Clone Sequence Records
BO13777.3prime Sequence
488 bp (487 high quality bases) assembled on 2006-05-08
> BO13777.3prime
ATGGTCTAGAAAGCTTGCGATCCCACAGATAACCTTAAGATTAGGCAGAT
TTTGGGCGTTTCGGCAATATCGTTGCCATCCCGCCCAATGACGAAAACCA
TCCGAGGTTTGGATGCGCTTGGCGCAAGTAACCGACTCCCTTAAATTTTC
GTCCAAAAAATCTTCGCACTTGGCATTGCAAATGCCGCCACGCCTTCCCT
CCTGACAAAACCTGCCATTGATTTGGAACAGCCCATAGTTCCGAGATCCA
TTCGCATTGGTTGTAATCCTGCCGGTATCCAGATCGCTTTCGTGCTCTAG
CAAACAAATCCAATTCGAGAGCAGACTGCGTTCGAAACCATGCTGATCGA
GCAACTTGCGGGCCAGTTCACAGCGCAGGAAACGCTTGGCGGAAACCACG
CCGCACTCGATGGCCAGAAGCAGGCCCAATCCCAATCCCAGCCAGTACCA
CGATCCGAATGGCGCAGCTCTCATGTCGACTGATAACT
BO13777.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:10:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16756-PA | 459 | CG16756-RA | 1..456 | 474..19 | 2255 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 12:07:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16756-RA | 521 | CG16756-RA | 12..467 | 474..19 | 2265 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 12:07:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 5427528..5427691 | 474..311 | 820 | 100 | Minus |
X | 23542271 | X | 5427806..5427959 | 311..158 | 755 | 99.4 | Minus |
X | 23542271 | X | 5428019..5428163 | 163..19 | 710 | 99.3 | Minus |
Blast to na_te.dros performed on 2015-02-06 12:07:34 has no hits.
BO13777.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:12:10 Download gff for
BO13777.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16756-PA | 1..459 | 18..474 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:01:31 Download gff for
BO13777.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16756-PA | 1..459 | 18..474 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 06:57:37 Download gff for
BO13777.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16756-RA | 2..467 | 19..482 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:38:42 Download gff for
BO13777.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16756-RA | 2..467 | 19..482 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:38:42 Download gff for
BO13777.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 5427518..5427690 | 312..482 | 98 | -> | Minus |
X | 5427806..5427955 | 162..311 | 100 | -> | Minus |
X | 5428021..5428163 | 19..161 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 06:57:37 Download gff for
BO13777.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 5321551..5321723 | 312..482 | 98 | -> | Minus |
arm_X | 5321839..5321988 | 162..311 | 100 | -> | Minus |
arm_X | 5322054..5322196 | 19..161 | 99 | | Minus |
BO13777.5prime Sequence
488 bp (487 high quality bases) assembled on 2006-05-08
> BO13777.5prime
GAAGTTATCAGTCGACATGAGAGCTGCGCCATTCGGATCGTGGTACTGGC
TGGGATTGGGATTGGGCCTGCTTCTGGCCATCGAGTGCGGCGTGGTTTCC
GCCAAGCGTTTCCTGCGCTGTGAACTGGCCCGCAAGTTGCTCGATCAGCA
TGGTTTCGAACGCAGTCTGCTCTCGAATTGGATTTGTTTGCTAGAGCACG
AAAGCGATCTGGATACCGGCAGGATTACAACCAATGCGAATGGATCTCGG
AACTATGGGCTGTTCCAAATCAATGGCAGGTTTTGTCAGGAGGGAAGGCG
TGGCGGCATTTGCAATGCCAAGTGCGAAGATTTTTTGGACGAAAATTTAA
GGGAGTCGGTTACTTGCGCCAAGCGCATCCAAACCTCGGATGGTTTTCGT
CATTGGGCGGGATGGCAACGATATTGCCGAAACGCCCAAAATCTGCCTAA
TCTTAAGGTTATCTGTGGGATCGCAAGCTTTCTAGACC
BO13777.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:10:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16756-PA | 459 | CG16756-RA | 1..456 | 17..472 | 2255 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 08:49:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16756-RA | 521 | CG16756-RA | 12..467 | 17..472 | 2265 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 08:48:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 5427528..5427691 | 17..180 | 820 | 100 | Plus |
X | 23542271 | X | 5427806..5427959 | 180..333 | 755 | 99.4 | Plus |
X | 23542271 | X | 5428019..5428163 | 328..472 | 710 | 99.3 | Plus |
Blast to na_te.dros performed on 2015-02-09 08:48:56 has no hits.
