Clone Sequence Records
BO13808.3prime Sequence
467 bp (466 high quality bases) assembled on 2006-05-08
> BO13808.3prime
ATGGTCTAGAAAGCTTGCCTTGGGTCCGTTCATGATTCCTGGACGGACGC
CGGGTATAGTGCCCAGTGGAGGCGGTGGTCCCATCATGGCCATGGGATTC
ATAATCGGTGGCGGACGCATGCCCATCATGGGGTTCATCAGTGGAGGCAT
ATAGGGCATTCCAGGCATTCCCGGACGCGGAGGAGCCCCCATGTTGGGCG
GCGGAATAGACACGCCCGCCGGCTTGGGAGGCGCTCCTCCTGGCCCGCCG
GCAAACGGATTGTTCGTGATCTTGCCCGCTTTGAAGGCGGCGGTAGTGGC
GTCAATCAAATGCTGCGCCTGTTCCTCCATCCACTTTTGGTAGTAGAACT
TTACATTGTCGCGATGCTTGCGGCCGGTGCAGTGGGTTTTCCGCACCGAG
GGCGAGTCGTGGGTCAAGTAGGTGTCGCAGTAGTCGCAATAGTACTTTGG
CATGTCGACTGATAACT
BO13808.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:11:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5454-PA | 438 | CG5454-RA | 1..435 | 453..19 | 2150 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 04:16:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
snRNP-U1-C-RA | 687 | CG5454-RA | 111..545 | 453..19 | 2160 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 04:16:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 18983106..18983540 | 19..453 | 2160 | 99.8 | Plus |
Blast to na_te.dros performed on 2015-02-01 04:16:30 has no hits.
BO13808.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:12:46 Download gff for
BO13808.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5454-PA | 1..438 | 16..453 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:02:26 Download gff for
BO13808.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5454-PA | 1..438 | 16..453 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 15:03:35 Download gff for
BO13808.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
snRNP-U1-C-RA | 100..547 | 15..463 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 05:45:30 Download gff for
BO13808.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
snRNP-U1-C-RA | 102..549 | 15..463 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 05:45:30 Download gff for
BO13808.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 18983102..18983549 | 15..463 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 15:03:35 Download gff for
BO13808.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 14808824..14809271 | 15..463 | 98 | | Plus |
BO13808.5prime Sequence
467 bp (466 high quality bases) assembled on 2006-05-08
> BO13808.5prime
GAAGTTATCAGTCGACATGCCAAAGTACTATTGCGACTACTGCGACACCT
ACTTGACCCACGACTCGCCCTCGGTGCGGAAAACCCACTGCACCGGCCGC
AAGCATCGCGACAATGTAAAGTTCTACTACCAAAAGTGGATGGAGGAACA
GGCGCAGCATTTGATTGACGCCACTACCGCCGCCTTCAAAGCGGGCAAGA
TCACGAACAATCCGTTTGCCGGCGGGCCAGGAGGAGCGCCTCCCAAGCCG
GCGGGCGTGTCTATTCCGCCGCCCAACATGGGGGCTCCTCCGCGTCCGGG
AATGCCTGGAATGCCCTATATGCCTCCACTGATGAACCCCATGATGGGCA
TGCGTCCGCCACCGATTATGAATCCCATGGCCATGATGGGACCACCGCCT
CCACTGGGCACTATACCCGGCGTCCGTCCAGGAATCATGAACGGACCCAA
GGCAAGCTTTCTAGACC
BO13808.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:11:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5454-PA | 438 | CG5454-RA | 1..435 | 17..451 | 2150 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:41:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
snRNP-U1-C-RA | 687 | CG5454-RA | 111..545 | 17..451 | 2160 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:40:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 18983106..18983540 | 451..17 | 2160 | 99.8 | Minus |
Blast to na_te.dros performed on 2015-02-11 16:40:58 has no hits.
BO13808.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:12:47 Download gff for
BO13808.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5454-PA | 1..438 | 17..454 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:02:27 Download gff for
BO13808.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5454-PA | 1..438 | 17..454 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:04:56 Download gff for
BO13808.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
snRNP-U1-C-RA | 100..547 | 7..455 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:52:28 Download gff for
BO13808.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
snRNP-U1-C-RA | 102..549 | 7..455 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:52:28 Download gff for
BO13808.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 18983102..18983549 | 7..455 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:04:56 Download gff for
BO13808.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 14808824..14809271 | 7..455 | 98 | | Minus |
BO13808.complete Sequence
469 bp assembled on 2006-10-11
GenBank Submission: FJ632930
> BO13808.complete
GAAGTTATCAGTCGACATGCCAAAGTACTATTGCGACTACTGCGACACCT
ACTTGACCCACGACTCGCCCTCGGTGCGGAAAACCCACTGCACCGGCCGC
AAGCATCGCGACAATGTAAAGTTCTACTACCAAAAGTGGATGGAGGAACA
GGCGCAGCATTTGATTGACGCCACTACCGCCGCCTTCAAAGCGGGCAAGA
TCACGAACAATCCGTTTGCCGGCGGGCCAGGAGGAGCGCCTCCCAAGCCG
GCGGGCGTGTCTATTCCGCCGCCCAACATGGGGGCTCCTCCGCGTCCGGG
AATGCCTGGAATGCCCTATATGCCTCCACTGATGAACCCCATGATGGGCA
TGCGTCCGCCACCGATTATGAATCCCATGGCCATGATGGGACCACCGCCT
CCACTGGGCACTATACCCGGCGTCCGTCCAGGAATCATGAACGGACCCAA
GGCAAGCTTTCTAGACCAT
BO13808.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 00:57:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
snRNP-U1-C-RA | 438 | CG5454-PA | 1..435 | 17..451 | 2160 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:57:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
snRNP-U1-C-RA | 687 | CG5454-RA | 111..545 | 17..451 | 2160 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:57:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 18983106..18983540 | 451..17 | 2160 | 99.8 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:57:06 has no hits.
BO13808.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:44:29 Download gff for
BO13808.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
snRNP-U1-RA | 1..438 | 17..454 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:58:26 Download gff for
BO13808.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
snRNP-U1-RA | 100..547 | 7..455 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:39:42 Download gff for
BO13808.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
snRNP-U1-C-RA | 109..543 | 17..453 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:44:29 Download gff for
BO13808.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
snRNP-U1-RA | 100..547 | 7..455 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:14:30 Download gff for
BO13808.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
snRNP-U1-C-RA | 111..545 | 17..453 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:14:30 Download gff for
BO13808.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 18983103..18983540 | 17..453 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:39:42 Download gff for
BO13808.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 14808825..14809262 | 17..453 | 99 | | Minus |
BO13808.pep Sequence
Translation from 16 to 469
> BO13808.pep
MPKYYCDYCDTYLTHDSPSVRKTHCTGRKHRDNVKFYYQKWMEEQAQHLI
DATTAAFKAGKITNNPFAGGPGGAPPKPAGVSIPPPNMGAPPRPGMPGMP
YMPPLMNPMMGMRPPPIMNPMAMMGPPPPLGTIPGVRPGIMNGPKASFLD
H
BO13808.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:34:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
snRNP-U1-C-PA | 145 | CG5454-PA | 1..145 | 1..145 | 831 | 100 | Plus |