Clone Sequence Records
BO13802.3prime Sequence
560 bp (559 high quality bases) assembled on 2006-05-08
> BO13802.3prime
ATGGTCTAGAAAGCTTGCTATATATACTCTCTTGTCCAGCCCTGAATAAT
TTAGCTGACAAACATTTTCGCAAATAAAATTGTGTTTCCGTTGGCAAGGT
TCACTATGCCAGAGATTGTCTGTTCCCAAGACCAGGCAGGCGTCTTGACC
TGTTCGATCAGACTTGGGCTCTCTCCGGCTCCATTGTGCGTAGGTAACGG
GAATGCCAGTGCTCATCCAGGTCCAGAAATAGCTCCGATCCACCAGGTTT
GTGGCGCCCAACCAAAAGGTTCTGTTTCCAAATATCCGTTCTTTCCTGTT
GACGTAGTGAAGCATTAGCTGATGCTGCTCCTCATTTCTGACAGTAGCTA
GGACTGCTCCAACTCTATTGCATACATGGTTAGCTTCAAGCCAGTTTACT
TCAGCAAAACCTGCCACTGAAAAATATGCATTGCACTGAAGAAGCGGATT
GCACTTTTGATAAAAAGTCAAATCGGTATTGTTGATGTTGCTGGATGCTA
TTACCAAGAAAGGTAAGCTAAAGATAGTGAACAGTATGGTAACCATGTCG
ACTGATAACT
BO13802.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:10:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11211-PA | 531 | CG11211-RA | 1..528 | 546..19 | 2615 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:01:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11211-RA | 593 | CG11211-RA | 7..535 | 547..19 | 2630 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 07:01:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 6180984..6181257 | 19..292 | 1355 | 99.6 | Plus |
2R | 25286936 | 2R | 6181469..6181620 | 396..547 | 760 | 100 | Plus |
2R | 25286936 | 2R | 6181307..6181415 | 291..399 | 545 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-03 07:01:28 has no hits.
BO13802.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:12:40 Download gff for
BO13802.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11211-PA | 1..531 | 15..546 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:02:17 Download gff for
BO13802.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11211-PA | 1..531 | 15..546 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:26:52 Download gff for
BO13802.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11211-RA | 1..542 | 11..553 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 09:42:28 Download gff for
BO13802.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11211-RA | 1..542 | 11..553 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 09:42:28 Download gff for
BO13802.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 6180977..6181255 | 11..290 | 98 | <- | Plus |
2R | 6181307..6181415 | 291..399 | 100 | <- | Plus |
2R | 6181473..6181620 | 400..547 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:26:52 Download gff for
BO13802.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 2068482..2068760 | 11..290 | 98 | <- | Plus |
arm_2R | 2068812..2068920 | 291..399 | 100 | <- | Plus |
arm_2R | 2068978..2069125 | 400..547 | 100 | | Plus |
BO13802.5prime Sequence
560 bp (559 high quality bases) assembled on 2006-05-08
> BO13802.5prime
GAAGTTATCAGTCGACATGGTTACCATACTGTTCACTATCTTTAGCTTAC
CTTTCTTGGTAATAGCATCCAGCAACATCAACAATACCGATTTGACTTTT
TATCAAAAGTGCAATCCGCTTCTTCAGTGCAATGCATATTTTTCAGTGGC
AGGTTTTGCTGAAGTAAACTGGCTTGAAGCTAACCATGTATGCAATAGAG
TTGGAGCAGTCCTAGCTACTGTCAGAAATGAGGAGCAGCATCAGCTAATG
CTTCACTACGTCAACAGGAAAGAACGGATATTTGGAAACAGAACCTTTTG
GTTGGGCGCCACAAACCTGGTGGATCGGAGCTATTTCTGGACCTGGATGA
GCACTGGCATTCCCGTTACCTACGCACAATGGAGCCGGAGAGAGCCCAAG
TCTGATCGAACAGGTCAAGACGCCTGCCTGGTCTTGGGAACAGACAATCT
CTGGCATAGTGAACCTTGCCAACGGAAACACAATTTTATTTGCGAAAATG
TTTGTCAGCTAAATTATTCAGGGCTGGACAAGAGAGTATATATAGCAAGC
TTTCTAGACC
BO13802.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:10:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11211-PA | 531 | CG11211-RA | 1..528 | 17..544 | 2615 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:20:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11211-RA | 593 | CG11211-RA | 7..535 | 16..544 | 2630 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:20:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 6180984..6181257 | 544..271 | 1355 | 99.6 | Minus |
2R | 25286936 | 2R | 6181469..6181620 | 167..16 | 760 | 100 | Minus |
2R | 25286936 | 2R | 6181307..6181415 | 272..164 | 545 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 06:20:45 has no hits.
