Clone BO13802 Report

Search the DGRC for BO13802

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:138
Well:2
Vector:pDNR-Dual
Associated Gene/TranscriptCG11211-RA
Protein status:BO13802.pep: validated full length
Sequenced Size:562

Clone Sequence Records

BO13802.3prime Sequence

560 bp (559 high quality bases) assembled on 2006-05-08

> BO13802.3prime
ATGGTCTAGAAAGCTTGCTATATATACTCTCTTGTCCAGCCCTGAATAAT
TTAGCTGACAAACATTTTCGCAAATAAAATTGTGTTTCCGTTGGCAAGGT
TCACTATGCCAGAGATTGTCTGTTCCCAAGACCAGGCAGGCGTCTTGACC
TGTTCGATCAGACTTGGGCTCTCTCCGGCTCCATTGTGCGTAGGTAACGG
GAATGCCAGTGCTCATCCAGGTCCAGAAATAGCTCCGATCCACCAGGTTT
GTGGCGCCCAACCAAAAGGTTCTGTTTCCAAATATCCGTTCTTTCCTGTT
GACGTAGTGAAGCATTAGCTGATGCTGCTCCTCATTTCTGACAGTAGCTA
GGACTGCTCCAACTCTATTGCATACATGGTTAGCTTCAAGCCAGTTTACT
TCAGCAAAACCTGCCACTGAAAAATATGCATTGCACTGAAGAAGCGGATT
GCACTTTTGATAAAAAGTCAAATCGGTATTGTTGATGTTGCTGGATGCTA
TTACCAAGAAAGGTAAGCTAAAGATAGTGAACAGTATGGTAACCATGTCG
ACTGATAACT

BO13802.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:10:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG11211-PA 531 CG11211-RA 1..528 546..19 2615 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:01:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG11211-RA 593 CG11211-RA 7..535 547..19 2630 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 07:01:24
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 6180984..6181257 19..292 1355 99.6 Plus
2R 25286936 2R 6181469..6181620 396..547 760 100 Plus
2R 25286936 2R 6181307..6181415 291..399 545 100 Plus
Blast to na_te.dros performed on 2015-02-03 07:01:28 has no hits.

BO13802.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:12:40 Download gff for BO13802.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11211-PA 1..531 15..546 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:02:17 Download gff for BO13802.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11211-PA 1..531 15..546 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:26:52 Download gff for BO13802.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11211-RA 1..542 11..553 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 09:42:28 Download gff for BO13802.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11211-RA 1..542 11..553 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 09:42:28 Download gff for BO13802.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 6180977..6181255 11..290 98 <- Plus
2R 6181307..6181415 291..399 100 <- Plus
2R 6181473..6181620 400..547 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:26:52 Download gff for BO13802.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 2068482..2068760 11..290 98 <- Plus
arm_2R 2068812..2068920 291..399 100 <- Plus
arm_2R 2068978..2069125 400..547 100   Plus

BO13802.5prime Sequence

560 bp (559 high quality bases) assembled on 2006-05-08

> BO13802.5prime
GAAGTTATCAGTCGACATGGTTACCATACTGTTCACTATCTTTAGCTTAC
CTTTCTTGGTAATAGCATCCAGCAACATCAACAATACCGATTTGACTTTT
TATCAAAAGTGCAATCCGCTTCTTCAGTGCAATGCATATTTTTCAGTGGC
AGGTTTTGCTGAAGTAAACTGGCTTGAAGCTAACCATGTATGCAATAGAG
TTGGAGCAGTCCTAGCTACTGTCAGAAATGAGGAGCAGCATCAGCTAATG
CTTCACTACGTCAACAGGAAAGAACGGATATTTGGAAACAGAACCTTTTG
GTTGGGCGCCACAAACCTGGTGGATCGGAGCTATTTCTGGACCTGGATGA
GCACTGGCATTCCCGTTACCTACGCACAATGGAGCCGGAGAGAGCCCAAG
TCTGATCGAACAGGTCAAGACGCCTGCCTGGTCTTGGGAACAGACAATCT
CTGGCATAGTGAACCTTGCCAACGGAAACACAATTTTATTTGCGAAAATG
TTTGTCAGCTAAATTATTCAGGGCTGGACAAGAGAGTATATATAGCAAGC
TTTCTAGACC

BO13802.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:10:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG11211-PA 531 CG11211-RA 1..528 17..544 2615 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:20:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG11211-RA 593 CG11211-RA 7..535 16..544 2630 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:20:42
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 6180984..6181257 544..271 1355 99.6 Minus
2R 25286936 2R 6181469..6181620 167..16 760 100 Minus
2R 25286936 2R 6181307..6181415 272..164 545 100 Minus
Blast to na_te.dros performed on 2015-02-12 06:20:45 has no hits.

