Clone BO13777 Report

Search the DGRC for BO13777

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:137
Well:77
Vector:pDNR-Dual
Associated Gene/TranscriptCG16756-RA
Protein status:BO13777.pep: validated full length
Sequenced Size:490

Clone Sequence Records

BO13777.3prime Sequence

488 bp (487 high quality bases) assembled on 2006-05-08

> BO13777.3prime
ATGGTCTAGAAAGCTTGCGATCCCACAGATAACCTTAAGATTAGGCAGAT
TTTGGGCGTTTCGGCAATATCGTTGCCATCCCGCCCAATGACGAAAACCA
TCCGAGGTTTGGATGCGCTTGGCGCAAGTAACCGACTCCCTTAAATTTTC
GTCCAAAAAATCTTCGCACTTGGCATTGCAAATGCCGCCACGCCTTCCCT
CCTGACAAAACCTGCCATTGATTTGGAACAGCCCATAGTTCCGAGATCCA
TTCGCATTGGTTGTAATCCTGCCGGTATCCAGATCGCTTTCGTGCTCTAG
CAAACAAATCCAATTCGAGAGCAGACTGCGTTCGAAACCATGCTGATCGA
GCAACTTGCGGGCCAGTTCACAGCGCAGGAAACGCTTGGCGGAAACCACG
CCGCACTCGATGGCCAGAAGCAGGCCCAATCCCAATCCCAGCCAGTACCA
CGATCCGAATGGCGCAGCTCTCATGTCGACTGATAACT

BO13777.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:10:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG16756-PA 459 CG16756-RA 1..456 474..19 2255 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 12:07:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG16756-RA 521 CG16756-RA 12..467 474..19 2265 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 12:07:30
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 5427528..5427691 474..311 820 100 Minus
X 23542271 X 5427806..5427959 311..158 755 99.4 Minus
X 23542271 X 5428019..5428163 163..19 710 99.3 Minus
Blast to na_te.dros performed on 2015-02-06 12:07:34 has no hits.

BO13777.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:12:10 Download gff for BO13777.3prime
Subject Subject Range Query Range Percent Splice Strand
CG16756-PA 1..459 18..474 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:01:31 Download gff for BO13777.3prime
Subject Subject Range Query Range Percent Splice Strand
CG16756-PA 1..459 18..474 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 06:57:37 Download gff for BO13777.3prime
Subject Subject Range Query Range Percent Splice Strand
CG16756-RA 2..467 19..482 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:38:42 Download gff for BO13777.3prime
Subject Subject Range Query Range Percent Splice Strand
CG16756-RA 2..467 19..482 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:38:42 Download gff for BO13777.3prime
Subject Subject Range Query Range Percent Splice Strand
X 5427518..5427690 312..482 98 -> Minus
X 5427806..5427955 162..311 100 -> Minus
X 5428021..5428163 19..161 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 06:57:37 Download gff for BO13777.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 5321551..5321723 312..482 98 -> Minus
arm_X 5321839..5321988 162..311 100 -> Minus
arm_X 5322054..5322196 19..161 99   Minus

BO13777.5prime Sequence

488 bp (487 high quality bases) assembled on 2006-05-08

> BO13777.5prime
GAAGTTATCAGTCGACATGAGAGCTGCGCCATTCGGATCGTGGTACTGGC
TGGGATTGGGATTGGGCCTGCTTCTGGCCATCGAGTGCGGCGTGGTTTCC
GCCAAGCGTTTCCTGCGCTGTGAACTGGCCCGCAAGTTGCTCGATCAGCA
TGGTTTCGAACGCAGTCTGCTCTCGAATTGGATTTGTTTGCTAGAGCACG
AAAGCGATCTGGATACCGGCAGGATTACAACCAATGCGAATGGATCTCGG
AACTATGGGCTGTTCCAAATCAATGGCAGGTTTTGTCAGGAGGGAAGGCG
TGGCGGCATTTGCAATGCCAAGTGCGAAGATTTTTTGGACGAAAATTTAA
GGGAGTCGGTTACTTGCGCCAAGCGCATCCAAACCTCGGATGGTTTTCGT
CATTGGGCGGGATGGCAACGATATTGCCGAAACGCCCAAAATCTGCCTAA
TCTTAAGGTTATCTGTGGGATCGCAAGCTTTCTAGACC

BO13777.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:10:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG16756-PA 459 CG16756-RA 1..456 17..472 2255 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 08:49:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG16756-RA 521 CG16756-RA 12..467 17..472 2265 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 08:48:52
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 5427528..5427691 17..180 820 100 Plus
X 23542271 X 5427806..5427959 180..333 755 99.4 Plus
X 23542271 X 5428019..5428163 328..472 710 99.3 Plus
Blast to na_te.dros performed on 2015-02-09 08:48:56 has no hits.