BO13802.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:12:41 Download gff for
BO13802.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11211-PA | 1..531 | 17..548 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:02:19 Download gff for
BO13802.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11211-PA | 1..531 | 17..548 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:02:28 Download gff for
BO13802.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11211-RA | 1..542 | 10..552 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:03:27 Download gff for
BO13802.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11211-RA | 1..542 | 10..552 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:03:27 Download gff for
BO13802.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 6180977..6181255 | 273..552 | 98 | <- | Minus |
2R | 6181307..6181415 | 164..272 | 100 | <- | Minus |
2R | 6181473..6181620 | 16..163 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:02:28 Download gff for
BO13802.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 2068482..2068760 | 273..552 | 98 | <- | Minus |
arm_2R | 2068812..2068920 | 164..272 | 100 | <- | Minus |
arm_2R | 2068978..2069125 | 16..163 | 100 | | Minus |
BO13802.complete Sequence
562 bp assembled on 2006-10-11
GenBank Submission: FJ632927
> BO13802.complete
GAAGTTATCAGTCGACATGGTTACCATACTGTTCACTATCTTTAGCTTAC
CTTTCTTGGTAATAGCATCCAGCAACATCAACAATACCGATTTGACTTTT
TATCAAAAGTGCAATCCGCTTCTTCAGTGCAATGCATATTTTTCAGTGGC
AGGTTTTGCTGAAGTAAACTGGCTTGAAGCTAACCATGTATGCAATAGAG
TTGGAGCAGTCCTAGCTACTGTCAGAAATGAGGAGCAGCATCAGCTAATG
CTTCACTACGTCAACAGGAAAGAACGGATATTTGGAAACAGAACCTTTTG
GTTGGGCGCCACAAACCTGGTGGATCGGAGCTATTTCTGGACCTGGATGA
GCACTGGCATTCCCGTTACCTACGCACAATGGAGCCGGAGAGAGCCCAAG
TCTGATCGAACAGGTCAAGACGCCTGCCTGGTCTTGGGAACAGACAATCT
CTGGCATAGTGAACCTTGCCAACGGAAACACAATTTTATTTGCGAAAATG
TTTGTCAGCTAAATTATTCAGGGCTGGACAAGAGAGTATATATAGCAAGC
TTTCTAGACCAT
BO13802.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:35:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11211-RA | 531 | CG11211-PA | 1..528 | 17..544 | 2625 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:35:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11211-RA | 593 | CG11211-RA | 7..535 | 16..544 | 2630 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:35:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 6180984..6181257 | 544..271 | 1355 | 99.6 | Minus |
2R | 25286936 | 2R | 6181469..6181620 | 167..16 | 760 | 100 | Minus |
2R | 25286936 | 2R | 6181307..6181415 | 272..164 | 545 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 15:35:44 has no hits.
BO13802.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:44:55 Download gff for
BO13802.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11211-RA | 1..531 | 17..548 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:58:53 Download gff for
BO13802.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11211-RA | 1..542 | 10..552 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:47:58 Download gff for
BO13802.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11211-RA | 8..535 | 17..546 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:44:55 Download gff for
BO13802.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11211-RA | 1..542 | 10..552 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:11:44 Download gff for
BO13802.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11211-RA | 8..535 | 17..546 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:11:44 Download gff for
BO13802.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 6181473..6181619 | 17..163 | 100 | | Minus |
2R | 6180982..6181255 | 273..546 | 98 | <- | Minus |
2R | 6181307..6181415 | 164..272 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:47:58 Download gff for
BO13802.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 2068487..2068760 | 273..546 | 98 | <- | Minus |
arm_2R | 2068812..2068920 | 164..272 | 100 | <- | Minus |
arm_2R | 2068978..2069124 | 17..163 | 100 | | Minus |
BO13802.pep Sequence
Translation from 16 to 562
> BO13802.pep
MVTILFTIFSLPFLVIASSNINNTDLTFYQKCNPLLQCNAYFSVAGFAEV
NWLEANHVCNRVGAVLATVRNEEQHQLMLHYVNRKERIFGNRTFWLGATN
LVDRSYFWTWMSTGIPVTYAQWSRREPKSDRTGQDACLVLGTDNLWHSEP
CQRKHNFICENVCQLNYSGLDKRVYIASFLDH
BO13802.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:57:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11211-PA | 176 | CG11211-PA | 1..176 | 1..176 | 964 | 100 | Plus |
CG9134-PC | 188 | CG9134-PC | 67..184 | 47..160 | 167 | 28.9 | Plus |
CG9134-PA | 188 | CG9134-PA | 67..184 | 47..160 | 167 | 28.9 | Plus |
CG9134-PB | 376 | CG9134-PB | 255..372 | 47..160 | 167 | 28.9 | Plus |
lectin-21Cb-PB | 249 | CG13686-PB | 116..249 | 20..162 | 158 | 31 | Plus |