Clone Sequence Records
BO13811.3prime Sequence
452 bp (451 high quality bases) assembled on 2006-05-08
> BO13811.3prime
ATGGTCTAGAAAGCTTGCGTCCACAATCTGCATGCGCAACTCGTTGGTCA
CGAATGACATGACAGTGTTAAGCACAGCCTGCTGAATGGAGGCGTTCTGG
ACAATCAGCGGCAGCAGCATCACCACGTCGGTGGGATGTATGTCGGCCAC
GGCCATGGTTACGTGCTGCACCAGCTGCTCTCGCTGTGCGTCCGTCAGGT
CGTTTAGGATGACTTCGCCCAGCGGACGGAATGTGCCGCTTGTCATCTTG
TAGGCGGCGATTCCGCCGGCGGCCCCGCCAACCGCCAGCCCAACGGGGCC
CAGGAGCATGCCACCCGCAAAGGAGCAGGCGGCGCAGATTGCCGCTCCCT
TGCCGGACTGCTTGACGGCGACGCGGACGTTGCGCTCGTCCGCTACGATG
GCTATCGCCTCCATCAACTCGCGCGTATCTATGGGCATGTCGACTGATAA
CT
BO13811.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:11:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3740-PA | 423 | CG3740-RA | 1..420 | 438..19 | 2100 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:22:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3740-RA | 829 | CG3740-RA | 289..708 | 438..19 | 2100 | 100 | Minus |
Mur2B-RC | 6772 | CG14796-RC | 44..262 | 237..19 | 1095 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:21:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 1668527..1668745 | 19..237 | 1095 | 100 | Plus |
X | 23542271 | X | 1668807..1669009 | 236..438 | 1015 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 22:21:59 has no hits.
BO13811.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:12:50 Download gff for
BO13811.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3740-PA | 1..423 | 16..438 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:02:31 Download gff for
BO13811.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3740-PA | 1..423 | 16..438 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 07:59:53 Download gff for
BO13811.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3740-RA | 289..714 | 12..438 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:07:38 Download gff for
BO13811.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3740-RA | 289..714 | 12..438 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:07:38 Download gff for
BO13811.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 1668518..1668744 | 12..236 | 98 | <- | Plus |
X | 1668808..1669009 | 237..438 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 07:59:53 Download gff for
BO13811.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 1562841..1563042 | 237..438 | 100 | | Plus |
arm_X | 1562551..1562777 | 12..236 | 98 | <- | Plus |
BO13811.5prime Sequence
452 bp (451 high quality bases) assembled on 2006-05-08
> BO13811.5prime
GAAGTTATCAGTCGACATGCCCATAGATACGCGCGAGTTGATGGAGGCGA
TAGCCATCGTAGCGGACGAGCGCAACGTCCGCGTCGCCGTCAAGCAGTCC
GGCAAGGGAGCGGCAATCTGCGCCGCCTGCTCCTTTGCGGGTGGCATGCT
CCTGGGCCCCGTTGGGCTGGCGGTTGGCGGGGCCGCCGGCGGAATCGCCG
CCTACAAGATGACAAGCGGCACATTCCGTCCGCTGGGCGAAGTCATCCTA
AACGACCTGACGGACGCACAGCGAGAGCAGCTGGTGCAGCACGTAACCAT
GGCCGTGGCCGACATACATCCCACCGACGTGGTGATGCTGCTGCCGCTGA
TTGTCCAGAACGCCTCCATTCAGCAGGCTGTGCTTAACACTGTCATGTCA
TTCGTGACCAACGAGTTGCGCATGCAGATTGTGGACGCAAGCTTTCTAGA
CC
BO13811.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:11:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3740-PA | 423 | CG3740-RA | 1..420 | 17..436 | 2100 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:06:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3740-RA | 829 | CG3740-RA | 289..708 | 17..436 | 2100 | 100 | Plus |
Mur2B-RC | 6772 | CG14796-RC | 44..262 | 218..436 | 1095 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 08:06:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 1668527..1668745 | 436..218 | 1095 | 100 | Minus |
X | 23542271 | X | 1668807..1669009 | 219..17 | 1015 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 08:06:11 has no hits.
