Clone Sequence Records
BO13803.3prime Sequence
728 bp (688 high quality bases) assembled on 2006-05-08
> BO13803.3prime
ATGGTCTAGAAAGCTTGCCTCCACCTTCTCGGTGACTACCGCTGATGACG
ATGGGAACTGAAAGCTACCGACGCTCTCCATCGTTTGGCGGAGCTTCTCC
AAGCCACTGCAGTTGGCCTCGTAGGCATCCAGCTGCTGCATCGCGGTGAA
CCAGCGCCGCAGACGTGGGAACTGCGACAGGGGAAACATGAGATTGACGG
TGCTCAATGTGGTCACGATGGATAAGTCGGCGAGCGTCAGCTGTGGCCCG
GCCATAAAATCGCTATTTTCCAGGTAACGCTCCATGATAATATACGCCTC
GGTCAGCTTGCGTTCATGATGTGCCACATCGACATTGGCGAATCCCTGGC
GGACAGTCGCCGACATAAAATCACTGTCACGTCGGAACAAAAAGGAGCAC
TCGAAGAGCAGGAGGTTCAGAACCTTCATCCGTTCTGCGTGCTCCTGCGG
CCACAAACTACCGCCCTCATCGAACTTCTCCGCCAGGTGAATGAGTATAG
CATGACTGTCCGTCAGCACCAGATCACCGTGGACTAGGGTGGGAACACTG
TGCTGGGGATTTAACGCTAAGAAATCTTTTTGGAATTGCTCGCCCTTGAA
GAGATTCACAAACCTGAGCTCCACATCTATATCGAGCAATTTGATTAGCA
TAAGGCAACTGCGGACCGGCGGACTGCGCTCGTCGTAATACAAAATCGGC
TTGGGCTGAGACATGTCGACTGATAACT
BO13803.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:11:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4688-PA | 699 | CG4688-RA | 1..696 | 714..19 | 3480 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:24:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
GstE14-RA | 1008 | CG4688-RA | 60..755 | 714..19 | 3480 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:24:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 13240536..13240760 | 243..19 | 1125 | 100 | Minus |
2R | 25286936 | 2R | 13240064..13240265 | 565..364 | 1010 | 100 | Minus |
2R | 25286936 | 2R | 13239788..13239941 | 714..561 | 755 | 99.4 | Minus |
2R | 25286936 | 2R | 13240323..13240446 | 364..241 | 620 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 22:24:28 has no hits.
BO13803.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:12:42 Download gff for
BO13803.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4688-PA | 1..699 | 18..714 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:02:20 Download gff for
BO13803.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4688-PA | 1..699 | 18..714 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 08:00:01 Download gff for
BO13803.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
GstE14-RA | 60..759 | 13..714 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:08:18 Download gff for
BO13803.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
GstE14-RA | 60..759 | 13..714 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:08:18 Download gff for
BO13803.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 13240539..13240764 | 13..240 | 98 | | Minus |
2R | 13239788..13239937 | 565..714 | 100 | -> | Minus |
2R | 13240065..13240265 | 364..564 | 100 | -> | Minus |
2R | 13240324..13240446 | 241..363 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 08:00:01 Download gff for
BO13803.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 9127293..9127442 | 565..714 | 100 | -> | Minus |
arm_2R | 9127570..9127770 | 364..564 | 100 | -> | Minus |
arm_2R | 9127829..9127951 | 241..363 | 100 | -> | Minus |
arm_2R | 9128044..9128269 | 13..240 | 98 | | Minus |
BO13803.5prime Sequence
728 bp (727 high quality bases) assembled on 2006-05-08
> BO13803.5prime
GAAGTTATCAGTCGACATGTCTCAGCCCAAGCCGATTTTGTATTACGACG
AGCGCAGTCCGCCGGTCCGCAGTTGCCTTATGCTAATCAAATTGCTCGAT
ATAGATGTGGAGCTCAGGTTTGTGAATCTCTTCAAGGGCGAGCAATTCCA
AAAAGATTTCTTAGCGTTAAATCCCCAGCACAGTGTTCCCACCCTAGTCC