BO13777.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:12:10 Download gff for BO13777.5prime
Subject Subject Range Query Range Percent Splice Strand
CG16756-PA 1..459 17..473 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:01:33 Download gff for BO13777.5prime
Subject Subject Range Query Range Percent Splice Strand
CG16756-PA 1..459 17..473 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 18:13:24 Download gff for BO13777.5prime
Subject Subject Range Query Range Percent Splice Strand
CG16756-RA 2..467 9..472 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 11:43:26 Download gff for BO13777.5prime
Subject Subject Range Query Range Percent Splice Strand
CG16756-RA 2..467 9..472 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 11:43:26 Download gff for BO13777.5prime
Subject Subject Range Query Range Percent Splice Strand
X 5427518..5427690 9..179 98 -> Plus
X 5427806..5427955 180..329 100 -> Plus
X 5428021..5428163 330..472 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 18:13:24 Download gff for BO13777.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 5321551..5321723 9..179 98 -> Plus
arm_X 5321839..5321988 180..329 100 -> Plus
arm_X 5322054..5322196 330..472 99   Plus

BO13777.complete Sequence

490 bp assembled on 2006-10-11

GenBank Submission: FJ632924

> BO13777.complete
GAAGTTATCAGTCGACATGAGAGCTGCGCCATTCGGATCGTGGTACTGGC
TGGGATTGGGATTGGGCCTGCTTCTGGCCATCGAGTGCGGCGTGGTTTCC
GCCAAGCGTTTCCTGCGCTGTGAACTGGCCCGCAAGTTGCTCGATCAGCA
TGGTTTCGAACGCAGTCTGCTCTCGAATTGGATTTGTTTGCTAGAGCACG
AAAGCGATCTGGATACCGGCAGGATTACAACCAATGCGAATGGATCTCGG
AACTATGGGCTGTTCCAAATCAATGGCAGGTTTTGTCAGGAGGGAAGGCG
TGGCGGCATTTGCAATGCCAAGTGCGAAGATTTTTTGGACGAAAATTTAA
GGGAGTCGGTTACTTGCGCCAAGCGCATCCAAACCTCGGATGGTTTTCGT
CATTGGGCGGGATGGCAACGATATTGCCGAAACGCCCAAAATCTGCCTAA
TCTTAAGGTTATCTGTGGGATCGCAAGCTTTCTAGACCAT

BO13777.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:57:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG16756-RA 459 CG16756-PA 1..456 17..472 2265 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:57:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG16756-RA 521 CG16756-RA 12..467 17..472 2265 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:57:25
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 5427528..5427691 17..180 820 100 Plus
X 23542271 X 5427806..5427959 180..333 755 99.4 Plus
X 23542271 X 5428019..5428163 328..472 710 99.3 Plus
Blast to na_te.dros performed on 2014-11-27 07:57:26 has no hits.

BO13777.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:44:54 Download gff for BO13777.complete
Subject Subject Range Query Range Percent Splice Strand
CG16756-RA 1..459 17..473 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:58:51 Download gff for BO13777.complete
Subject Subject Range Query Range Percent Splice Strand
CG16756-RA 2..467 9..472 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:27:51 Download gff for BO13777.complete
Subject Subject Range Query Range Percent Splice Strand
CG16756-RA 12..467 17..474 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:44:54 Download gff for BO13777.complete
Subject Subject Range Query Range Percent Splice Strand
CG16756-RA 2..467 9..472 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:08:05 Download gff for BO13777.complete
Subject Subject Range Query Range Percent Splice Strand
CG16756-RA 12..467 17..474 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:08:05 Download gff for BO13777.complete
Subject Subject Range Query Range Percent Splice Strand
X 5427528..5427690 17..179 100 -> Plus
X 5427806..5427955 180..329 100 -> Plus
X 5428021..5428163 330..474 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:27:51 Download gff for BO13777.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 5321561..5321723 17..179 100 -> Plus
arm_X 5321839..5321988 180..329 100 -> Plus
arm_X 5322054..5322196 330..474 97   Plus

BO13777.pep Sequence

Translation from 16 to 490

> BO13777.pep
MRAAPFGSWYWLGLGLGLLLAIECGVVSAKRFLRCELARKLLDQHGFERS
LLSNWICLLEHESDLDTGRITTNANGSRNYGLFQINGRFCQEGRRGGICN
AKCEDFLDENLRESVTCAKRIQTSDGFRHWAGWQRYCRNAQNLPNLKVIC
GIASFLDH

BO13777.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:57:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG16756-PA 152 CG16756-PA 1..152 1..152 834 100 Plus
CG16799-PB 179 CG16799-PB 27..166 18..154 426 50 Plus
CG16799-PA 179 CG16799-PA 27..166 18..154 426 50 Plus
CG11159-PA 146 CG11159-PA 6..143 5..146 291 44.8 Plus
CG7798-PA 148 CG7798-PA 6..136 18..146 203 35.1 Plus