Clone Sequence Records
BO13796.3prime Sequence
522 bp (521 high quality bases) assembled on 2006-05-08
> BO13796.3prime
ATGGTCTAGAAAGGCTTGCGACCTCCAGAATTGCCGACATGGTCTTCTTG
ACCGCATCGCGGGCGTAGGGGATGTACGACAGCGAGTACCAGGTCATGGC
CAGAGATTGTATGATAATGAATATAAGCGTGAGTCCCGCCTTTTTCCACA
CAATAGCAGCGATGAACGTCAGGACCATCATGACGAGCACGATGATGGTG
GCGATCAGCCGTGTTTCCGCAAACATTTTCTTGATCTGCTTGAAGGGACC
CATGAGAAAGCAGGTACTGGCCATCGAGATGACGTTTCCTAGAGTGTAGA
AGACCGCAAAGACCACAATGCCCCTGTGCAGAAATAGGGCGACCGAGCCG
AGTAGGGAAAGTAAGATGCCCAAGGCAAAGCAGATGACGAATCCCTTGAT
CCGAGTGGACCAGCTCAAAGTGGACATGTCGTTGATCTGCGTAATGATAC
TGCTCTCCTCCTCCGGAGTGGGCTCATCTCCACTCAGAACGCGGCGCAAC
TTGTCCATGTCGACTGATAACT
BO13796.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:10:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5104-PB | 492 | CG5104-RB | 1..489 | 508..20 | 2445 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:41:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5104-RB | 787 | CG5104-RB | 148..636 | 508..20 | 2445 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:41:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 20521408..20521584 | 443..267 | 885 | 100 | Minus |
3L | 28110227 | 3L | 20522154..20522283 | 149..20 | 650 | 100 | Minus |
3L | 28110227 | 3L | 20521657..20521777 | 269..149 | 605 | 100 | Minus |
3L | 28110227 | 3L | 20521156..20521227 | 508..437 | 360 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 15:41:55 has no hits.
BO13796.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:12:36 Download gff for
BO13796.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5104-PB | 1..492 | 19..508 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:02:10 Download gff for
BO13796.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5104-PB | 1..492 | 19..508 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 23:16:43 Download gff for
BO13796.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5104-RB | 144..636 | 20..516 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:25:19 Download gff for
BO13796.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5104-RB | 144..636 | 20..516 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:25:19 Download gff for
BO13796.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 20521152..20521227 | 437..516 | 95 | -> | Minus |
3L | 20521415..20521584 | 267..436 | 100 | -> | Minus |
3L | 20521660..20521777 | 149..266 | 100 | -> | Minus |
3L | 20522155..20522283 | 20..148 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 23:16:43 Download gff for
BO13796.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 20514252..20514327 | 437..516 | 95 | -> | Minus |
arm_3L | 20514515..20514684 | 267..436 | 100 | -> | Minus |
arm_3L | 20514760..20514877 | 149..266 | 100 | -> | Minus |
arm_3L | 20515255..20515383 | 20..148 | 100 | | Minus |
BO13796.5prime Sequence
522 bp (521 high quality bases) assembled on 2006-05-08
> BO13796.5prime
GAAGTTATCAGTCGACATGGACAAGTTGCGCCGCGTTCTGAGTGGAGATG
AGCCCACTCCGGAGGAGGAGAGCAGTATCATTACGCAGATCAACGACATG
TCCACTTTGAGCTGGTCCACTCGGATCAAGGGATTCGTCATCTGCTTTGC
CTTGGGCATCTTACTTTCCCTACTCGGCTCGGTCGCCCTATTTCTGCACA
GGGGCATTGTGGTCTTTGCGGTCTTCTACACTCTAGGAAACGTCATCTCG
ATGGCCAGTACCTGCTTTCTCATGGGTCCCTTCAAGCAGATCAAGAAAAT
GTTTGCGGAAACACGGCTGATCGCCACCATCATCGTGCTCGTCATGATGG
TCCTGACGTTCATCGCTGCTATTGTGTGGAAAAAGGCGGGACTCACGCTT
ATATTCATTATCATACAATCTCTGGCCATGACCTGGTACTCGCTGTCGTA
CATCCCCTACGCCCGCGATGCGGTCAAGAAGACCATGTCGGCAATTCTGG
AGGTCGCAAGCCTTTCTAGACC
BO13796.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:10:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5104-PB | 492 | CG5104-RB | 1..489 | 17..505 | 2445 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 23:44:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5104-RB | 787 | CG5104-RB | 148..636 | 17..505 | 2445 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 23:44:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 20521408..20521584 | 82..258 | 885 | 100 | Plus |
3L | 28110227 | 3L | 20522154..20522283 | 376..505 | 650 | 100 | Plus |
3L | 28110227 | 3L | 20521657..20521777 | 256..376 | 605 | 100 | Plus |
3L | 28110227 | 3L | 20521156..20521227 | 17..88 | 360 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-09 23:44:21 has no hits.
