Clone BO13810 Report

Search the DGRC for BO13810

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:138
Well:10
Vector:pDNR-Dual
Associated Gene/Transcript
Protein status:BO13810.pep: validated not full length
Sequenced Size:496

Clone Sequence Records

BO13810.3prime Sequence

494 bp (493 high quality bases) assembled on 2006-05-08

> BO13810.3prime
ATGGTCTAGAAAGCTTGCCGGCATGCCGCCCAGTCGCTTGTAGTCGATCT
TCTCGAGCTGCACGAGTGGCTTTAGTTGCTCGGCAAACACGCGCATTTCC
TCGCCGACATTCTCCTGCCCCGTTGGCGCCACCACAGAGAGTTCCACTAT
GTAGCTTTGTGAGATTGGCTCGTTGGCCATGTCCTGCTGCTTGCCGGGCA
CAATCTTAATGAGCTTGGAGACGGTAATCTTCATGCGCCCCTTGCGGAAC
ATATAGCCCTTTGCTATGTACTCGAACTCCAGGCGGAAGCCCATTTCCGT
GAGGAATTCCAAAATGCCATTGGTGCAGGCGCAGTCCATGCAGCTGCGTA
CCAATGTAGGCCGGCGCAGATCCACCTCGGGGTTTCCTAGGTAGCGCATC
TGAAAGGGTGCATCGCGACCAAGGGCTCGGCGCACGCGAAGAAGCAGCGG
CTGGTTGGCATTGGGCTGGCGAAGGCTCATGTCGACTGATAACT

BO13810.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:11:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG14802-PA 654 MED18-RA 190..651 480..19 2310 100 Minus
CG14802-PB 465 MED18-RB 1..462 480..19 2310 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:15:24
Subject Length Description Subject Range Query Range Score Percent Strand
MED18-RC 865 CG14802-RC 318..779 480..19 2310 100 Minus
MED18-RA 842 CG14802-RA 295..756 480..19 2310 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:15:21
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 1866562..1866801 258..19 1200 100 Minus
X 23542271 X 1866273..1866496 480..257 1120 100 Minus
Blast to na_te.dros performed on 2015-02-12 19:15:23 has no hits.

BO13810.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:12:48 Download gff for BO13810.3prime
Subject Subject Range Query Range Percent Splice Strand
MED18-PA 186..654 18..486 98   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:02:28 Download gff for BO13810.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14802-PB 1..465 18..480 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 03:53:31 Download gff for BO13810.3prime
Subject Subject Range Query Range Percent Splice Strand
MED18-RA 291..762 10..486 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:48:23 Download gff for BO13810.3prime
Subject Subject Range Query Range Percent Splice Strand
MED18-RA 291..762 10..486 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:48:23 Download gff for BO13810.3prime
Subject Subject Range Query Range Percent Splice Strand
X 1866269..1866495 258..486 98 -> Minus
X 1866563..1866807 10..257 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 03:53:31 Download gff for BO13810.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 1760302..1760528 258..486 98 -> Minus
arm_X 1760596..1760840 10..257 98   Minus

BO13810.5prime Sequence

494 bp (493 high quality bases) assembled on 2006-05-08

> BO13810.5prime
GAAGTTATCAGTCGACATGAGCCTTCGCCAGCCCAATGCCAACCAGCCGC
TGCTTCTTCGCGTGCGCCGAGCCCTTGGTCGCGATGCACCCTTTCAGATG
CGCTACCTAGGAAACCCCGAGGTGGATCTGCGCCGGCCTACATTGGTACG
CAGCTGCATGGACTGCGCCTGCACCAATGGCATTTTGGAATTCCTCACGG
AAATGGGCTTCCGCCTGGAGTTCGAGTACATAGCAAAGGGCTATATGTTC
CGCAAGGGGCGCATGAAGATTACCGTCTCCAAGCTCATTAAGATTGTGCC
CGGCAAGCAGCAGGACATGGCCAACGAGCCAATCTCACAAAGCTACATAG
TGGAACTCTCTGTGGTGGCGCCAACGGGGCAGGAGAATGTCGGCGAGGAA
ATGCGCGTGTTTGCCGAGCAACTAAAGCCACTCGTGCAGCTCGAGAAGAT
CGACTACAAGCGACTGGGCGGCATGCCGGCAAGCTTTCTAGACC

BO13810.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:11:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG14802-PA 654 MED18-RA 190..651 17..478 2310 100 Plus
CG14802-PB 465 MED18-RB 1..462 17..478 2310 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 02:50:54
Subject Length Description Subject Range Query Range Score Percent Strand
MED18-RC 865 CG14802-RC 318..779 17..478 2310 100 Plus
MED18-RA 842 CG14802-RA 295..756 17..478 2310 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 02:50:45
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 1866562..1866801 239..478 1200 100 Plus
X 23542271 X 1866273..1866496 17..240 1120 100 Plus
Blast to na_te.dros performed on 2015-02-04 02:50:49 has no hits.