BO13811.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:12:50 Download gff for
BO13811.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3740-PA | 1..423 | 17..439 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:02:33 Download gff for
BO13811.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3740-PA | 1..423 | 17..439 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 09:35:30 Download gff for
BO13811.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3740-RA | 289..714 | 17..443 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:54:31 Download gff for
BO13811.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3740-RA | 289..714 | 17..443 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:54:31 Download gff for
BO13811.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 1668518..1668744 | 219..443 | 98 | <- | Minus |
X | 1668808..1669009 | 17..218 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 09:35:30 Download gff for
BO13811.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 1562551..1562777 | 219..443 | 98 | <- | Minus |
arm_X | 1562841..1563042 | 17..218 | 100 | | Minus |
BO13811.complete Sequence
454 bp assembled on 2006-10-11
GenBank Submission: FJ632932
> BO13811.complete
GAAGTTATCAGTCGACATGCCCATAGATACGCGCGAGTTGATGGAGGCGA
TAGCCATCGTAGCGGACGAGCGCAACGTCCGCGTCGCCGTCAAGCAGTCC
GGCAAGGGAGCGGCAATCTGCGCCGCCTGCTCCTTTGCGGGTGGCATGCT
CCTGGGCCCCGTTGGGCTGGCGGTTGGCGGGGCCGCCGGCGGAATCGCCG
CCTACAAGATGACAAGCGGCACATTCCGTCCGCTGGGCGAAGTCATCCTA
AACGACCTGACGGACGCACAGCGAGAGCAGCTGGTGCAGCACGTAACCAT
GGCCGTGGCCGACATACATCCCACCGACGTGGTGATGCTGCTGCCGCTGA
TTGTCCAGAACGCCTCCATTCAGCAGGCTGTGCTTAACACTGTCATGTCA
TTCGTGACCAACGAGTTGCGCATGCAGATTGTGGACGCAAGCTTTCTAGA
CCAT
BO13811.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:56:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3740-RA | 423 | CG3740-PA | 1..420 | 17..436 | 2100 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:56:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3740-RA | 829 | CG3740-RA | 289..708 | 17..436 | 2100 | 100 | Plus |
Mur2B-RC | 6772 | CG14796-RC | 44..262 | 218..436 | 1095 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:56:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 1668527..1668745 | 436..218 | 1095 | 100 | Minus |
X | 23542271 | X | 1668807..1669009 | 219..17 | 1015 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 16:56:10 has no hits.
BO13811.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:44:32 Download gff for
BO13811.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3740-RA | 1..423 | 17..439 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:58:27 Download gff for
BO13811.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3740-RA | 271..696 | 17..443 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:56:03 Download gff for
BO13811.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3740-RA | 289..708 | 17..438 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:44:32 Download gff for
BO13811.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3740-RA | 271..696 | 17..443 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:30:27 Download gff for
BO13811.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3740-RA | 289..708 | 17..438 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:30:27 Download gff for
BO13811.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 1668808..1669009 | 17..218 | 100 | | Minus |
X | 1668523..1668744 | 219..438 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:56:03 Download gff for
BO13811.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 1562556..1562777 | 219..438 | 99 | <- | Minus |
arm_X | 1562841..1563042 | 17..218 | 100 | | Minus |
BO13811.pep Sequence
Translation from 16 to 454
> BO13811.pep
MPIDTRELMEAIAIVADERNVRVAVKQSGKGAAICAACSFAGGMLLGPVG
LAVGGAAGGIAAYKMTSGTFRPLGEVILNDLTDAQREQLVQHVTMAVADI
HPTDVVMLLPLIVQNASIQQAVLNTVMSFVTNELRMQIVDASFLDH
BO13811.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:34:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3740-PA | 140 | CG3740-PA | 1..140 | 1..140 | 689 | 100 | Plus |
CG11671-PA | 140 | CG11671-PA | 7..140 | 7..140 | 349 | 47.8 | Plus |