Clone Sequence Records
BO13810.3prime Sequence
494 bp (493 high quality bases) assembled on 2006-05-08
> BO13810.3prime
ATGGTCTAGAAAGCTTGCCGGCATGCCGCCCAGTCGCTTGTAGTCGATCT
TCTCGAGCTGCACGAGTGGCTTTAGTTGCTCGGCAAACACGCGCATTTCC
TCGCCGACATTCTCCTGCCCCGTTGGCGCCACCACAGAGAGTTCCACTAT
GTAGCTTTGTGAGATTGGCTCGTTGGCCATGTCCTGCTGCTTGCCGGGCA
CAATCTTAATGAGCTTGGAGACGGTAATCTTCATGCGCCCCTTGCGGAAC
ATATAGCCCTTTGCTATGTACTCGAACTCCAGGCGGAAGCCCATTTCCGT
GAGGAATTCCAAAATGCCATTGGTGCAGGCGCAGTCCATGCAGCTGCGTA
CCAATGTAGGCCGGCGCAGATCCACCTCGGGGTTTCCTAGGTAGCGCATC
TGAAAGGGTGCATCGCGACCAAGGGCTCGGCGCACGCGAAGAAGCAGCGG
CTGGTTGGCATTGGGCTGGCGAAGGCTCATGTCGACTGATAACT
BO13810.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:11:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14802-PA | 654 | MED18-RA | 190..651 | 480..19 | 2310 | 100 | Minus |
CG14802-PB | 465 | MED18-RB | 1..462 | 480..19 | 2310 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:15:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
MED18-RC | 865 | CG14802-RC | 318..779 | 480..19 | 2310 | 100 | Minus |
MED18-RA | 842 | CG14802-RA | 295..756 | 480..19 | 2310 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:15:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 1866562..1866801 | 258..19 | 1200 | 100 | Minus |
X | 23542271 | X | 1866273..1866496 | 480..257 | 1120 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 19:15:23 has no hits.
BO13810.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:12:48 Download gff for
BO13810.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MED18-PA | 186..654 | 18..486 | 98 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:02:28 Download gff for
BO13810.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14802-PB | 1..465 | 18..480 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 03:53:31 Download gff for
BO13810.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MED18-RA | 291..762 | 10..486 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:48:23 Download gff for
BO13810.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MED18-RA | 291..762 | 10..486 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:48:23 Download gff for
BO13810.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 1866269..1866495 | 258..486 | 98 | -> | Minus |
X | 1866563..1866807 | 10..257 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 03:53:31 Download gff for
BO13810.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 1760302..1760528 | 258..486 | 98 | -> | Minus |
arm_X | 1760596..1760840 | 10..257 | 98 | | Minus |
BO13810.5prime Sequence
494 bp (493 high quality bases) assembled on 2006-05-08
> BO13810.5prime
GAAGTTATCAGTCGACATGAGCCTTCGCCAGCCCAATGCCAACCAGCCGC
TGCTTCTTCGCGTGCGCCGAGCCCTTGGTCGCGATGCACCCTTTCAGATG
CGCTACCTAGGAAACCCCGAGGTGGATCTGCGCCGGCCTACATTGGTACG
CAGCTGCATGGACTGCGCCTGCACCAATGGCATTTTGGAATTCCTCACGG
AAATGGGCTTCCGCCTGGAGTTCGAGTACATAGCAAAGGGCTATATGTTC
CGCAAGGGGCGCATGAAGATTACCGTCTCCAAGCTCATTAAGATTGTGCC
CGGCAAGCAGCAGGACATGGCCAACGAGCCAATCTCACAAAGCTACATAG
TGGAACTCTCTGTGGTGGCGCCAACGGGGCAGGAGAATGTCGGCGAGGAA
ATGCGCGTGTTTGCCGAGCAACTAAAGCCACTCGTGCAGCTCGAGAAGAT
CGACTACAAGCGACTGGGCGGCATGCCGGCAAGCTTTCTAGACC
BO13810.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:11:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14802-PA | 654 | MED18-RA | 190..651 | 17..478 | 2310 | 100 | Plus |
CG14802-PB | 465 | MED18-RB | 1..462 | 17..478 | 2310 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 02:50:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
MED18-RC | 865 | CG14802-RC | 318..779 | 17..478 | 2310 | 100 | Plus |
MED18-RA | 842 | CG14802-RA | 295..756 | 17..478 | 2310 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 02:50:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 1866562..1866801 | 239..478 | 1200 | 100 | Plus |
X | 23542271 | X | 1866273..1866496 | 17..240 | 1120 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-04 02:50:49 has no hits.
