Clone BO13796 Report

Search the DGRC for BO13796

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:137
Well:96
Vector:pDNR-Dual
Associated Gene/TranscriptCG5104-RB
Protein status:BO13796.pep: Imported from assembly
Sequenced Size:524

Clone Sequence Records

BO13796.3prime Sequence

522 bp (521 high quality bases) assembled on 2006-05-08

> BO13796.3prime
ATGGTCTAGAAAGGCTTGCGACCTCCAGAATTGCCGACATGGTCTTCTTG
ACCGCATCGCGGGCGTAGGGGATGTACGACAGCGAGTACCAGGTCATGGC
CAGAGATTGTATGATAATGAATATAAGCGTGAGTCCCGCCTTTTTCCACA
CAATAGCAGCGATGAACGTCAGGACCATCATGACGAGCACGATGATGGTG
GCGATCAGCCGTGTTTCCGCAAACATTTTCTTGATCTGCTTGAAGGGACC
CATGAGAAAGCAGGTACTGGCCATCGAGATGACGTTTCCTAGAGTGTAGA
AGACCGCAAAGACCACAATGCCCCTGTGCAGAAATAGGGCGACCGAGCCG
AGTAGGGAAAGTAAGATGCCCAAGGCAAAGCAGATGACGAATCCCTTGAT
CCGAGTGGACCAGCTCAAAGTGGACATGTCGTTGATCTGCGTAATGATAC
TGCTCTCCTCCTCCGGAGTGGGCTCATCTCCACTCAGAACGCGGCGCAAC
TTGTCCATGTCGACTGATAACT

BO13796.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:10:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG5104-PB 492 CG5104-RB 1..489 508..20 2445 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:41:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG5104-RB 787 CG5104-RB 148..636 508..20 2445 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:41:52
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 20521408..20521584 443..267 885 100 Minus
3L 28110227 3L 20522154..20522283 149..20 650 100 Minus
3L 28110227 3L 20521657..20521777 269..149 605 100 Minus
3L 28110227 3L 20521156..20521227 508..437 360 100 Minus
Blast to na_te.dros performed on 2015-02-10 15:41:55 has no hits.

BO13796.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:12:36 Download gff for BO13796.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5104-PB 1..492 19..508 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:02:10 Download gff for BO13796.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5104-PB 1..492 19..508 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 23:16:43 Download gff for BO13796.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5104-RB 144..636 20..516 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:25:19 Download gff for BO13796.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5104-RB 144..636 20..516 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:25:19 Download gff for BO13796.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 20521152..20521227 437..516 95 -> Minus
3L 20521415..20521584 267..436 100 -> Minus
3L 20521660..20521777 149..266 100 -> Minus
3L 20522155..20522283 20..148 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 23:16:43 Download gff for BO13796.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 20514252..20514327 437..516 95 -> Minus
arm_3L 20514515..20514684 267..436 100 -> Minus
arm_3L 20514760..20514877 149..266 100 -> Minus
arm_3L 20515255..20515383 20..148 100   Minus

BO13796.5prime Sequence

522 bp (521 high quality bases) assembled on 2006-05-08

> BO13796.5prime
GAAGTTATCAGTCGACATGGACAAGTTGCGCCGCGTTCTGAGTGGAGATG
AGCCCACTCCGGAGGAGGAGAGCAGTATCATTACGCAGATCAACGACATG
TCCACTTTGAGCTGGTCCACTCGGATCAAGGGATTCGTCATCTGCTTTGC
CTTGGGCATCTTACTTTCCCTACTCGGCTCGGTCGCCCTATTTCTGCACA
GGGGCATTGTGGTCTTTGCGGTCTTCTACACTCTAGGAAACGTCATCTCG
ATGGCCAGTACCTGCTTTCTCATGGGTCCCTTCAAGCAGATCAAGAAAAT
GTTTGCGGAAACACGGCTGATCGCCACCATCATCGTGCTCGTCATGATGG
TCCTGACGTTCATCGCTGCTATTGTGTGGAAAAAGGCGGGACTCACGCTT
ATATTCATTATCATACAATCTCTGGCCATGACCTGGTACTCGCTGTCGTA
CATCCCCTACGCCCGCGATGCGGTCAAGAAGACCATGTCGGCAATTCTGG
AGGTCGCAAGCCTTTCTAGACC

BO13796.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:10:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG5104-PB 492 CG5104-RB 1..489 17..505 2445 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 23:44:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG5104-RB 787 CG5104-RB 148..636 17..505 2445 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 23:44:18
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 20521408..20521584 82..258 885 100 Plus
3L 28110227 3L 20522154..20522283 376..505 650 100 Plus
3L 28110227 3L 20521657..20521777 256..376 605 100 Plus
3L 28110227 3L 20521156..20521227 17..88 360 100 Plus
Blast to na_te.dros performed on 2015-02-09 23:44:21 has no hits.

