Clone BO13780 Report

Search the DGRC for BO13780

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:137
Well:80
Vector:pDNR-Dual
Associated Gene/Transcriptl(3)neo18-RA
Protein status:BO13780.pep: Imported from assembly
Sequenced Size:592

Clone Sequence Records

BO13780.complete Sequence

592 bp assembled on 2010-02-09

GenBank Submission: FJ632925

> BO13780.complete
GAAGTTATCAGTCGACATGGTCGGTTGGAGCCGTTTGCTGTCGCCGGCGG
CGAAGTTCGCCAGCTACCGGGCTGTCCTGCAAGAGCCCGCGTGCCGGAAT
GCCCTGCACCAACAGCTGCGCAGAATGGGAGGCGATCATGGACACCACCA
AATGATCATCAAGCCATCCCGCTTCCAGTGGGACAAGTTCAAGGATCTGT
TGCACTTTTACGTAATGCTCGGCGTCATCCCAGTCACCGCATTGGTTCTC
TACGCGAACATCTTTGTGGGACCCGCGCAGCTCGCCGAGATTCCCGAGGG
CTATGAGCCCAAGCACTGGGAGTACGAGAAGCACCCCATCTCGCGCTTTA
TTTCCCGCTACATTTTGAACTCGGATCAGCAAAACTACGAGAAATCCCTG
CACTATCTCTACGAGGAGAACGAAAAAGCCCAGATTCGACTCCTTGAGGA
CGAAGTACGTCGCAAGATGTCGGAGCGCAATGATTACCAGGCCTACTACT
ACCGACCATCGGTGGCCAAGTACCACAGGATTTCGAAAGAGGCTGCTGAC
GAGCTGGAGGCTCTGCGCGGAGACGCAAGCTTTCTAGACCAT

BO13780.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:22:39
Subject Length Description Subject Range Query Range Score Percent Strand
l(3)neo18-RB 561 CG9762-PB 1..558 17..574 2790 100 Plus
l(3)neo18-RA 561 CG9762-PA 1..558 17..574 2790 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:22:40
Subject Length Description Subject Range Query Range Score Percent Strand
l(3)neo18-RB 714 CG9762-RB 73..630 17..574 2790 100 Plus
l(3)neo18-RA 888 CG9762-RA 184..741 17..574 2790 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:22:37
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 12138016..12138246 331..101 1155 100 Minus
3L 28110227 3L 12137643..12137779 574..438 685 100 Minus
3L 28110227 3L 12137838..12137946 438..330 545 100 Minus
3L 28110227 3L 12138317..12138401 101..17 425 100 Minus
Blast to na_te.dros performed on 2014-11-28 04:22:38 has no hits.

BO13780.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:02:15 Download gff for BO13780.complete
Subject Subject Range Query Range Percent Splice Strand
l(3)neo18-RA 1..561 17..575 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:09:32 Download gff for BO13780.complete
Subject Subject Range Query Range Percent Splice Strand
l(3)neo18-RA 184..741 17..576 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:57:52 Download gff for BO13780.complete
Subject Subject Range Query Range Percent Splice Strand
l(3)neo18-RA 184..741 17..576 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:40:38 Download gff for BO13780.complete
Subject Subject Range Query Range Percent Splice Strand
l(3)neo18-RA 184..741 17..576 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:27:04 Download gff for BO13780.complete
Subject Subject Range Query Range Percent Splice Strand
l(3)neo18-RA 184..741 17..576 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:27:04 Download gff for BO13780.complete
Subject Subject Range Query Range Percent Splice Strand
3L 12137641..12137778 439..576 98 <- Minus
3L 12137838..12137944 332..438 100 <- Minus
3L 12138016..12138245 102..331 100 <- Minus
3L 12138317..12138401 17..101 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:57:52 Download gff for BO13780.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 12130741..12130878 439..576 98 <- Minus
arm_3L 12130938..12131044 332..438 100 <- Minus
arm_3L 12131116..12131345 102..331 100 <- Minus
arm_3L 12131417..12131501 17..101 100   Minus

BO13780.3prime Sequence

590 bp (486 high quality bases) assembled on 2006-05-08

> BO13780.3prime
ATGGTCTAGAAAGCTTGCGTCTCCGCGCAGAGCCTCCAGCTCGTCAGCAG
CCTCTTTCGAAATCCTGTGGTACTTGGCCACCGATGGTCGGTAGTAGTAG
GCCTGGTAATCATTGCGCTCCGACATCTTGCGACGTACTTCGTCCTCAAG
GAGTCGAATCTGGGCTTTTTCGTTCTCCTCGTAGAGATAGTGCAGGGATT
TCTCGTAGTTTTGCTGATCCGAGTTCAAAATGTAGCGGGAAATAAAGCGC
GAGATGGGGTGCTTCTCGTACTCCCAGTGCTTGGGCTCATAGCCCTCGGG
AATCTCGGCGAGCTGCGCGGGTCCCACAAAGATGTTCGCGTAGAGAACCA
ATGCGGTGACTGGGATGACGCCGAGCATTACGTAAAAGTGCAACAGATCC
TTGAACTTGTCCCACTGGAAGCGGGATGGCTTGATGATCATTTGGTGGTG
TCCATGATCGCCTCCCATTCTGCGCAGCTGTTGGTGCAGGGCATTCCGGC
ACGCGGGCTCTTGCAGGACAGCCCGGTAGCTGGCGAACTTTCCCGCCGGC
GACAGCAAACGGGTCCAACCGACCATGTCGACTGATAACT

BO13780.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:10:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG9762-PA 561 l(3)neo18-RA 1..558 576..19 2715 99.4 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 12:11:57
Subject Length Description Subject Range Query Range Score Percent Strand
l(3)neo18-RB 714 CG9762-RB 73..630 576..19 2745 99.5 Minus
l(3)neo18-RA 888 CG9762-RA 184..741 576..19 2745 99.5 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 12:11:48
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 12138016..12138246 262..492 1155 100 Plus
3L 28110227 3L 12137643..12137779 19..155 685 100 Plus
3L 28110227 3L 12137838..12137946 155..263 545 100 Plus
3L 28110227 3L 12138317..12138401 492..576 380 96.5 Plus
Blast to na_te.dros performed on 2015-02-06 12:11:52 has no hits.

