Clone Sequence Records
BO13771.3prime Sequence
734 bp (722 high quality bases) assembled on 2006-05-08
> BO13771.3prime
ATGGTCTAGAAAGCTTGCATGGGGACCGCCGCCACTGGGCTCCTGCTGCT
TGAGCGTCTTGAGGTTCTTTTCGAAGCGCTCAAACTCGCTCTCGATCATC
CTGTCCGCCTCGTCGAAGACCTGCTCAACGGACTCCACCTCCGGTATGTA
GAATTGCAGCATGTTCTGCACTCCGTTCTTCAGCGTCACAATGGAGCTGG
GACAGGAGGAGCAGGAGCCTTGCATCTTTAGCTTGACCACGCCGCCCTCG
TAGCCCATGAAGACGATGTCGCCGCCGTCCTCCTGGACGGTGGGTCGGAT
GCGCGTGTCCAGCAGCTCCTTGATCATCATTACCGTCTCGTCGTCGTCCT
CGAGGATCTCGGTGTCCGCATTGGGCTGGGCATCGTTGAGAACTGGTAAG
CCGCTGGCAAAGAAGTCCATTATGACGGCAAACACCTCTGGCTTAATCAG
GCTCCACTCGGCGCCCTCCTGCTTCGAGATGGTGACGAAGTCGGCGCCAA
AGAACACGCCCTTAACGCCCTCCACGCGGAACAGCAATTTGGCCAAAGGA
CTGTTGTGGGCGGTGGTTCCGTTGGGGAAGTCGTACGTGTTCCCCTTTCC
CAGGACGTCCACGCCCGGGCAGGAACTTCAAGCTCTCCGGATTCGGAGTG
TCCTGCGTCTGGATGAACATGCTCCTCCTGCACGCCACCGGCATCCGCAA
CTCTAGCAACCCGCATCCCCACTGAATGACCACA
BO13771.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:10:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32500-PA | 852 | CG32500-RA | 253..849 | 615..19 | 2985 | 100 | Minus |
| CG33502-PA | 852 | CG33502-RA | 253..849 | 615..19 | 2985 | 100 | Minus |
| CG32857-PA | 852 | CG32857-RA | 253..849 | 615..19 | 2985 | 100 | Minus |
| CG32500-PA | 852 | CG32500-RA | 150..254 | 719..615 | 500 | 99 | Minus |
| CG33502-PA | 852 | CG33502-RA | 150..254 | 719..615 | 500 | 99 | Minus |
| CG32857-PA | 852 | CG32857-RA | 150..254 | 719..615 | 500 | 99 | Minus |
| CG32500-PB | 333 | CG32500-RB | 150..254 | 719..615 | 500 | 99 | Minus |
| CG32500-PB | 333 | CG32500-RB | 253..325 | 615..543 | 365 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 12:30:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33502-RA | 1060 | CG33502-RA | 193..906 | 734..19 | 3500 | 99.4 | Minus |
| CG32857-RA | 1059 | CG32857-RA | 192..905 | 734..19 | 3500 | 99.4 | Minus |
| CG32500-RA | 1084 | CG32500-RA | 217..930 | 734..19 | 3500 | 99.4 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 12:30:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 21609511..21610035 | 19..543 | 2625 | 100 | Plus |
| X | 23542271 | X | 21615603..21616127 | 19..543 | 2625 | 100 | Plus |
| X | 23542271 | X | 21621695..21622219 | 19..543 | 2625 | 100 | Plus |
| X | 23542271 | X | 21611086..21611275 | 543..734 | 830 | 97.9 | Plus |
| X | 23542271 | X | 21617178..21617367 | 543..734 | 830 | 97.9 | Plus |
| X | 23542271 | X | 21623286..21623475 | 543..734 | 830 | 97.9 | Plus |
Blast to na_te.dros performed on 2015-02-08 12:30:05 has no hits.