BO13777.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:12:10 Download gff for
BO13777.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16756-PA | 1..459 | 17..473 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:01:33 Download gff for
BO13777.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16756-PA | 1..459 | 17..473 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 18:13:24 Download gff for
BO13777.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16756-RA | 2..467 | 9..472 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 11:43:26 Download gff for
BO13777.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16756-RA | 2..467 | 9..472 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 11:43:26 Download gff for
BO13777.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 5427518..5427690 | 9..179 | 98 | -> | Plus |
X | 5427806..5427955 | 180..329 | 100 | -> | Plus |
X | 5428021..5428163 | 330..472 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 18:13:24 Download gff for
BO13777.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 5321551..5321723 | 9..179 | 98 | -> | Plus |
arm_X | 5321839..5321988 | 180..329 | 100 | -> | Plus |
arm_X | 5322054..5322196 | 330..472 | 99 | | Plus |
BO13777.complete Sequence
490 bp assembled on 2006-10-11
GenBank Submission: FJ632924
> BO13777.complete
GAAGTTATCAGTCGACATGAGAGCTGCGCCATTCGGATCGTGGTACTGGC
TGGGATTGGGATTGGGCCTGCTTCTGGCCATCGAGTGCGGCGTGGTTTCC
GCCAAGCGTTTCCTGCGCTGTGAACTGGCCCGCAAGTTGCTCGATCAGCA
TGGTTTCGAACGCAGTCTGCTCTCGAATTGGATTTGTTTGCTAGAGCACG
AAAGCGATCTGGATACCGGCAGGATTACAACCAATGCGAATGGATCTCGG
AACTATGGGCTGTTCCAAATCAATGGCAGGTTTTGTCAGGAGGGAAGGCG
TGGCGGCATTTGCAATGCCAAGTGCGAAGATTTTTTGGACGAAAATTTAA
GGGAGTCGGTTACTTGCGCCAAGCGCATCCAAACCTCGGATGGTTTTCGT
CATTGGGCGGGATGGCAACGATATTGCCGAAACGCCCAAAATCTGCCTAA
TCTTAAGGTTATCTGTGGGATCGCAAGCTTTCTAGACCAT
BO13777.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:57:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16756-RA | 459 | CG16756-PA | 1..456 | 17..472 | 2265 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:57:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16756-RA | 521 | CG16756-RA | 12..467 | 17..472 | 2265 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:57:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 5427528..5427691 | 17..180 | 820 | 100 | Plus |
X | 23542271 | X | 5427806..5427959 | 180..333 | 755 | 99.4 | Plus |
X | 23542271 | X | 5428019..5428163 | 328..472 | 710 | 99.3 | Plus |
Blast to na_te.dros performed on 2014-11-27 07:57:26 has no hits.
BO13777.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:44:54 Download gff for
BO13777.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16756-RA | 1..459 | 17..473 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:58:51 Download gff for
BO13777.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16756-RA | 2..467 | 9..472 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:27:51 Download gff for
BO13777.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16756-RA | 12..467 | 17..474 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:44:54 Download gff for
BO13777.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16756-RA | 2..467 | 9..472 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:08:05 Download gff for
BO13777.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16756-RA | 12..467 | 17..474 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:08:05 Download gff for
BO13777.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 5427528..5427690 | 17..179 | 100 | -> | Plus |
X | 5427806..5427955 | 180..329 | 100 | -> | Plus |
X | 5428021..5428163 | 330..474 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:27:51 Download gff for
BO13777.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 5321561..5321723 | 17..179 | 100 | -> | Plus |
arm_X | 5321839..5321988 | 180..329 | 100 | -> | Plus |
arm_X | 5322054..5322196 | 330..474 | 97 | | Plus |
BO13777.pep Sequence
Translation from 16 to 490
> BO13777.pep
MRAAPFGSWYWLGLGLGLLLAIECGVVSAKRFLRCELARKLLDQHGFERS
LLSNWICLLEHESDLDTGRITTNANGSRNYGLFQINGRFCQEGRRGGICN
AKCEDFLDENLRESVTCAKRIQTSDGFRHWAGWQRYCRNAQNLPNLKVIC
GIASFLDH
BO13777.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:57:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16756-PA | 152 | CG16756-PA | 1..152 | 1..152 | 834 | 100 | Plus |
CG16799-PB | 179 | CG16799-PB | 27..166 | 18..154 | 426 | 50 | Plus |
CG16799-PA | 179 | CG16799-PA | 27..166 | 18..154 | 426 | 50 | Plus |
CG11159-PA | 146 | CG11159-PA | 6..143 | 5..146 | 291 | 44.8 | Plus |
CG7798-PA | 148 | CG7798-PA | 6..136 | 18..146 | 203 | 35.1 | Plus |