BO13796.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:12:37 Download gff for
BO13796.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5104-PB | 1..492 | 17..506 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:02:12 Download gff for
BO13796.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5104-PB | 1..492 | 17..506 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:30:04 Download gff for
BO13796.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5104-RB | 144..636 | 9..505 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 00:57:53 Download gff for
BO13796.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5104-RB | 144..636 | 9..505 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 00:57:53 Download gff for
BO13796.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 20521152..20521227 | 9..88 | 95 | -> | Plus |
3L | 20521415..20521584 | 89..258 | 100 | -> | Plus |
3L | 20521660..20521777 | 259..376 | 100 | -> | Plus |
3L | 20522155..20522283 | 377..505 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:30:04 Download gff for
BO13796.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 20514252..20514327 | 9..88 | 95 | -> | Plus |
arm_3L | 20514515..20514684 | 89..258 | 100 | -> | Plus |
arm_3L | 20514760..20514877 | 259..376 | 100 | -> | Plus |
arm_3L | 20515255..20515383 | 377..505 | 100 | | Plus |
BO13796.complete Sequence
524 bp assembled on 2008-08-15
> BO13796.complete
GAAGTTATCAGTCGACATGGACAAGTTGCGCCGCGTTCTGAGTGGAGATG
AGCCCACTCCGGAGGAGGAGAGCAGTATCATTACGCAGATCAACGACATG
TCCACTTTGAGCTGGTCCACTCGGATCAAGGGATTCGTCATCTGCTTTGC
CTTGGGCATCTTACTTTCCCTACTCGGCTCGGTCGCCCTATTTCTGCACA
GGGGCATTGTGGTCTTTGCGGTCTTCTACACTCTAGGAAACGTCATCTCG
ATGGCCAGTACCTGCTTTCTCATGGGTCCCTTCAAGCAGATCAAGAAAAT
GTTTGCGGAAACACGGCTGATCGCCACCATCATCGTGCTCGTCATGATGG
TCCTGACGTTCATCGCTGCTATTGTGTGGAAAAAGGCGGGACTCACGCTT
ATATTCATTATCATACAATCTCTGGCCATGACCTGGTACTCGCTGTCGTA
CATCCCCTACGCCCGCGATGCGGTCAAGAAGACCATGTCGGCAATTCTGG
AGGTCGCAAGCCTTTCTAGACCAT
BO13796.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:46:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5104-RB | 492 | CG5104-PB | 1..489 | 17..505 | 2445 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:46:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5104-RB | 787 | CG5104-RB | 148..636 | 17..505 | 2445 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:46:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 20521408..20521584 | 82..258 | 885 | 100 | Plus |
3L | 28110227 | 3L | 20522154..20522283 | 376..505 | 650 | 100 | Plus |
3L | 28110227 | 3L | 20521657..20521777 | 256..376 | 605 | 100 | Plus |
3L | 28110227 | 3L | 20521156..20521227 | 17..88 | 360 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:46:06 has no hits.
BO13796.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:45:46 Download gff for
BO13796.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5104-RB | 144..636 | 9..505 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:32:41 Download gff for
BO13796.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5104-RB | 148..636 | 17..507 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 10:58:18 Download gff for
BO13796.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5104-RB | 148..636 | 17..507 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:26:04 Download gff for
BO13796.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5104-RB | 148..636 | 17..507 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:26:04 Download gff for
BO13796.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 20521156..20521227 | 17..88 | 100 | -> | Plus |
3L | 20521415..20521584 | 89..258 | 100 | -> | Plus |
3L | 20521660..20521777 | 259..376 | 100 | -> | Plus |
3L | 20522155..20522283 | 377..507 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:32:41 Download gff for
BO13796.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 20514256..20514327 | 17..88 | 100 | -> | Plus |
arm_3L | 20514515..20514684 | 89..258 | 100 | -> | Plus |
arm_3L | 20514760..20514877 | 259..376 | 100 | -> | Plus |
arm_3L | 20515255..20515383 | 377..507 | 98 | | Plus |
BO13796.pep Sequence
Translation from 16 to 523
> BO13796.pep
MDKLRRVLSGDEPTPEEESSIITQINDMSTLSWSTRIKGFVICFALGILL
SLLGSVALFLHRGIVVFAVFYTLGNVISMASTCFLMGPFKQIKKMFAETR
LIATIIVLVMMVLTFIAAIVWKKAGLTLIFIIIQSLAMTWYSLSYIPYAR
DAVKKTMSAILEVASLSRP
BO13796.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:22:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5104-PB | 163 | CG5104-PB | 1..163 | 1..163 | 804 | 100 | Plus |
CG33635-PA | 199 | CG33635-PA | 40..180 | 15..154 | 170 | 31.2 | Plus |