Clone Sequence Records
BO13780.complete Sequence
592 bp assembled on 2010-02-09
GenBank Submission: FJ632925
> BO13780.complete
GAAGTTATCAGTCGACATGGTCGGTTGGAGCCGTTTGCTGTCGCCGGCGG
CGAAGTTCGCCAGCTACCGGGCTGTCCTGCAAGAGCCCGCGTGCCGGAAT
GCCCTGCACCAACAGCTGCGCAGAATGGGAGGCGATCATGGACACCACCA
AATGATCATCAAGCCATCCCGCTTCCAGTGGGACAAGTTCAAGGATCTGT
TGCACTTTTACGTAATGCTCGGCGTCATCCCAGTCACCGCATTGGTTCTC
TACGCGAACATCTTTGTGGGACCCGCGCAGCTCGCCGAGATTCCCGAGGG
CTATGAGCCCAAGCACTGGGAGTACGAGAAGCACCCCATCTCGCGCTTTA
TTTCCCGCTACATTTTGAACTCGGATCAGCAAAACTACGAGAAATCCCTG
CACTATCTCTACGAGGAGAACGAAAAAGCCCAGATTCGACTCCTTGAGGA
CGAAGTACGTCGCAAGATGTCGGAGCGCAATGATTACCAGGCCTACTACT
ACCGACCATCGGTGGCCAAGTACCACAGGATTTCGAAAGAGGCTGCTGAC
GAGCTGGAGGCTCTGCGCGGAGACGCAAGCTTTCTAGACCAT
BO13780.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:22:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
l(3)neo18-RB | 561 | CG9762-PB | 1..558 | 17..574 | 2790 | 100 | Plus |
l(3)neo18-RA | 561 | CG9762-PA | 1..558 | 17..574 | 2790 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:22:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
l(3)neo18-RB | 714 | CG9762-RB | 73..630 | 17..574 | 2790 | 100 | Plus |
l(3)neo18-RA | 888 | CG9762-RA | 184..741 | 17..574 | 2790 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:22:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 12138016..12138246 | 331..101 | 1155 | 100 | Minus |
3L | 28110227 | 3L | 12137643..12137779 | 574..438 | 685 | 100 | Minus |
3L | 28110227 | 3L | 12137838..12137946 | 438..330 | 545 | 100 | Minus |
3L | 28110227 | 3L | 12138317..12138401 | 101..17 | 425 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 04:22:38 has no hits.
BO13780.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:02:15 Download gff for
BO13780.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(3)neo18-RA | 1..561 | 17..575 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:09:32 Download gff for
BO13780.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(3)neo18-RA | 184..741 | 17..576 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:57:52 Download gff for
BO13780.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(3)neo18-RA | 184..741 | 17..576 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:40:38 Download gff for
BO13780.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(3)neo18-RA | 184..741 | 17..576 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:27:04 Download gff for
BO13780.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(3)neo18-RA | 184..741 | 17..576 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:27:04 Download gff for
BO13780.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 12137641..12137778 | 439..576 | 98 | <- | Minus |
3L | 12137838..12137944 | 332..438 | 100 | <- | Minus |
3L | 12138016..12138245 | 102..331 | 100 | <- | Minus |
3L | 12138317..12138401 | 17..101 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:57:52 Download gff for
BO13780.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 12130741..12130878 | 439..576 | 98 | <- | Minus |
arm_3L | 12130938..12131044 | 332..438 | 100 | <- | Minus |
arm_3L | 12131116..12131345 | 102..331 | 100 | <- | Minus |
arm_3L | 12131417..12131501 | 17..101 | 100 | | Minus |
BO13780.3prime Sequence
590 bp (486 high quality bases) assembled on 2006-05-08
> BO13780.3prime
ATGGTCTAGAAAGCTTGCGTCTCCGCGCAGAGCCTCCAGCTCGTCAGCAG
CCTCTTTCGAAATCCTGTGGTACTTGGCCACCGATGGTCGGTAGTAGTAG
GCCTGGTAATCATTGCGCTCCGACATCTTGCGACGTACTTCGTCCTCAAG
GAGTCGAATCTGGGCTTTTTCGTTCTCCTCGTAGAGATAGTGCAGGGATT
TCTCGTAGTTTTGCTGATCCGAGTTCAAAATGTAGCGGGAAATAAAGCGC
GAGATGGGGTGCTTCTCGTACTCCCAGTGCTTGGGCTCATAGCCCTCGGG
AATCTCGGCGAGCTGCGCGGGTCCCACAAAGATGTTCGCGTAGAGAACCA
ATGCGGTGACTGGGATGACGCCGAGCATTACGTAAAAGTGCAACAGATCC
TTGAACTTGTCCCACTGGAAGCGGGATGGCTTGATGATCATTTGGTGGTG
TCCATGATCGCCTCCCATTCTGCGCAGCTGTTGGTGCAGGGCATTCCGGC
ACGCGGGCTCTTGCAGGACAGCCCGGTAGCTGGCGAACTTTCCCGCCGGC
GACAGCAAACGGGTCCAACCGACCATGTCGACTGATAACT
BO13780.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:10:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9762-PA | 561 | l(3)neo18-RA | 1..558 | 576..19 | 2715 | 99.4 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 12:11:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
l(3)neo18-RB | 714 | CG9762-RB | 73..630 | 576..19 | 2745 | 99.5 | Minus |
l(3)neo18-RA | 888 | CG9762-RA | 184..741 | 576..19 | 2745 | 99.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 12:11:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 12138016..12138246 | 262..492 | 1155 | 100 | Plus |
3L | 28110227 | 3L | 12137643..12137779 | 19..155 | 685 | 100 | Plus |
3L | 28110227 | 3L | 12137838..12137946 | 155..263 | 545 | 100 | Plus |
3L | 28110227 | 3L | 12138317..12138401 | 492..576 | 380 | 96.5 | Plus |
Blast to na_te.dros performed on 2015-02-06 12:11:52 has no hits.