BO13771.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:12:02 Download gff for
BO13771.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33502-PA | 137..852 | 18..733 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:01:19 Download gff for
BO13771.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33502-PA | 137..852 | 18..733 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:37:53 Download gff for
BO13771.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32500-RA | 218..930 | 19..733 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 15:21:48 Download gff for
BO13771.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32500-RA | 218..930 | 19..733 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 15:21:48 Download gff for
BO13771.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 21609511..21610034 | 19..542 | 100 | <- | Plus |
| X | 21611086..21611274 | 543..733 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:37:53 Download gff for
BO13771.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 21480538..21481061 | 19..542 | 100 | <- | Plus |
| arm_X | 21482113..21482301 | 543..733 | 97 | | Plus |
BO13771.5prime Sequence
701 bp (633 high quality bases) assembled on 2006-05-08
> BO13771.5prime
GAAGTTATCAGTCGACATGTCGAAATTTCTGTCCCAAGCCGCCCTAAATA
CGCTGCGAAACACGCGCCTGGGGTCGCGGCAACTGGTGCGCAGTTTTAAG
GGCATCTCCAACACGCGTAACCATCGCATACCGGCTCACCAGGAATCGGG
ATGTGGTCACTCAGTGGGATGCGGGCTGCTAGAGTTGCGGATGCCGGTGG
CGTGCAGGAGGAGCATGTTCATCCAGACGCAGGACACTCCGAATCCGGAG
AGCTTGAAGTTCCTGCCCGGCGTGGACGTCCTGGGAAAGGGGAACACGTA
CGACTTCCCCAACGGAACCACCGCCCACAACAGTCCTTTGGCCAAATTGC
TGTTCCGCGTGGAGGGCGTTAAGGGCGTGTTCTTTGGCGCCGACTTCGTC
ACCATCTCGAAGCAGGAGGGCGCCGAGTGGAGCCTGATTAAGCCAGAGGT
GTTTGCCGTCATAATGGACTTCTTTGCCAGCGGCTTACCAGTTCTCAACG
ATGCCCAGCCCAATGCGGACACCGAGATCCTCGAGGACGACGACGAGACG
GTAATGATGATCAAGGAGCTGCTGGACACGCGCATCCCGACCCACCGTCC
AGGAGGACGGCGGCGACATCGTCTTCATGGGCTACGAGGGCGGCGTGGTC
AAGCTAAAGATGCAAGGCTCCTTGCTCCTCCTGTCCCAGCTCCATTGTGA
C
BO13771.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:10:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32500-PA | 852 | CG32500-RA | 1..571 | 17..587 | 2855 | 100 | Plus |
| CG33502-PA | 852 | CG33502-RA | 1..571 | 17..587 | 2855 | 100 | Plus |
| CG32857-PA | 852 | CG32857-RA | 1..571 | 17..587 | 2855 | 100 | Plus |
| CG32500-PB | 333 | CG32500-RB | 1..325 | 17..341 | 1625 | 100 | Plus |
| CG32500-PA | 852 | CG32500-RA | 570..655 | 587..672 | 430 | 100 | Plus |
| CG33502-PA | 852 | CG33502-RA | 570..655 | 587..672 | 430 | 100 | Plus |
| CG32857-PA | 852 | CG32857-RA | 570..655 | 587..672 | 430 | 100 | Plus |
| CG32500-PA | 852 | CG32500-RA | 655..683 | 673..701 | 145 | 100 | Plus |
| CG33502-PA | 852 | CG33502-RA | 655..683 | 673..701 | 145 | 100 | Plus |
| CG32857-PA | 852 | CG32857-RA | 655..683 | 673..701 | 145 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:13:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33502-RA | 1060 | CG33502-RA | 58..740 | 17..701 | 3375 | 99.7 | Plus |
| CG32857-RA | 1059 | CG32857-RA | 57..739 | 17..701 | 3375 | 99.7 | Plus |
| CG32500-RA | 1084 | CG32500-RA | 82..764 | 17..701 | 3375 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 08:13:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 21609677..21610035 | 701..341 | 1705 | 99.4 | Minus |
| X | 23542271 | X | 21615769..21616127 | 701..341 | 1705 | 99.4 | Minus |
| X | 23542271 | X | 21621861..21622219 | 701..341 | 1705 | 99.4 | Minus |
| X | 23542271 | X | 21611086..21611342 | 341..85 | 1285 | 100 | Minus |
| X | 23542271 | X | 21617178..21617434 | 341..85 | 1285 | 100 | Minus |
| X | 23542271 | X | 21623286..21623542 | 341..85 | 1285 | 100 | Minus |
| X | 23542271 | X | 21611401..21611469 | 85..17 | 345 | 100 | Minus |
| X | 23542271 | X | 21617493..21617561 | 85..17 | 345 | 100 | Minus |
| X | 23542271 | X | 21623601..21623669 | 85..17 | 345 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 08:13:39 has no hits.
