Clone BO13801 Report

Search the DGRC for BO13801

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:138
Well:1
Vector:pDNR-Dual
Associated Gene/TranscriptCG31769-RA
Protein status:BO13801.pep: Imported from assembly
Sequenced Size:967

Clone Sequence Records

BO13801.3prime Sequence

789 bp (625 high quality bases) assembled on 2006-05-08

> BO13801.3prime
ATGGTCTAGAAAGCTTGCTTTTCCAGTGCGACTTTGATAGTTTGCCGCAC
CCCCTTGTTCGTTCTCATTGCTCAGTGCAAAACTGGCACTTAGAACGCGT
CCTTGTTTGTCCACGATTGTGGTGACCACCTGGCCATCCTCCTCTTTGAT
GTCCGCGACAGTGAGATCCACCTTTGCCAAAAAGTCATCGATTGTCGAGT
CAGTTCCGTCGCCTTTGGGTGCGAGCGTGGGCAGCGGGACCGAACTTCGC
TCGGTTGATGTTGGTTCTGGGACTGGAACCCATATGGGCTCCGTATCCTT
CAAGTTTGGGGGTGCCAGGGTAGGCAAAGTTACGATAGGCCGGTGTGTGG
ATGTTGGATTTGGCAGCCATCTATCACTATCCGATTCACTATTGGGAATG
TGTTCATTTTCTTTGGGGACGTCTTGAGGGCGTAAATTCCACGCATCCTG
CTCATTTACCCGCGGATCTTCTCGGCGAGGATTATTTTCATTACTGCGAT
CTTCTTCGGGAGGAATACGTTGCGGCTTAAATTCCGGGATAAACGGAAAA
TTTTGGAAGACGTTATAGTCAGGAAAACCAAAACCGACCGGGTTTAGAAA
GGGATTATTGTAGACACTGCCAAGTCGTAATGTCGGTTGAAACTGGCTAA
GTAAACATTCCAATTTTCCTTGAGCTTGCAAGAGCATGACTTCCGTTCTC
CTTATGAGTTCCTCTTCGTTGGGGCTCAACATGTAAGTTTCCCTAATCAC
CTCACCGCACGGTTTAGTTTTTGTAACTATCCACGGCCT

BO13801.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:10:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG31769-PA 936 CG31769-RA 163..933 789..19 3830 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 04:16:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG31769-RA 1086 CG31769-RA 217..987 789..19 3840 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 04:16:37
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 14109696..14110466 19..789 3840 99.9 Plus
Blast to na_te.dros performed on 2015-02-01 04:16:40 has no hits.

BO13801.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:12:38 Download gff for BO13801.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31769-PA 163..936 16..789 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:02:13 Download gff for BO13801.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31769-PA 163..936 16..789 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 15:03:37 Download gff for BO13801.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31769-RA 217..987 19..789 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 05:45:32 Download gff for BO13801.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31769-RA 217..987 19..789 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 05:45:32 Download gff for BO13801.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 14109696..14110466 19..789 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 15:03:37 Download gff for BO13801.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 14109696..14110466 19..789 99   Plus

BO13801.5prime Sequence

829 bp (808 high quality bases) assembled on 2006-05-08

> BO13801.5prime
GAAGTTATCACTCGACATGAATTTCGAAAGTCATCTGATTGTTTGCATTA
GTTTGCTTCTTCAATTACGGATGGGAGCAACTATGCCTATGGAACGGCCA
CTCCCCCCCTCTGTGTATGCACAGGCTAGGCATTGGAACGTGCTTGAAAC
AGTCGTAAATAATATGCGGATCACTAAAAGGCCGTGGATAGTTACAAAAA
CTAAACCGTGCGGTGAGGTGATTAGGGAAACCTACATGTTGAGCCCCAAC
GAAGAGGAACTCATAAGGAGAACGGAAGTCATGCTCTTGCAAGCTCAAGG
AAAATTGGAATGTTTACTTAGCCAGTTTCAACCGACATTACGACTTGGCA
GTGTCTACAATAATCCCTTTCTAAACCCGGTCGGTTTTGGTTTTCCTGAC
TATAACGTCTTCCAAAATTTTCCGTTTATCCCGGAATTTAAGCCGCAACG
TATTCCTCCCGAAGAAGATCGCAGTAATGAAAATAATCCTCGCCGAGAAG
ATCCGCGGGTAAATGAGCAGGATGCGTGGAATTTACGCCCTCAAGACGTC
CCCAAAGAAAATGAACACATTCCCAATAGTGAATCGGATAGTGATAGATG
GCTGCCAAATCCAACATCCACACACCGGCCTATCGTAACTTTGCCTACCC
TGGCACCCCCAAACTTGAAGGATACGGAGCCCATATGGGTTCCAGTCCCA
GAACCAACATCAACCGAGCGAAGTTCGGTCCCGCTGCCCACGCTCGCACC
CAAAGGCGACGGAACTGACTCGACAATCGATGACTTTTTGGCAAAGGTGG
ATCTCACTGTCCCGGACTCAAAGAGGAGG

BO13801.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:10:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG31769-PA 936 CG31769-RA 1..801 17..817 3980 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:21:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG31769-RA 1086 CG31769-RA 55..868 17..829 4030 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:21:01
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 14109815..14110575 829..70 3740 99.7 Minus
2L 23513712 2L 14110632..14110685 70..17 270 100 Minus
Blast to na_te.dros performed on 2015-02-12 06:21:04 has no hits.

