Clone Sequence Records
BO13801.3prime Sequence
789 bp (625 high quality bases) assembled on 2006-05-08
> BO13801.3prime
ATGGTCTAGAAAGCTTGCTTTTCCAGTGCGACTTTGATAGTTTGCCGCAC
CCCCTTGTTCGTTCTCATTGCTCAGTGCAAAACTGGCACTTAGAACGCGT
CCTTGTTTGTCCACGATTGTGGTGACCACCTGGCCATCCTCCTCTTTGAT
GTCCGCGACAGTGAGATCCACCTTTGCCAAAAAGTCATCGATTGTCGAGT
CAGTTCCGTCGCCTTTGGGTGCGAGCGTGGGCAGCGGGACCGAACTTCGC
TCGGTTGATGTTGGTTCTGGGACTGGAACCCATATGGGCTCCGTATCCTT
CAAGTTTGGGGGTGCCAGGGTAGGCAAAGTTACGATAGGCCGGTGTGTGG
ATGTTGGATTTGGCAGCCATCTATCACTATCCGATTCACTATTGGGAATG
TGTTCATTTTCTTTGGGGACGTCTTGAGGGCGTAAATTCCACGCATCCTG
CTCATTTACCCGCGGATCTTCTCGGCGAGGATTATTTTCATTACTGCGAT
CTTCTTCGGGAGGAATACGTTGCGGCTTAAATTCCGGGATAAACGGAAAA
TTTTGGAAGACGTTATAGTCAGGAAAACCAAAACCGACCGGGTTTAGAAA
GGGATTATTGTAGACACTGCCAAGTCGTAATGTCGGTTGAAACTGGCTAA
GTAAACATTCCAATTTTCCTTGAGCTTGCAAGAGCATGACTTCCGTTCTC
CTTATGAGTTCCTCTTCGTTGGGGCTCAACATGTAAGTTTCCCTAATCAC
CTCACCGCACGGTTTAGTTTTTGTAACTATCCACGGCCT
BO13801.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:10:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31769-PA | 936 | CG31769-RA | 163..933 | 789..19 | 3830 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 04:16:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31769-RA | 1086 | CG31769-RA | 217..987 | 789..19 | 3840 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 04:16:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 14109696..14110466 | 19..789 | 3840 | 99.9 | Plus |
Blast to na_te.dros performed on 2015-02-01 04:16:40 has no hits.
BO13801.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:12:38 Download gff for
BO13801.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31769-PA | 163..936 | 16..789 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:02:13 Download gff for
BO13801.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31769-PA | 163..936 | 16..789 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 15:03:37 Download gff for
BO13801.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31769-RA | 217..987 | 19..789 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 05:45:32 Download gff for
BO13801.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31769-RA | 217..987 | 19..789 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 05:45:32 Download gff for
BO13801.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 14109696..14110466 | 19..789 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 15:03:37 Download gff for
BO13801.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 14109696..14110466 | 19..789 | 99 | | Plus |
BO13801.5prime Sequence
829 bp (808 high quality bases) assembled on 2006-05-08
> BO13801.5prime
GAAGTTATCACTCGACATGAATTTCGAAAGTCATCTGATTGTTTGCATTA
GTTTGCTTCTTCAATTACGGATGGGAGCAACTATGCCTATGGAACGGCCA
CTCCCCCCCTCTGTGTATGCACAGGCTAGGCATTGGAACGTGCTTGAAAC
AGTCGTAAATAATATGCGGATCACTAAAAGGCCGTGGATAGTTACAAAAA
CTAAACCGTGCGGTGAGGTGATTAGGGAAACCTACATGTTGAGCCCCAAC
GAAGAGGAACTCATAAGGAGAACGGAAGTCATGCTCTTGCAAGCTCAAGG
AAAATTGGAATGTTTACTTAGCCAGTTTCAACCGACATTACGACTTGGCA
GTGTCTACAATAATCCCTTTCTAAACCCGGTCGGTTTTGGTTTTCCTGAC
TATAACGTCTTCCAAAATTTTCCGTTTATCCCGGAATTTAAGCCGCAACG
TATTCCTCCCGAAGAAGATCGCAGTAATGAAAATAATCCTCGCCGAGAAG
ATCCGCGGGTAAATGAGCAGGATGCGTGGAATTTACGCCCTCAAGACGTC
CCCAAAGAAAATGAACACATTCCCAATAGTGAATCGGATAGTGATAGATG
GCTGCCAAATCCAACATCCACACACCGGCCTATCGTAACTTTGCCTACCC
TGGCACCCCCAAACTTGAAGGATACGGAGCCCATATGGGTTCCAGTCCCA
GAACCAACATCAACCGAGCGAAGTTCGGTCCCGCTGCCCACGCTCGCACC
CAAAGGCGACGGAACTGACTCGACAATCGATGACTTTTTGGCAAAGGTGG
ATCTCACTGTCCCGGACTCAAAGAGGAGG
BO13801.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:10:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31769-PA | 936 | CG31769-RA | 1..801 | 17..817 | 3980 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:21:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31769-RA | 1086 | CG31769-RA | 55..868 | 17..829 | 4030 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:21:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 14109815..14110575 | 829..70 | 3740 | 99.7 | Minus |
2L | 23513712 | 2L | 14110632..14110685 | 70..17 | 270 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 06:21:04 has no hits.
