Clone BO13808 Report

Search the DGRC for BO13808

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:138
Well:8
Vector:pDNR-Dual
Associated Gene/TranscriptsnRNP-U1-C-RA
Protein status:BO13808.pep: validated full length
Sequenced Size:469

Clone Sequence Records

BO13808.3prime Sequence

467 bp (466 high quality bases) assembled on 2006-05-08

> BO13808.3prime
ATGGTCTAGAAAGCTTGCCTTGGGTCCGTTCATGATTCCTGGACGGACGC
CGGGTATAGTGCCCAGTGGAGGCGGTGGTCCCATCATGGCCATGGGATTC
ATAATCGGTGGCGGACGCATGCCCATCATGGGGTTCATCAGTGGAGGCAT
ATAGGGCATTCCAGGCATTCCCGGACGCGGAGGAGCCCCCATGTTGGGCG
GCGGAATAGACACGCCCGCCGGCTTGGGAGGCGCTCCTCCTGGCCCGCCG
GCAAACGGATTGTTCGTGATCTTGCCCGCTTTGAAGGCGGCGGTAGTGGC
GTCAATCAAATGCTGCGCCTGTTCCTCCATCCACTTTTGGTAGTAGAACT
TTACATTGTCGCGATGCTTGCGGCCGGTGCAGTGGGTTTTCCGCACCGAG
GGCGAGTCGTGGGTCAAGTAGGTGTCGCAGTAGTCGCAATAGTACTTTGG
CATGTCGACTGATAACT

BO13808.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:11:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG5454-PA 438 CG5454-RA 1..435 453..19 2150 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 04:16:34
Subject Length Description Subject Range Query Range Score Percent Strand
snRNP-U1-C-RA 687 CG5454-RA 111..545 453..19 2160 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 04:16:27
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 18983106..18983540 19..453 2160 99.8 Plus
Blast to na_te.dros performed on 2015-02-01 04:16:30 has no hits.

BO13808.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:12:46 Download gff for BO13808.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5454-PA 1..438 16..453 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:02:26 Download gff for BO13808.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5454-PA 1..438 16..453 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 15:03:35 Download gff for BO13808.3prime
Subject Subject Range Query Range Percent Splice Strand
snRNP-U1-C-RA 100..547 15..463 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 05:45:30 Download gff for BO13808.3prime
Subject Subject Range Query Range Percent Splice Strand
snRNP-U1-C-RA 102..549 15..463 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 05:45:30 Download gff for BO13808.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 18983102..18983549 15..463 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 15:03:35 Download gff for BO13808.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 14808824..14809271 15..463 98   Plus

BO13808.5prime Sequence

467 bp (466 high quality bases) assembled on 2006-05-08

> BO13808.5prime
GAAGTTATCAGTCGACATGCCAAAGTACTATTGCGACTACTGCGACACCT
ACTTGACCCACGACTCGCCCTCGGTGCGGAAAACCCACTGCACCGGCCGC
AAGCATCGCGACAATGTAAAGTTCTACTACCAAAAGTGGATGGAGGAACA
GGCGCAGCATTTGATTGACGCCACTACCGCCGCCTTCAAAGCGGGCAAGA
TCACGAACAATCCGTTTGCCGGCGGGCCAGGAGGAGCGCCTCCCAAGCCG
GCGGGCGTGTCTATTCCGCCGCCCAACATGGGGGCTCCTCCGCGTCCGGG
AATGCCTGGAATGCCCTATATGCCTCCACTGATGAACCCCATGATGGGCA
TGCGTCCGCCACCGATTATGAATCCCATGGCCATGATGGGACCACCGCCT
CCACTGGGCACTATACCCGGCGTCCGTCCAGGAATCATGAACGGACCCAA
GGCAAGCTTTCTAGACC

BO13808.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:11:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG5454-PA 438 CG5454-RA 1..435 17..451 2150 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:41:01
Subject Length Description Subject Range Query Range Score Percent Strand
snRNP-U1-C-RA 687 CG5454-RA 111..545 17..451 2160 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:40:55
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 18983106..18983540 451..17 2160 99.8 Minus
Blast to na_te.dros performed on 2015-02-11 16:40:58 has no hits.