BO13771.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:12:03 Download gff for
BO13771.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33502-PA | 1..683 | 17..701 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:01:21 Download gff for
BO13771.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33502-PA | 1..683 | 17..701 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 09:36:07 Download gff for
BO13771.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32500-RA | 82..764 | 17..701 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:16:47 Download gff for
BO13771.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32500-RA | 82..764 | 17..701 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:16:47 Download gff for
BO13771.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 21609677..21610034 | 342..701 | 99 | <- | Minus |
| X | 21611086..21611342 | 85..341 | 100 | <- | Minus |
| X | 21611402..21611469 | 17..84 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 09:36:07 Download gff for
BO13771.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 21480704..21481061 | 342..701 | 99 | <- | Minus |
| arm_X | 21482113..21482369 | 85..341 | 100 | <- | Minus |
| arm_X | 21482429..21482496 | 17..84 | 100 | | Minus |
BO13771.complete Sequence
883 bp assembled on 2006-10-11
GenBank Submission: FJ632923
> BO13771.complete
GAAGTTATCAGTCGACATGTCGAAATTTCTGTCCCAAGCCGCCCTAAATA
CGCTGCGAAACACGCGCCTGGGGTCGCGGCAACTGGTGCGCAGTTTTAAG
GGCATCTCCAACACGCGTAACCATCGCATACCGGCTCACCAGGAATCGGG
ATGTGGTCACTCAGTGGGATGCGGGCTGCTAGAGTTGCGGATGCCGGTGG
CGTGCAGGAGGAGCATGTTCATCCAGACGCAGGACACTCCGAATCCGGAG
AGCTTGAAGTTCCTGCCCGGCGTGGACGTCCTGGGAAAGGGGAACACGTA
CGACTTCCCCAACGGAACCACCGCCCACAACAGTCCTTTGGCCAAATTGC
TGTTCCGCGTGGAGGGCGTTAAGGGCGTGTTCTTTGGCGCCGACTTCGTC
ACCATCTCGAAGCAGGAGGGCGCCGAGTGGAGCCTGATTAAGCCAGAGGT
GTTTGCCGTCATAATGGACTTCTTTGCCAGCGGCTTACCAGTTCTCAACG
ATGCCCAGCCCAATGCGGACACCGAGATCCTCGAGGACGACGACGAGACG
GTAATGATGATCAAGGAGCTGCTGGACACGCGCATCCGACCCACCGTCCA
GGAGGACGGCGGCGACATCGTCTTCATGGGCTACGAGGGCGGCGTGGTCA
AGCTAAAGATGCAAGGCTCCTGCTCCTCCTGTCCCAGCTCCATTGTGACG
CTGAAGAACGGAGTGCAGAACATGCTGCAATTCTACATACCGGAGGTGGA
GTCCGTTGAGCAGGTCTTCGACGAGGCGGACAGGATGATCGAGAGCGAGT
TTGAGCGCTTCGAAAAGAACCTCAAGACGCTCAAGCAGCAGGAGCCCAGT
GGCGGCGGTCCCCATGCAAGCTTTCTAGACCAT
BO13771.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:40:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33502-RA | 852 | CG33502-PA | 1..849 | 17..865 | 4245 | 100 | Plus |
| CG32857-RA | 852 | CG32857-PA | 1..849 | 17..865 | 4245 | 100 | Plus |
| CG32500-RA | 852 | CG32500-PA | 1..849 | 17..865 | 4245 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:40:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33502-RA | 1060 | CG33502-RA | 58..906 | 17..865 | 4245 | 100 | Plus |
| CG32857-RA | 1059 | CG32857-RA | 57..905 | 17..865 | 4245 | 100 | Plus |
