVYPVPQPSRILAFATMLLIT
FYMAAVVALRTLSFIASFLDH
BO13764.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:01:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33178-PC | 165 | CG33178-PC | 1..165 | 1..165 | 840 | 100 | Plus |
CG33178-PA | 165 | CG33178-PA | 1..165 | 1..165 | 840 | 100 | Plus |
CG33178-PB | 177 | CG33178-PB | 1..177 | 1..165 | 817 | 93.2 | Plus |
Mgstl-PA | 152 | CG1742-PA | 1..146 | 12..157 | 446 | 61 | Plus |
CG33177-PA | 167 | CG33177-PA | 19..167 | 18..165 | 405 | 52.3 | Plus |