BO13808.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:12:47 Download gff for BO13808.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5454-PA 1..438 17..454 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:02:27 Download gff for BO13808.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5454-PA 1..438 17..454 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:04:56 Download gff for BO13808.5prime
Subject Subject Range Query Range Percent Splice Strand
snRNP-U1-C-RA 100..547 7..455 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:52:28 Download gff for BO13808.5prime
Subject Subject Range Query Range Percent Splice Strand
snRNP-U1-C-RA 102..549 7..455 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:52:28 Download gff for BO13808.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 18983102..18983549 7..455 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:04:56 Download gff for BO13808.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 14808824..14809271 7..455 98   Minus

BO13808.complete Sequence

469 bp assembled on 2006-10-11

GenBank Submission: FJ632930

> BO13808.complete
GAAGTTATCAGTCGACATGCCAAAGTACTATTGCGACTACTGCGACACCT
ACTTGACCCACGACTCGCCCTCGGTGCGGAAAACCCACTGCACCGGCCGC
AAGCATCGCGACAATGTAAAGTTCTACTACCAAAAGTGGATGGAGGAACA
GGCGCAGCATTTGATTGACGCCACTACCGCCGCCTTCAAAGCGGGCAAGA
TCACGAACAATCCGTTTGCCGGCGGGCCAGGAGGAGCGCCTCCCAAGCCG
GCGGGCGTGTCTATTCCGCCGCCCAACATGGGGGCTCCTCCGCGTCCGGG
AATGCCTGGAATGCCCTATATGCCTCCACTGATGAACCCCATGATGGGCA
TGCGTCCGCCACCGATTATGAATCCCATGGCCATGATGGGACCACCGCCT
CCACTGGGCACTATACCCGGCGTCCGTCCAGGAATCATGAACGGACCCAA
GGCAAGCTTTCTAGACCAT

BO13808.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 00:57:07
Subject Length Description Subject Range Query Range Score Percent Strand
snRNP-U1-C-RA 438 CG5454-PA 1..435 17..451 2160 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:57:08
Subject Length Description Subject Range Query Range Score Percent Strand
snRNP-U1-C-RA 687 CG5454-RA 111..545 17..451 2160 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:57:06
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 18983106..18983540 451..17 2160 99.8 Minus
Blast to na_te.dros performed on 2014-11-27 00:57:06 has no hits.

BO13808.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:44:29 Download gff for BO13808.complete
Subject Subject Range Query Range Percent Splice Strand
snRNP-U1-RA 1..438 17..454 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:58:26 Download gff for BO13808.complete
Subject Subject Range Query Range Percent Splice Strand
snRNP-U1-RA 100..547 7..455 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:39:42 Download gff for BO13808.complete
Subject Subject Range Query Range Percent Splice Strand
snRNP-U1-C-RA 109..543 17..453 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:44:29 Download gff for BO13808.complete
Subject Subject Range Query Range Percent Splice Strand
snRNP-U1-RA 100..547 7..455 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:14:30 Download gff for BO13808.complete
Subject Subject Range Query Range Percent Splice Strand
snRNP-U1-C-RA 111..545 17..453 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:14:30 Download gff for BO13808.complete
Subject Subject Range Query Range Percent Splice Strand
3R 18983103..18983540 17..453 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:39:42 Download gff for BO13808.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 14808825..14809262 17..453 99   Minus

BO13808.pep Sequence

Translation from 16 to 469

> BO13808.pep
MPKYYCDYCDTYLTHDSPSVRKTHCTGRKHRDNVKFYYQKWMEEQAQHLI
DATTAAFKAGKITNNPFAGGPGGAPPKPAGVSIPPPNMGAPPRPGMPGMP
YMPPLMNPMMGMRPPPIMNPMAMMGPPPPLGTIPGVRPGIMNGPKASFLD
H

BO13808.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:34:47
Subject Length Description Subject Range Query Range Score Percent Strand
snRNP-U1-C-PA 145 CG5454-PA 1..145 1..145 831 100 Plus