ACGGTGATCTGGTGCTGACGGACAGTCATGCTATACTCATTCACCTGGCG
GAGAAGTTCGATGAGGGCGGTAGTTTGTGGCCGCAGGAGCACGCAGAACG
GATGAAGGTTCTGAACCTCCTGCTCTTCGAGTGCTCCTTTTTGTTCCGAC
GTGACAGTGATTTTATGTCGGCGACTGTCCGCCAGGGATTCGCCAATGTC
GATGTGGCACATCATGAACGCAAGCTGACCGAGGCGTATATTATCATGGA
GCGTTACCTGGAAAATAGCGATTTTATGGCCGGGCCACAGCTGACGCTCG
CCGACTTATCCATCGTGACCACATTGAGCACCGTCAATCTCATGTTTCCC
CTGTCGCAGTTCCCACGTCTGCGGCGCTGGTTCACCGCGATGCAGCAGCT
GGATGCCTACGAGGCCAACTGCAGTGGCTTGGAGAAGCTCCGCCAAACGA
TGGAGAGCGTCGGTAGCTTTCAGTTCCCATCGTCATCAGCGGTAGTCACC
GAGAAGGTGGAGGCAAGCTTTCTAGACC
BO13803.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:11:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4688-PA | 699 | CG4688-RA | 1..696 | 17..712 | 3480 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:13:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
GstE14-RA | 1008 | CG4688-RA | 60..755 | 17..712 | 3480 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 08:13:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 13240536..13240760 | 488..712 | 1125 | 100 | Plus |
2R | 25286936 | 2R | 13240064..13240265 | 166..367 | 1010 | 100 | Plus |
2R | 25286936 | 2R | 13239788..13239941 | 17..170 | 755 | 99.4 | Plus |
2R | 25286936 | 2R | 13240323..13240446 | 367..490 | 620 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 08:13:20 has no hits.
BO13803.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:12:43 Download gff for
BO13803.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4688-PA | 1..699 | 17..713 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:02:21 Download gff for
BO13803.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4688-PA | 1..699 | 17..713 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 09:36:06 Download gff for
BO13803.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
GstE14-RA | 60..759 | 17..718 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:15:34 Download gff for
BO13803.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
GstE14-RA | 60..759 | 17..718 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:15:34 Download gff for
BO13803.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 13240324..13240446 | 368..490 | 100 | -> | Plus |
2R | 13240539..13240764 | 491..718 | 98 | | Plus |
2R | 13239788..13239937 | 17..166 | 100 | -> | Plus |
2R | 13240065..13240265 | 167..367 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 09:36:06 Download gff for
BO13803.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 9127293..9127442 | 17..166 | 100 | -> | Plus |
arm_2R | 9127570..9127770 | 167..367 | 100 | -> | Plus |
arm_2R | 9127829..9127951 | 368..490 | 100 | -> | Plus |
arm_2R | 9128044..9128269 | 491..718 | 98 | | Plus |
BO13803.complete Sequence
730 bp assembled on 2006-10-11
GenBank Submission: FJ632928
> BO13803.complete
GAAGTTATCAGTCGACATGTCTCAGCCCAAGCCGATTTTGTATTACGACG
AGCGCAGTCCGCCGGTCCGCAGTTGCCTTATGCTAATCAAATTGCTCGAT
ATAGATGTGGAGCTCAGGTTTGTGAATCTCTTCAAGGGCGAGCAATTCCA
AAAAGATTTCTTAGCGTTAAATCCCCAGCACAGTGTTCCCACCCTAGTCC
ACGGTGATCTGGTGCTGACGGACAGTCATGCTATACTCATTCACCTGGCG
GAGAAGTTCGATGAGGGCGGTAGTTTGTGGCCGCAGGAGCACGCAGAACG
GATGAAGGTTCTGAACCTCCTGCTCTTCGAGTGCTCCTTTTTGTTCCGAC
GTGACAGTGATTTTATGTCGGCGACTGTCCGCCAGGGATTCGCCAATGTC
GATGTGGCACATCATGAACGCAAGCTGACCGAGGCGTATATTATCATGGA
GCGTTACCTGGAAAATAGCGATTTTATGGCCGGGCCACAGCTGACGCTCG