BO13780.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:12:14 Download gff for
BO13780.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9762-PA | 1..561 | 18..576 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:01:38 Download gff for
BO13780.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9762-PA | 1..561 | 18..576 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 06:58:16 Download gff for
BO13780.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(3)neo18-RA | 184..741 | 19..576 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:39:14 Download gff for
BO13780.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(3)neo18-RA | 184..741 | 19..576 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:39:14 Download gff for
BO13780.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 12137838..12137944 | 155..261 | 100 | <- | Plus |
3L | 12137643..12137778 | 19..154 | 100 | <- | Plus |
3L | 12138016..12138245 | 262..491 | 100 | <- | Plus |
3L | 12138317..12138404 | 492..577 | 93 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 06:58:16 Download gff for
BO13780.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 12130743..12130878 | 19..154 | 100 | <- | Plus |
arm_3L | 12130938..12131044 | 155..261 | 100 | <- | Plus |
arm_3L | 12131116..12131345 | 262..491 | 100 | <- | Plus |
arm_3L | 12131417..12131504 | 492..577 | 93 | <- | Plus |
BO13780.5prime Sequence
594 bp (593 high quality bases) assembled on 2006-05-08
> BO13780.5prime
GAAGTTATCAGTCGACATGGTCGGTTGGAGCCGTTTGCTGTCGCCGGCGG
CGAAGTTCGCCAGCTACCGGGCTGTCCTGCAAGAGCCCGCGTGCCGGAAT
GCCCTGCACCAACAGCTGCGCAGAATGGGAGGCGATCATGGACACCACCA
AATGATCATCAAGCCATCCCGCTTCCAGTGGGACAAGTTCAAGGATCTGT
TGCACTTTTACGTAATGCTCGGCGTCATCCCAGTCACCGCATTGGTTCTC
TACGCGAACATCTTTGTGGGACCCGCGCAGCTCGCCGAGATTCCCGAGGG
CTATGAGCCCAAGCACTGGGAGTACGAGAAGCACCCCATCTCGCGCTTTA
TTTCCCGCTACATTTTGAACTCGGATCAGCAAAACTACGAGAAATCCCTG
CACTATCTCTACGAGGAGAACGAAAAAGCCCAGATTCGACTCCTTGAGGA
CGAAGTACGTCGCAAGATGTCGGAGCGCAATGATTACCAGGCCTACTACT
ACCGACCATCGGTGGCCAAGTACCACAGGATTTCGAAAGAGGCTGCTGAC
GAGCTGGAGGCTCTGCGCGGAGACGCAAGCTTTCTAGACCATTC
BO13780.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:10:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9762-PA | 561 | l(3)neo18-RA | 1..558 | 17..574 | 2790 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:59:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
l(3)neo18-RB | 714 | CG9762-RB | 73..630 | 17..574 | 2790 | 100 | Plus |
l(3)neo18-RA | 888 | CG9762-RA | 184..741 | 17..574 | 2790 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:59:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 12138016..12138246 | 331..101 | 1155 | 100 | Minus |
3L | 28110227 | 3L | 12137643..12137779 | 574..438 | 685 | 100 | Minus |
3L | 28110227 | 3L | 12137838..12137946 | 438..330 | 545 | 100 | Minus |
3L | 28110227 | 3L | 12138317..12138401 | 101..17 | 425 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 10:59:36 has no hits.
BO13780.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:12:15 Download gff for
BO13780.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9762-PA | 1..561 | 17..575 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:01:40 Download gff for
BO13780.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9762-PA | 1..561 | 17..575 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 05:17:24 Download gff for
BO13780.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(3)neo18-RA | 184..741 | 17..574 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:23:31 Download gff for
BO13780.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(3)neo18-RA | 184..741 | 17..574 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:23:31 Download gff for
BO13780.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 12137643..12137778 | 439..574 | 100 | <- | Minus |
3L | 12137838..12137944 | 332..438 | 100 | <- | Minus |
3L | 12138016..12138245 | 102..331 | 100 | <- | Minus |
3L | 12138317..12138404 | 14..101 | 97 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 05:17:24 Download gff for
BO13780.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 12130743..12130878 | 439..574 | 100 | <- | Minus |
arm_3L | 12130938..12131044 | 332..438 | 100 | <- | Minus |
arm_3L | 12131116..12131345 | 102..331 | 100 | <- | Minus |
arm_3L | 12131417..12131504 | 14..101 | 97 | <- | Minus |
BO13780.pep Sequence
Translation from 16 to 592
> BO13780.pep
MVGWSRLLSPAAKFASYRAVLQEPACRNALHQQLRRMGGDHGHHQMIIKP
SRFQWDKFKDLLHFYVMLGVIPVTALVLYANIFVGPAQLAEIPEGYEPKH
WEYEKHPISRFISRYILNSDQQNYEKSLHYLYEENEKAQIRLLEDEVRRK
MSERNDYQAYYYRPSVAKYHRISKEAADELEALRGDASFLDH
BO13780.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:53:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
l(3)neo18-PB | 186 | CG9762-PB | 1..186 | 1..186 | 989 | 100 | Plus |
l(3)neo18-PA | 186 | CG9762-PA | 1..186 | 1..186 | 989 | 100 | Plus |