BO13810.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:12:49 Download gff for BO13810.5prime
Subject Subject Range Query Range Percent Splice Strand
MED18-PA 186..654 11..479 98   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:02:30 Download gff for BO13810.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14802-PB 1..465 17..479 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 20:48:28 Download gff for BO13810.5prime
Subject Subject Range Query Range Percent Splice Strand
MED18-RA 291..762 11..487 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:24:54 Download gff for BO13810.5prime
Subject Subject Range Query Range Percent Splice Strand
MED18-RA 291..762 11..487 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:24:54 Download gff for BO13810.5prime
Subject Subject Range Query Range Percent Splice Strand
X 1866269..1866495 11..239 98 -> Plus
X 1866563..1866807 240..487 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 20:48:28 Download gff for BO13810.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 1760302..1760528 11..239 98 -> Plus
arm_X 1760596..1760840 240..487 98   Plus

BO13810.complete Sequence

496 bp assembled on 2006-10-11

GenBank Submission: FJ632931

> BO13810.complete
GAAGTTATCAGTCGACATGAGCCTTCGCCAGCCCAATGCCAACCAGCCGC
TGCTTCTTCGCGTGCGCCGAGCCCTTGGTCGCGATGCACCCTTTCAGATG
CGCTACCTAGGAAACCCCGAGGTGGATCTGCGCCGGCCTACATTGGTACG
CAGCTGCATGGACTGCGCCTGCACCAATGGCATTTTGGAATTCCTCACGG
AAATGGGCTTCCGCCTGGAGTTCGAGTACATAGCAAAGGGCTATATGTTC
CGCAAGGGGCGCATGAAGATTACCGTCTCCAAGCTCATTAAGATTGTGCC
CGGCAAGCAGCAGGACATGGCCAACGAGCCAATCTCACAAAGCTACATAG
TGGAACTCTCTGTGGTGGCGCCAACGGGGCAGGAGAATGTCGGCGAGGAA
ATGCGCGTGTTTGCCGAGCAACTAAAGCCACTCGTGCAGCTCGAGAAGAT
CGACTACAAGCGACTGGGCGGCATGCCGGCAAGCTTTCTAGACCAT

BO13810.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:18:10
Subject Length Description Subject Range Query Range Score Percent Strand
MED18-RA 654 CG14802-PA 190..651 17..478 2310 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:18:11
Subject Length Description Subject Range Query Range Score Percent Strand
MED18-RC 865 CG14802-RC 318..779 17..478 2310 100 Plus
MED18-RA 842 CG14802-RA 295..756 17..478 2310 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:18:08
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 1866562..1866801 239..478 1200 100 Plus
X 23542271 X 1866273..1866496 17..240 1120 100 Plus
Blast to na_te.dros performed on 2014-11-28 01:18:09 has no hits.

BO13810.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:44:30 Download gff for BO13810.complete
Subject Subject Range Query Range Percent Splice Strand
MED18-RA 186..654 11..479 98   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:03:05 Download gff for BO13810.complete
Subject Subject Range Query Range Percent Splice Strand
MED18-RC 314..785 11..487 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:45:36 Download gff for BO13810.complete
Subject Subject Range Query Range Percent Splice Strand
MED18-RA 295..756 17..480 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:44:31 Download gff for BO13810.complete
Subject Subject Range Query Range Percent Splice Strand
MED18-RC 314..785 11..487 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:50:21 Download gff for BO13810.complete
Subject Subject Range Query Range Percent Splice Strand
MED18-RA 295..756 17..480 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:50:21 Download gff for BO13810.complete
Subject Subject Range Query Range Percent Splice Strand
X 1866273..1866495 17..239 100 -> Plus
X 1866563..1866801 240..480 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:45:36 Download gff for BO13810.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 1760306..1760528 17..239 100 -> Plus
arm_X 1760596..1760834 240..480 99   Plus

BO13810.pep Sequence

Translation from 16 to 496

> BO13810.pep
MSLRQPNANQPLLLRVRRALGRDAPFQMRYLGNPEVDLRRPTLVRSCMDC
ACTNGILEFLTEMGFRLEFEYIAKGYMFRKGRMKITVSKLIKIVPGKQQD
MANEPISQSYIVELSVVAPTGQENVGEEMRVFAEQLKPLVQLEKIDYKRL
GGMPASFLDH

BO13810.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:18:25
Subject Length Description Subject Range Query Range Score Percent Strand
MED18-PA 217 CG14802-PA 64..217 1..154 790 100 Plus