CCGACTTATCCATCGTGACCACATTGAGCACCGTCAATCTCATGTTTCCC
CTGTCGCAGTTCCCACGTCTGCGGCGCTGGTTCACCGCGATGCAGCAGCT
GGATGCCTACGAGGCCAACTGCAGTGGCTTGGAGAAGCTCCGCCAAACGA
TGGAGAGCGTCGGTAGCTTTCAGTTCCCATCGTCATCAGCGGTAGTCACC
GAGAAGGTGGAGGCAAGCTTTCTAGACCAT
BO13803.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:56:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
GstE14-RA | 699 | CG4688-PA | 1..696 | 17..712 | 3480 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:56:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
GstE14-RA | 1008 | CG4688-RA | 60..755 | 17..712 | 3480 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:56:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 13240536..13240760 | 488..712 | 1125 | 100 | Plus |
2R | 25286936 | 2R | 13240064..13240265 | 166..367 | 1010 | 100 | Plus |
2R | 25286936 | 2R | 13239788..13239941 | 17..170 | 755 | 99.4 | Plus |
2R | 25286936 | 2R | 13240323..13240446 | 367..490 | 620 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:56:39 has no hits.
BO13803.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:44:56 Download gff for
BO13803.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4688-RA | 1..699 | 17..713 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:58:54 Download gff for
BO13803.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4688-RA | 61..760 | 17..718 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:13:15 Download gff for
BO13803.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
GstE14-RA | 60..755 | 17..714 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:44:56 Download gff for
BO13803.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4688-RA | 61..760 | 17..718 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:31:33 Download gff for
BO13803.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
GstE14-RA | 60..755 | 17..714 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:31:33 Download gff for
BO13803.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 13239788..13239937 | 17..166 | 100 | -> | Plus |
2R | 13240065..13240265 | 167..367 | 100 | -> | Plus |
2R | 13240324..13240446 | 368..490 | 100 | -> | Plus |
2R | 13240539..13240760 | 491..714 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:13:15 Download gff for
BO13803.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 9127293..9127442 | 17..166 | 100 | -> | Plus |
arm_2R | 9127570..9127770 | 167..367 | 100 | -> | Plus |
arm_2R | 9127829..9127951 | 368..490 | 100 | -> | Plus |
arm_2R | 9128044..9128265 | 491..714 | 99 | | Plus |
BO13803.pep Sequence
Translation from 16 to 730
> BO13803.pep
MSQPKPILYYDERSPPVRSCLMLIKLLDIDVELRFVNLFKGEQFQKDFLA
LNPQHSVPTLVHGDLVLTDSHAILIHLAEKFDEGGSLWPQEHAERMKVLN
LLLFECSFLFRRDSDFMSATVRQGFANVDVAHHERKLTEAYIIMERYLEN
SDFMAGPQLTLADLSIVTTLSTVNLMFPLSQFPRLRRWFTAMQQLDAYEA
NCSGLEKLRQTMESVGSFQFPSSSAVVTEKVEASFLDH
BO13803.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:57:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
GstE14-PA | 232 | CG4688-PA | 1..232 | 1..232 | 1192 | 100 | Plus |
GstE4-PA | 222 | CG17525-PA | 6..215 | 8..214 | 331 | 34.8 | Plus |
GstE12-PC | 223 | CG16936-PC | 3..215 | 5..214 | 314 | 34.3 | Plus |
GstE12-PB | 223 | CG16936-PB | 3..215 | 5..214 | 314 | 34.3 | Plus |
GstE12-PD | 223 | CG16936-PD | 3..215 | 5..214 | 314 | 34.3 | Plus |