BO13780.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:12:14 Download gff for BO13780.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9762-PA 1..561 18..576 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:01:38 Download gff for BO13780.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9762-PA 1..561 18..576 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 06:58:16 Download gff for BO13780.3prime
Subject Subject Range Query Range Percent Splice Strand
l(3)neo18-RA 184..741 19..576 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:39:14 Download gff for BO13780.3prime
Subject Subject Range Query Range Percent Splice Strand
l(3)neo18-RA 184..741 19..576 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:39:14 Download gff for BO13780.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 12137838..12137944 155..261 100 <- Plus
3L 12137643..12137778 19..154 100 <- Plus
3L 12138016..12138245 262..491 100 <- Plus
3L 12138317..12138404 492..577 93 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 06:58:16 Download gff for BO13780.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 12130743..12130878 19..154 100 <- Plus
arm_3L 12130938..12131044 155..261 100 <- Plus
arm_3L 12131116..12131345 262..491 100 <- Plus
arm_3L 12131417..12131504 492..577 93 <- Plus

BO13780.5prime Sequence

594 bp (593 high quality bases) assembled on 2006-05-08

> BO13780.5prime
GAAGTTATCAGTCGACATGGTCGGTTGGAGCCGTTTGCTGTCGCCGGCGG
CGAAGTTCGCCAGCTACCGGGCTGTCCTGCAAGAGCCCGCGTGCCGGAAT
GCCCTGCACCAACAGCTGCGCAGAATGGGAGGCGATCATGGACACCACCA
AATGATCATCAAGCCATCCCGCTTCCAGTGGGACAAGTTCAAGGATCTGT
TGCACTTTTACGTAATGCTCGGCGTCATCCCAGTCACCGCATTGGTTCTC
TACGCGAACATCTTTGTGGGACCCGCGCAGCTCGCCGAGATTCCCGAGGG
CTATGAGCCCAAGCACTGGGAGTACGAGAAGCACCCCATCTCGCGCTTTA
TTTCCCGCTACATTTTGAACTCGGATCAGCAAAACTACGAGAAATCCCTG
CACTATCTCTACGAGGAGAACGAAAAAGCCCAGATTCGACTCCTTGAGGA
CGAAGTACGTCGCAAGATGTCGGAGCGCAATGATTACCAGGCCTACTACT
ACCGACCATCGGTGGCCAAGTACCACAGGATTTCGAAAGAGGCTGCTGAC
GAGCTGGAGGCTCTGCGCGGAGACGCAAGCTTTCTAGACCATTC

BO13780.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:10:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG9762-PA 561 l(3)neo18-RA 1..558 17..574 2790 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:59:38
Subject Length Description Subject Range Query Range Score Percent Strand
l(3)neo18-RB 714 CG9762-RB 73..630 17..574 2790 100 Plus
l(3)neo18-RA 888 CG9762-RA 184..741 17..574 2790 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:59:34
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 12138016..12138246 331..101 1155 100 Minus
3L 28110227 3L 12137643..12137779 574..438 685 100 Minus
3L 28110227 3L 12137838..12137946 438..330 545 100 Minus
3L 28110227 3L 12138317..12138401 101..17 425 100 Minus
Blast to na_te.dros performed on 2015-02-12 10:59:36 has no hits.

BO13780.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:12:15 Download gff for BO13780.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9762-PA 1..561 17..575 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:01:40 Download gff for BO13780.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9762-PA 1..561 17..575 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 05:17:24 Download gff for BO13780.5prime
Subject Subject Range Query Range Percent Splice Strand
l(3)neo18-RA 184..741 17..574 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:23:31 Download gff for BO13780.5prime
Subject Subject Range Query Range Percent Splice Strand
l(3)neo18-RA 184..741 17..574 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:23:31 Download gff for BO13780.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 12137643..12137778 439..574 100 <- Minus
3L 12137838..12137944 332..438 100 <- Minus
3L 12138016..12138245 102..331 100 <- Minus
3L 12138317..12138404 14..101 97 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 05:17:24 Download gff for BO13780.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 12130743..12130878 439..574 100 <- Minus
arm_3L 12130938..12131044 332..438 100 <- Minus
arm_3L 12131116..12131345 102..331 100 <- Minus
arm_3L 12131417..12131504 14..101 97 <- Minus

BO13780.pep Sequence

Translation from 16 to 592

> BO13780.pep
MVGWSRLLSPAAKFASYRAVLQEPACRNALHQQLRRMGGDHGHHQMIIKP
SRFQWDKFKDLLHFYVMLGVIPVTALVLYANIFVGPAQLAEIPEGYEPKH
WEYEKHPISRFISRYILNSDQQNYEKSLHYLYEENEKAQIRLLEDEVRRK
MSERNDYQAYYYRPSVAKYHRISKEAADELEALRGDASFLDH

BO13780.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:53:08
Subject Length Description Subject Range Query Range Score Percent Strand
l(3)neo18-PB 186 CG9762-PB 1..186 1..186 989 100 Plus
l(3)neo18-PA 186 CG9762-PA 1..186 1..186 989 100 Plus