BO13796.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:12:37 Download gff for BO13796.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5104-PB 1..492 17..506 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:02:12 Download gff for BO13796.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5104-PB 1..492 17..506 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:30:04 Download gff for BO13796.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5104-RB 144..636 9..505 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 00:57:53 Download gff for BO13796.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5104-RB 144..636 9..505 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 00:57:53 Download gff for BO13796.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 20521152..20521227 9..88 95 -> Plus
3L 20521415..20521584 89..258 100 -> Plus
3L 20521660..20521777 259..376 100 -> Plus
3L 20522155..20522283 377..505 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:30:04 Download gff for BO13796.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 20514252..20514327 9..88 95 -> Plus
arm_3L 20514515..20514684 89..258 100 -> Plus
arm_3L 20514760..20514877 259..376 100 -> Plus
arm_3L 20515255..20515383 377..505 100   Plus

BO13796.complete Sequence

524 bp assembled on 2008-08-15

> BO13796.complete
GAAGTTATCAGTCGACATGGACAAGTTGCGCCGCGTTCTGAGTGGAGATG
AGCCCACTCCGGAGGAGGAGAGCAGTATCATTACGCAGATCAACGACATG
TCCACTTTGAGCTGGTCCACTCGGATCAAGGGATTCGTCATCTGCTTTGC
CTTGGGCATCTTACTTTCCCTACTCGGCTCGGTCGCCCTATTTCTGCACA
GGGGCATTGTGGTCTTTGCGGTCTTCTACACTCTAGGAAACGTCATCTCG
ATGGCCAGTACCTGCTTTCTCATGGGTCCCTTCAAGCAGATCAAGAAAAT
GTTTGCGGAAACACGGCTGATCGCCACCATCATCGTGCTCGTCATGATGG
TCCTGACGTTCATCGCTGCTATTGTGTGGAAAAAGGCGGGACTCACGCTT
ATATTCATTATCATACAATCTCTGGCCATGACCTGGTACTCGCTGTCGTA
CATCCCCTACGCCCGCGATGCGGTCAAGAAGACCATGTCGGCAATTCTGG
AGGTCGCAAGCCTTTCTAGACCAT

BO13796.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:46:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG5104-RB 492 CG5104-PB 1..489 17..505 2445 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:46:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG5104-RB 787 CG5104-RB 148..636 17..505 2445 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:46:05
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 20521408..20521584 82..258 885 100 Plus
3L 28110227 3L 20522154..20522283 376..505 650 100 Plus
3L 28110227 3L 20521657..20521777 256..376 605 100 Plus
3L 28110227 3L 20521156..20521227 17..88 360 100 Plus
Blast to na_te.dros performed on 2014-11-27 13:46:06 has no hits.

BO13796.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:45:46 Download gff for BO13796.complete
Subject Subject Range Query Range Percent Splice Strand
CG5104-RB 144..636 9..505 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:32:41 Download gff for BO13796.complete
Subject Subject Range Query Range Percent Splice Strand
CG5104-RB 148..636 17..507 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 10:58:18 Download gff for BO13796.complete
Subject Subject Range Query Range Percent Splice Strand
CG5104-RB 148..636 17..507 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:26:04 Download gff for BO13796.complete
Subject Subject Range Query Range Percent Splice Strand
CG5104-RB 148..636 17..507 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:26:04 Download gff for BO13796.complete
Subject Subject Range Query Range Percent Splice Strand
3L 20521156..20521227 17..88 100 -> Plus
3L 20521415..20521584 89..258 100 -> Plus
3L 20521660..20521777 259..376 100 -> Plus
3L 20522155..20522283 377..507 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:32:41 Download gff for BO13796.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 20514256..20514327 17..88 100 -> Plus
arm_3L 20514515..20514684 89..258 100 -> Plus
arm_3L 20514760..20514877 259..376 100 -> Plus
arm_3L 20515255..20515383 377..507 98   Plus

BO13796.pep Sequence

Translation from 16 to 523

> BO13796.pep
MDKLRRVLSGDEPTPEEESSIITQINDMSTLSWSTRIKGFVICFALGILL
SLLGSVALFLHRGIVVFAVFYTLGNVISMASTCFLMGPFKQIKKMFAETR
LIATIIVLVMMVLTFIAAIVWKKAGLTLIFIIIQSLAMTWYSLSYIPYAR
DAVKKTMSAILEVASLSRP

BO13796.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:22:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG5104-PB 163 CG5104-PB 1..163 1..163 804 100 Plus
CG33635-PA 199 CG33635-PA 40..180 15..154 170 31.2 Plus