BO13801.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:12:39 Download gff for BO13801.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31769-PA 1..814 17..829 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:02:14 Download gff for BO13801.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31769-PA 1..814 17..829 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:02:31 Download gff for BO13801.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31769-RA 49..868 9..829 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:05:03 Download gff for BO13801.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31769-RA 49..868 9..829 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:05:03 Download gff for BO13801.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 14109815..14110574 71..829 99 <- Minus
2L 14110632..14110691 9..70 93   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:02:31 Download gff for BO13801.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 14109815..14110574 71..829 99 <- Minus
arm_2L 14110632..14110691 9..70 93   Minus

BO13801.complete Sequence

967 bp assembled on 2011-06-28

GenBank Submission: KX799933

> BO13801.complete
GAAGTTATCACTCGACATGAATTTCGAAAGTCATCTGATTGTTTGCATTA
GTTTGCTTCTTCAATTACGGATGGGAGCAACTATGCCTATGGAACGGCCA
CTCCCCCCCTCTGTGTATGCACAGGCTAGGCATTGGAACGTGCTTGAAAC
AGTCGTAAATAATATGCGGATCACTAAAAGGCCGTGGATAGTTACAAAAA
CTAAACCGTGCGGTGAGGTGATTAGGGAAACCTACATGTTGAGCCCCAAC
GAAGAGGAACTCATAAGGAGAACGGAAGTCATGCTCTTGCAAGCTCAAGG
AAAATTGGAATGTTTACTTAGCCAGTTTCAACCGACATTACGACTTGGCA
GTGTCTACAATAATCCCTTTCTAAACCCGGTCGGTTTTGGTTTTCCTGAC
TATAACGTCTTCCAAAATTTTCCGTTTATCCCGGAATTTAAGCCGCAACG
TATTCCTCCCGAAGAAGATCGCAGTAATGAAAATAATCCTCGCCGAGAAG
ATCCGCGGGTAAATGAGCAGGATGCGTGGAATTTACGCCCTCAAGACGTC
CCCAAAGAAAATGAACACATTCCCAATAGTGAATCGGATAGTGATAGATG
GCTGCCAAATCCAACATCCACACACCGGCCTATCGTAACTTTGCCTACCC
TGGCACCCCCAAACTTGAAGGATACGGAGCCCATATGGGTTCCAGTCCCA
GAACCAACATCAACCGAGCGAAGTTCGGTCCCGCTGCCCACGCTCGCACC
CAAAGGCGACGGAACTGACTCGACAATCGATGACTTTTTGGCAAAGGTGG
ATCTCACTGTCGCGGACATCAAAGAGGAGGATGGCCAGGTGGTCACCACA
ATCGTGGACAAACAAGGACGCGTTCTAAGTGCCAGTTTTGCACTGAGCAA
TGAGAACGAACAAGGGGGTGCGGCAAACTATCAAAGTCGCACTGGAAAAG
CAAGCTTTCTAGACCAT

BO13801.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:06:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG31769-RA 936 CG31769-PA 1..933 17..949 4665 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:06:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG31769-RA 1086 CG31769-RA 55..987 17..949 4665 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:06:34
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 14109696..14110575 949..70 4400 100 Minus
2L 23513712 2L 14110632..14110685 70..17 270 100 Minus
Blast to na_te.dros performed on 2014-11-26 16:06:36 has no hits.

BO13801.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-06-28 12:16:07 Download gff for BO13801.complete
Subject Subject Range Query Range Percent Splice Strand
CG31769-RA 55..983 17..945 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:52:32 Download gff for BO13801.complete
Subject Subject Range Query Range Percent Splice Strand
CG31769-RA 55..983 17..945 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:11:24 Download gff for BO13801.complete
Subject Subject Range Query Range Percent Splice Strand
CG31769-RA 55..983 17..945 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:11:24 Download gff for BO13801.complete
Subject Subject Range Query Range Percent Splice Strand
2L 14109700..14110574 71..945 100 <- Minus
2L 14110632..14110685 17..70 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:52:32 Download gff for BO13801.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 14109700..14110574 71..945 100 <- Minus
arm_2L 14110632..14110685 17..70 100   Minus

BO13801.pep Sequence

Translation from 16 to 967

> BO13801.pep
MNFESHLIVCISLLLQLRMGATMPMERPLPPSVYAQARHWNVLETVVNNM
RITKRPWIVTKTKPCGEVIRETYMLSPNEEELIRRTEVMLLQAQGKLECL
LSQFQPTLRLGSVYNNPFLNPVGFGFPDYNVFQNFPFIPEFKPQRIPPEE
DRSNENNPRREDPRVNEQDAWNLRPQDVPKENEHIPNSESDSDRWLPNPT
STHRPIVTLPTLAPPNLKDTEPIWVPVPEPTSTERSSVPLPTLAPKGDGT
DSTIDDFLAKVDLTVADIKEEDGQVVTTIVDKQGRVLSASFALSNENEQG
GAANYQSRTGKASFLDH

BO13801.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:49:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG31769-PA 311 CG31769-PA 1..311 1..311 1652 100 Plus
CG15293-PC 333 CG15293-PC 1..318 1..295 226 26.2 Plus
CG15293-PA 333 CG15293-PA 1..318 1..295 226 26.2 Plus