BO13810.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:12:49 Download gff for
BO13810.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MED18-PA | 186..654 | 11..479 | 98 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:02:30 Download gff for
BO13810.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14802-PB | 1..465 | 17..479 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 20:48:28 Download gff for
BO13810.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MED18-RA | 291..762 | 11..487 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:24:54 Download gff for
BO13810.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MED18-RA | 291..762 | 11..487 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:24:54 Download gff for
BO13810.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 1866269..1866495 | 11..239 | 98 | -> | Plus |
X | 1866563..1866807 | 240..487 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 20:48:28 Download gff for
BO13810.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 1760302..1760528 | 11..239 | 98 | -> | Plus |
arm_X | 1760596..1760840 | 240..487 | 98 | | Plus |
BO13810.complete Sequence
496 bp assembled on 2006-10-11
GenBank Submission: FJ632931
> BO13810.complete
GAAGTTATCAGTCGACATGAGCCTTCGCCAGCCCAATGCCAACCAGCCGC
TGCTTCTTCGCGTGCGCCGAGCCCTTGGTCGCGATGCACCCTTTCAGATG
CGCTACCTAGGAAACCCCGAGGTGGATCTGCGCCGGCCTACATTGGTACG
CAGCTGCATGGACTGCGCCTGCACCAATGGCATTTTGGAATTCCTCACGG
AAATGGGCTTCCGCCTGGAGTTCGAGTACATAGCAAAGGGCTATATGTTC
CGCAAGGGGCGCATGAAGATTACCGTCTCCAAGCTCATTAAGATTGTGCC
CGGCAAGCAGCAGGACATGGCCAACGAGCCAATCTCACAAAGCTACATAG
TGGAACTCTCTGTGGTGGCGCCAACGGGGCAGGAGAATGTCGGCGAGGAA
ATGCGCGTGTTTGCCGAGCAACTAAAGCCACTCGTGCAGCTCGAGAAGAT
CGACTACAAGCGACTGGGCGGCATGCCGGCAAGCTTTCTAGACCAT
BO13810.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:18:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
MED18-RA | 654 | CG14802-PA | 190..651 | 17..478 | 2310 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:18:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
MED18-RC | 865 | CG14802-RC | 318..779 | 17..478 | 2310 | 100 | Plus |
MED18-RA | 842 | CG14802-RA | 295..756 | 17..478 | 2310 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:18:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 1866562..1866801 | 239..478 | 1200 | 100 | Plus |
X | 23542271 | X | 1866273..1866496 | 17..240 | 1120 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 01:18:09 has no hits.
BO13810.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:44:30 Download gff for
BO13810.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MED18-RA | 186..654 | 11..479 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:03:05 Download gff for
BO13810.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MED18-RC | 314..785 | 11..487 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:45:36 Download gff for
BO13810.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MED18-RA | 295..756 | 17..480 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:44:31 Download gff for
BO13810.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MED18-RC | 314..785 | 11..487 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:50:21 Download gff for
BO13810.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MED18-RA | 295..756 | 17..480 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:50:21 Download gff for
BO13810.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 1866273..1866495 | 17..239 | 100 | -> | Plus |
X | 1866563..1866801 | 240..480 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:45:36 Download gff for
BO13810.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 1760306..1760528 | 17..239 | 100 | -> | Plus |
arm_X | 1760596..1760834 | 240..480 | 99 | | Plus |
BO13810.pep Sequence
Translation from 16 to 496
> BO13810.pep
MSLRQPNANQPLLLRVRRALGRDAPFQMRYLGNPEVDLRRPTLVRSCMDC
ACTNGILEFLTEMGFRLEFEYIAKGYMFRKGRMKITVSKLIKIVPGKQQD
MANEPISQSYIVELSVVAPTGQENVGEEMRVFAEQLKPLVQLEKIDYKRL
GGMPASFLDH
BO13810.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:18:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
MED18-PA | 217 | CG14802-PA | 64..217 | 1..154 | 790 | 100 | Plus |