Clone BO13803 Report

Search the DGRC for BO13803

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:138
Well:3
Vector:pDNR-Dual
Associated Gene/TranscriptCG4688-RA
Protein status:BO13803.pep: validated full length
Sequenced Size:730

Clone Sequence Records

BO13803.3prime Sequence

728 bp (688 high quality bases) assembled on 2006-05-08

> BO13803.3prime
ATGGTCTAGAAAGCTTGCCTCCACCTTCTCGGTGACTACCGCTGATGACG
ATGGGAACTGAAAGCTACCGACGCTCTCCATCGTTTGGCGGAGCTTCTCC
AAGCCACTGCAGTTGGCCTCGTAGGCATCCAGCTGCTGCATCGCGGTGAA
CCAGCGCCGCAGACGTGGGAACTGCGACAGGGGAAACATGAGATTGACGG
TGCTCAATGTGGTCACGATGGATAAGTCGGCGAGCGTCAGCTGTGGCCCG
GCCATAAAATCGCTATTTTCCAGGTAACGCTCCATGATAATATACGCCTC
GGTCAGCTTGCGTTCATGATGTGCCACATCGACATTGGCGAATCCCTGGC
GGACAGTCGCCGACATAAAATCACTGTCACGTCGGAACAAAAAGGAGCAC
TCGAAGAGCAGGAGGTTCAGAACCTTCATCCGTTCTGCGTGCTCCTGCGG
CCACAAACTACCGCCCTCATCGAACTTCTCCGCCAGGTGAATGAGTATAG
CATGACTGTCCGTCAGCACCAGATCACCGTGGACTAGGGTGGGAACACTG
TGCTGGGGATTTAACGCTAAGAAATCTTTTTGGAATTGCTCGCCCTTGAA
GAGATTCACAAACCTGAGCTCCACATCTATATCGAGCAATTTGATTAGCA
TAAGGCAACTGCGGACCGGCGGACTGCGCTCGTCGTAATACAAAATCGGC
TTGGGCTGAGACATGTCGACTGATAACT

BO13803.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:11:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG4688-PA 699 CG4688-RA 1..696 714..19 3480 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:24:32
Subject Length Description Subject Range Query Range Score Percent Strand
GstE14-RA 1008 CG4688-RA 60..755 714..19 3480 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:24:24
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 13240536..13240760 243..19 1125 100 Minus
2R 25286936 2R 13240064..13240265 565..364 1010 100 Minus
2R 25286936 2R 13239788..13239941 714..561 755 99.4 Minus
2R 25286936 2R 13240323..13240446 364..241 620 100 Minus
Blast to na_te.dros performed on 2015-02-10 22:24:28 has no hits.

BO13803.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:12:42 Download gff for BO13803.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4688-PA 1..699 18..714 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:02:20 Download gff for BO13803.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4688-PA 1..699 18..714 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 08:00:01 Download gff for BO13803.3prime
Subject Subject Range Query Range Percent Splice Strand
GstE14-RA 60..759 13..714 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:08:18 Download gff for BO13803.3prime
Subject Subject Range Query Range Percent Splice Strand
GstE14-RA 60..759 13..714 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:08:18 Download gff for BO13803.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 13240539..13240764 13..240 98   Minus
2R 13239788..13239937 565..714 100 -> Minus
2R 13240065..13240265 364..564 100 -> Minus
2R 13240324..13240446 241..363 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 08:00:01 Download gff for BO13803.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 9127293..9127442 565..714 100 -> Minus
arm_2R 9127570..9127770 364..564 100 -> Minus
arm_2R 9127829..9127951 241..363 100 -> Minus
arm_2R 9128044..9128269 13..240 98   Minus