| CG32500-RA | 1084 | CG32500-RA | 82..930 | 17..865 | 4245 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:40:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 21609511..21610035 | 865..341 | 2625 | 100 | Minus |
| X | 23542271 | X | 21615603..21616127 | 865..341 | 2625 | 100 | Minus |
| X | 23542271 | X | 21621695..21622219 | 865..341 | 2625 | 100 | Minus |
| X | 23542271 | X | 21611086..21611342 | 341..85 | 1285 | 100 | Minus |
| X | 23542271 | X | 21617178..21617434 | 341..85 | 1285 | 100 | Minus |
| X | 23542271 | X | 21623286..21623542 | 341..85 | 1285 | 100 | Minus |
| X | 23542271 | X | 21611401..21611469 | 85..17 | 345 | 100 | Minus |
| X | 23542271 | X | 21617493..21617561 | 85..17 | 345 | 100 | Minus |
| X | 23542271 | X | 21623601..21623669 | 85..17 | 345 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:40:12 has no hits.
BO13771.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:44:52 Download gff for
BO13771.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33502-RA | 1..852 | 17..866 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:58:49 Download gff for
BO13771.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32857-RA | 36..884 | 17..865 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:49:00 Download gff for
BO13771.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32500-RA | 82..930 | 17..867 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:44:52 Download gff for
BO13771.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32857-RA | 36..884 | 17..865 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:16:25 Download gff for
BO13771.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32500-RA | 82..930 | 17..867 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:16:25 Download gff for
BO13771.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 21609509..21610034 | 342..867 | 99 | <- | Minus |
| X | 21611086..21611342 | 85..341 | 100 | <- | Minus |
| X | 21611402..21611469 | 17..84 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:49:00 Download gff for
BO13771.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 21480536..21481061 | 342..867 | 99 | <- | Minus |
| arm_X | 21482113..21482369 | 85..341 | 100 | <- | Minus |
| arm_X | 21482429..21482496 | 17..84 | 100 | | Minus |
BO13771.pep Sequence
Translation from 16 to 883
> BO13771.pep
MSKFLSQAALNTLRNTRLGSRQLVRSFKGISNTRNHRIPAHQESGCGHSV
GCGLLELRMPVACRRSMFIQTQDTPNPESLKFLPGVDVLGKGNTYDFPNG
TTAHNSPLAKLLFRVEGVKGVFFGADFVTISKQEGAEWSLIKPEVFAVIM
DFFASGLPVLNDAQPNADTEILEDDDETVMMIKELLDTRIRPTVQEDGGD
IVFMGYEGGVVKLKMQGSCSSCPSSIVTLKNGVQNMLQFYIPEVESVEQV
FDEADRMIESEFERFEKNLKTLKQQEPSGGGPHASFLDH
BO13771.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:57:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33502-PA | 283 | CG33502-PA | 1..283 | 1..283 | 1468 | 100 | Plus |
| CG32857-PA | 283 | CG32857-PA | 1..283 | 1..283 | 1468 | 100 | Plus |
| CG32500-PA | 283 | CG32500-PA | 1..283 | 1..283 | 1468 | 100 | Plus |