BO13802.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:12:41 Download gff for BO13802.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11211-PA 1..531 17..548 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:02:19 Download gff for BO13802.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11211-PA 1..531 17..548 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:02:28 Download gff for BO13802.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11211-RA 1..542 10..552 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:03:27 Download gff for BO13802.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11211-RA 1..542 10..552 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:03:27 Download gff for BO13802.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 6180977..6181255 273..552 98 <- Minus
2R 6181307..6181415 164..272 100 <- Minus
2R 6181473..6181620 16..163 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:02:28 Download gff for BO13802.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 2068482..2068760 273..552 98 <- Minus
arm_2R 2068812..2068920 164..272 100 <- Minus
arm_2R 2068978..2069125 16..163 100   Minus

BO13802.complete Sequence

562 bp assembled on 2006-10-11

GenBank Submission: FJ632927

> BO13802.complete
GAAGTTATCAGTCGACATGGTTACCATACTGTTCACTATCTTTAGCTTAC
CTTTCTTGGTAATAGCATCCAGCAACATCAACAATACCGATTTGACTTTT
TATCAAAAGTGCAATCCGCTTCTTCAGTGCAATGCATATTTTTCAGTGGC
AGGTTTTGCTGAAGTAAACTGGCTTGAAGCTAACCATGTATGCAATAGAG
TTGGAGCAGTCCTAGCTACTGTCAGAAATGAGGAGCAGCATCAGCTAATG
CTTCACTACGTCAACAGGAAAGAACGGATATTTGGAAACAGAACCTTTTG
GTTGGGCGCCACAAACCTGGTGGATCGGAGCTATTTCTGGACCTGGATGA
GCACTGGCATTCCCGTTACCTACGCACAATGGAGCCGGAGAGAGCCCAAG
TCTGATCGAACAGGTCAAGACGCCTGCCTGGTCTTGGGAACAGACAATCT
CTGGCATAGTGAACCTTGCCAACGGAAACACAATTTTATTTGCGAAAATG
TTTGTCAGCTAAATTATTCAGGGCTGGACAAGAGAGTATATATAGCAAGC
TTTCTAGACCAT

BO13802.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:35:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG11211-RA 531 CG11211-PA 1..528 17..544 2625 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:35:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG11211-RA 593 CG11211-RA 7..535 16..544 2630 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:35:43
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 6180984..6181257 544..271 1355 99.6 Minus
2R 25286936 2R 6181469..6181620 167..16 760 100 Minus
2R 25286936 2R 6181307..6181415 272..164 545 100 Minus
Blast to na_te.dros performed on 2014-11-27 15:35:44 has no hits.

BO13802.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:44:55 Download gff for BO13802.complete
Subject Subject Range Query Range Percent Splice Strand
CG11211-RA 1..531 17..548 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:58:53 Download gff for BO13802.complete
Subject Subject Range Query Range Percent Splice Strand
CG11211-RA 1..542 10..552 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:47:58 Download gff for BO13802.complete
Subject Subject Range Query Range Percent Splice Strand
CG11211-RA 8..535 17..546 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:44:55 Download gff for BO13802.complete
Subject Subject Range Query Range Percent Splice Strand
CG11211-RA 1..542 10..552 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:11:44 Download gff for BO13802.complete
Subject Subject Range Query Range Percent Splice Strand
CG11211-RA 8..535 17..546 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:11:44 Download gff for BO13802.complete
Subject Subject Range Query Range Percent Splice Strand
2R 6181473..6181619 17..163 100   Minus
2R 6180982..6181255 273..546 98 <- Minus
2R 6181307..6181415 164..272 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:47:58 Download gff for BO13802.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 2068487..2068760 273..546 98 <- Minus
arm_2R 2068812..2068920 164..272 100 <- Minus
arm_2R 2068978..2069124 17..163 100   Minus

BO13802.pep Sequence

Translation from 16 to 562

> BO13802.pep
MVTILFTIFSLPFLVIASSNINNTDLTFYQKCNPLLQCNAYFSVAGFAEV
NWLEANHVCNRVGAVLATVRNEEQHQLMLHYVNRKERIFGNRTFWLGATN
LVDRSYFWTWMSTGIPVTYAQWSRREPKSDRTGQDACLVLGTDNLWHSEP
CQRKHNFICENVCQLNYSGLDKRVYIASFLDH

BO13802.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:57:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG11211-PA 176 CG11211-PA 1..176 1..176 964 100 Plus
CG9134-PC 188 CG9134-PC 67..184 47..160 167 28.9 Plus
CG9134-PA 188 CG9134-PA 67..184 47..160 167 28.9 Plus
CG9134-PB 376 CG9134-PB 255..372 47..160 167 28.9 Plus
lectin-21Cb-PB 249 CG13686-PB 116..249 20..162 158 31 Plus