BO13803.5prime Sequence

728 bp (727 high quality bases) assembled on 2006-05-08

> BO13803.5prime
GAAGTTATCAGTCGACATGTCTCAGCCCAAGCCGATTTTGTATTACGACG
AGCGCAGTCCGCCGGTCCGCAGTTGCCTTATGCTAATCAAATTGCTCGAT
ATAGATGTGGAGCTCAGGTTTGTGAATCTCTTCAAGGGCGAGCAATTCCA
AAAAGATTTCTTAGCGTTAAATCCCCAGCACAGTGTTCCCACCCTAGTCC
ACGGTGATCTGGTGCTGACGGACAGTCATGCTATACTCATTCACCTGGCG
GAGAAGTTCGATGAGGGCGGTAGTTTGTGGCCGCAGGAGCACGCAGAACG
GATGAAGGTTCTGAACCTCCTGCTCTTCGAGTGCTCCTTTTTGTTCCGAC
GTGACAGTGATTTTATGTCGGCGACTGTCCGCCAGGGATTCGCCAATGTC
GATGTGGCACATCATGAACGCAAGCTGACCGAGGCGTATATTATCATGGA
GCGTTACCTGGAAAATAGCGATTTTATGGCCGGGCCACAGCTGACGCTCG
CCGACTTATCCATCGTGACCACATTGAGCACCGTCAATCTCATGTTTCCC
CTGTCGCAGTTCCCACGTCTGCGGCGCTGGTTCACCGCGATGCAGCAGCT
GGATGCCTACGAGGCCAACTGCAGTGGCTTGGAGAAGCTCCGCCAAACGA
TGGAGAGCGTCGGTAGCTTTCAGTTCCCATCGTCATCAGCGGTAGTCACC
GAGAAGGTGGAGGCAAGCTTTCTAGACC

BO13803.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:11:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG4688-PA 699 CG4688-RA 1..696 17..712 3480 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:13:21
Subject Length Description Subject Range Query Range Score Percent Strand
GstE14-RA 1008 CG4688-RA 60..755 17..712 3480 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 08:13:17
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 13240536..13240760 488..712 1125 100 Plus
2R 25286936 2R 13240064..13240265 166..367 1010 100 Plus
2R 25286936 2R 13239788..13239941 17..170 755 99.4 Plus
2R 25286936 2R 13240323..13240446 367..490 620 100 Plus
Blast to na_te.dros performed on 2015-02-13 08:13:20 has no hits.

BO13803.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:12:43 Download gff for BO13803.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4688-PA 1..699 17..713 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:02:21 Download gff for BO13803.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4688-PA 1..699 17..713 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 09:36:06 Download gff for BO13803.5prime
Subject Subject Range Query Range Percent Splice Strand
GstE14-RA 60..759 17..718 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:15:34 Download gff for BO13803.5prime
Subject Subject Range Query Range Percent Splice Strand
GstE14-RA 60..759 17..718 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:15:34 Download gff for BO13803.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 13240324..13240446 368..490 100 -> Plus
2R 13240539..13240764 491..718 98   Plus
2R 13239788..13239937 17..166 100 -> Plus
2R 13240065..13240265 167..367 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 09:36:06 Download gff for BO13803.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 9127293..9127442 17..166 100 -> Plus
arm_2R 9127570..9127770 167..367 100 -> Plus
arm_2R 9127829..9127951 368..490 100 -> Plus
arm_2R 9128044..9128269 491..718 98   Plus

BO13803.complete Sequence

730 bp assembled on 2006-10-11

GenBank Submission: FJ632928

> BO13803.complete
GAAGTTATCAGTCGACATGTCTCAGCCCAAGCCGATTTTGTATTACGACG
AGCGCAGTCCGCCGGTCCGCAGTTGCCTTATGCTAATCAAATTGCTCGAT
ATAGATGTGGAGCTCAGGTTTGTGAATCTCTTCAAGGGCGAGCAATTCCA
AAAAGATTTCTTAGCGTTAAATCCCCAGCACAGTGTTCCCACCCTAGTCC
ACGGTGATCTGGTGCTGACGGACAGTCATGCTATACTCATTCACCTGGCG
GAGAAGTTCGATGAGGGCGGTAGTTTGTGGCCGCAGGAGCACGCAGAACG
GATGAAGGTTCTGAACCTCCTGCTCTTCGAGTGCTCCTTTTTGTTCCGAC
GTGACAGTGATTTTATGTCGGCGACTGTCCGCCAGGGATTCGCCAATGTC
GATGTGGCACATCATGAACGCAAGCTGACCGAGGCGTATATTATCATGGA
GCGTTACCTGGAAAATAGCGATTTTATGGCCGGGCCACAGCTGACGCTCG
CCGACTTATCCATCGTGACCACATTGAGCACCGTCAATCTCATGTTTCCC
CTGTCGCAGTTCCCACGTCTGCGGCGCTGGTTCACCGCGATGCAGCAGCT
GGATGCCTACGAGGCCAACTGCAGTGGCTTGGAGAAGCTCCGCCAAACGA
TGGAGAGCGTCGGTAGCTTTCAGTTCCCATCGTCATCAGCGGTAGTCACC
GAGAAGGTGGAGGCAAGCTTTCTAGACCAT