BO13801.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:12:39 Download gff for
BO13801.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31769-PA | 1..814 | 17..829 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:02:14 Download gff for
BO13801.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31769-PA | 1..814 | 17..829 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:02:31 Download gff for
BO13801.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31769-RA | 49..868 | 9..829 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:05:03 Download gff for
BO13801.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31769-RA | 49..868 | 9..829 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:05:03 Download gff for
BO13801.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 14109815..14110574 | 71..829 | 99 | <- | Minus |
2L | 14110632..14110691 | 9..70 | 93 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:02:31 Download gff for
BO13801.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 14109815..14110574 | 71..829 | 99 | <- | Minus |
arm_2L | 14110632..14110691 | 9..70 | 93 | | Minus |
BO13801.complete Sequence
967 bp assembled on 2011-06-28
GenBank Submission: KX799933
> BO13801.complete
GAAGTTATCACTCGACATGAATTTCGAAAGTCATCTGATTGTTTGCATTA
GTTTGCTTCTTCAATTACGGATGGGAGCAACTATGCCTATGGAACGGCCA
CTCCCCCCCTCTGTGTATGCACAGGCTAGGCATTGGAACGTGCTTGAAAC
AGTCGTAAATAATATGCGGATCACTAAAAGGCCGTGGATAGTTACAAAAA
CTAAACCGTGCGGTGAGGTGATTAGGGAAACCTACATGTTGAGCCCCAAC
GAAGAGGAACTCATAAGGAGAACGGAAGTCATGCTCTTGCAAGCTCAAGG
AAAATTGGAATGTTTACTTAGCCAGTTTCAACCGACATTACGACTTGGCA
GTGTCTACAATAATCCCTTTCTAAACCCGGTCGGTTTTGGTTTTCCTGAC
TATAACGTCTTCCAAAATTTTCCGTTTATCCCGGAATTTAAGCCGCAACG
TATTCCTCCCGAAGAAGATCGCAGTAATGAAAATAATCCTCGCCGAGAAG
ATCCGCGGGTAAATGAGCAGGATGCGTGGAATTTACGCCCTCAAGACGTC
CCCAAAGAAAATGAACACATTCCCAATAGTGAATCGGATAGTGATAGATG
GCTGCCAAATCCAACATCCACACACCGGCCTATCGTAACTTTGCCTACCC
TGGCACCCCCAAACTTGAAGGATACGGAGCCCATATGGGTTCCAGTCCCA
GAACCAACATCAACCGAGCGAAGTTCGGTCCCGCTGCCCACGCTCGCACC
CAAAGGCGACGGAACTGACTCGACAATCGATGACTTTTTGGCAAAGGTGG
ATCTCACTGTCGCGGACATCAAAGAGGAGGATGGCCAGGTGGTCACCACA
ATCGTGGACAAACAAGGACGCGTTCTAAGTGCCAGTTTTGCACTGAGCAA
TGAGAACGAACAAGGGGGTGCGGCAAACTATCAAAGTCGCACTGGAAAAG
CAAGCTTTCTAGACCAT
BO13801.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:06:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31769-RA | 936 | CG31769-PA | 1..933 | 17..949 | 4665 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:06:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31769-RA | 1086 | CG31769-RA | 55..987 | 17..949 | 4665 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:06:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 14109696..14110575 | 949..70 | 4400 | 100 | Minus |
2L | 23513712 | 2L | 14110632..14110685 | 70..17 | 270 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 16:06:36 has no hits.
BO13801.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-06-28 12:16:07 Download gff for
BO13801.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31769-RA | 55..983 | 17..945 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:52:32 Download gff for
BO13801.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31769-RA | 55..983 | 17..945 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:11:24 Download gff for
BO13801.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31769-RA | 55..983 | 17..945 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:11:24 Download gff for
BO13801.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 14109700..14110574 | 71..945 | 100 | <- | Minus |
2L | 14110632..14110685 | 17..70 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:52:32 Download gff for
BO13801.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 14109700..14110574 | 71..945 | 100 | <- | Minus |
arm_2L | 14110632..14110685 | 17..70 | 100 | | Minus |
BO13801.pep Sequence
Translation from 16 to 967
> BO13801.pep
MNFESHLIVCISLLLQLRMGATMPMERPLPPSVYAQARHWNVLETVVNNM
RITKRPWIVTKTKPCGEVIRETYMLSPNEEELIRRTEVMLLQAQGKLECL
LSQFQPTLRLGSVYNNPFLNPVGFGFPDYNVFQNFPFIPEFKPQRIPPEE
DRSNENNPRREDPRVNEQDAWNLRPQDVPKENEHIPNSESDSDRWLPNPT
STHRPIVTLPTLAPPNLKDTEPIWVPVPEPTSTERSSVPLPTLAPKGDGT
DSTIDDFLAKVDLTVADIKEEDGQVVTTIVDKQGRVLSASFALSNENEQG
GAANYQSRTGKASFLDH
BO13801.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:49:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31769-PA | 311 | CG31769-PA | 1..311 | 1..311 | 1652 | 100 | Plus |
CG15293-PC | 333 | CG15293-PC | 1..318 | 1..295 | 226 | 26.2 | Plus |
CG15293-PA | 333 | CG15293-PA | 1..318 | 1..295 | 226 | 26.2 | Plus |