BO13803.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:56:40
Subject Length Description Subject Range Query Range Score Percent Strand
GstE14-RA 699 CG4688-PA 1..696 17..712 3480 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:56:41
Subject Length Description Subject Range Query Range Score Percent Strand
GstE14-RA 1008 CG4688-RA 60..755 17..712 3480 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:56:39
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 13240536..13240760 488..712 1125 100 Plus
2R 25286936 2R 13240064..13240265 166..367 1010 100 Plus
2R 25286936 2R 13239788..13239941 17..170 755 99.4 Plus
2R 25286936 2R 13240323..13240446 367..490 620 100 Plus
Blast to na_te.dros performed on 2014-11-27 20:56:39 has no hits.

BO13803.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:44:56 Download gff for BO13803.complete
Subject Subject Range Query Range Percent Splice Strand
CG4688-RA 1..699 17..713 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:58:54 Download gff for BO13803.complete
Subject Subject Range Query Range Percent Splice Strand
CG4688-RA 61..760 17..718 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:13:15 Download gff for BO13803.complete
Subject Subject Range Query Range Percent Splice Strand
GstE14-RA 60..755 17..714 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:44:56 Download gff for BO13803.complete
Subject Subject Range Query Range Percent Splice Strand
CG4688-RA 61..760 17..718 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:31:33 Download gff for BO13803.complete
Subject Subject Range Query Range Percent Splice Strand
GstE14-RA 60..755 17..714 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:31:33 Download gff for BO13803.complete
Subject Subject Range Query Range Percent Splice Strand
2R 13239788..13239937 17..166 100 -> Plus
2R 13240065..13240265 167..367 100 -> Plus
2R 13240324..13240446 368..490 100 -> Plus
2R 13240539..13240760 491..714 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:13:15 Download gff for BO13803.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 9127293..9127442 17..166 100 -> Plus
arm_2R 9127570..9127770 167..367 100 -> Plus
arm_2R 9127829..9127951 368..490 100 -> Plus
arm_2R 9128044..9128265 491..714 99   Plus

BO13803.pep Sequence

Translation from 16 to 730

> BO13803.pep
MSQPKPILYYDERSPPVRSCLMLIKLLDIDVELRFVNLFKGEQFQKDFLA
LNPQHSVPTLVHGDLVLTDSHAILIHLAEKFDEGGSLWPQEHAERMKVLN
LLLFECSFLFRRDSDFMSATVRQGFANVDVAHHERKLTEAYIIMERYLEN
SDFMAGPQLTLADLSIVTTLSTVNLMFPLSQFPRLRRWFTAMQQLDAYEA
NCSGLEKLRQTMESVGSFQFPSSSAVVTEKVEASFLDH

BO13803.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:57:25
Subject Length Description Subject Range Query Range Score Percent Strand
GstE14-PA 232 CG4688-PA 1..232 1..232 1192 100 Plus
GstE4-PA 222 CG17525-PA 6..215 8..214 331 34.8 Plus
GstE12-PC 223 CG16936-PC 3..215 5..214 314 34.3 Plus
GstE12-PB 223 CG16936-PB 3..215 5..214 314 34.3 Plus
GstE12-PD 223 CG16936-PD 3..215 5..214 314 34.3 Plus