Clone BO13811 Report

Search the DGRC for BO13811

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:138
Well:11
Vector:pDNR-Dual
Associated Gene/TranscriptCG3740-RA
Protein status:BO13811.pep: validated full length
Sequenced Size:454

Clone Sequence Records

BO13811.3prime Sequence

452 bp (451 high quality bases) assembled on 2006-05-08

> BO13811.3prime
ATGGTCTAGAAAGCTTGCGTCCACAATCTGCATGCGCAACTCGTTGGTCA
CGAATGACATGACAGTGTTAAGCACAGCCTGCTGAATGGAGGCGTTCTGG
ACAATCAGCGGCAGCAGCATCACCACGTCGGTGGGATGTATGTCGGCCAC
GGCCATGGTTACGTGCTGCACCAGCTGCTCTCGCTGTGCGTCCGTCAGGT
CGTTTAGGATGACTTCGCCCAGCGGACGGAATGTGCCGCTTGTCATCTTG
TAGGCGGCGATTCCGCCGGCGGCCCCGCCAACCGCCAGCCCAACGGGGCC
CAGGAGCATGCCACCCGCAAAGGAGCAGGCGGCGCAGATTGCCGCTCCCT
TGCCGGACTGCTTGACGGCGACGCGGACGTTGCGCTCGTCCGCTACGATG
GCTATCGCCTCCATCAACTCGCGCGTATCTATGGGCATGTCGACTGATAA
CT

BO13811.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:11:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG3740-PA 423 CG3740-RA 1..420 438..19 2100 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:22:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG3740-RA 829 CG3740-RA 289..708 438..19 2100 100 Minus
Mur2B-RC 6772 CG14796-RC 44..262 237..19 1095 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:21:55
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 1668527..1668745 19..237 1095 100 Plus
X 23542271 X 1668807..1669009 236..438 1015 100 Plus
Blast to na_te.dros performed on 2015-02-10 22:21:59 has no hits.

BO13811.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:12:50 Download gff for BO13811.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3740-PA 1..423 16..438 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:02:31 Download gff for BO13811.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3740-PA 1..423 16..438 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 07:59:53 Download gff for BO13811.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3740-RA 289..714 12..438 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:07:38 Download gff for BO13811.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3740-RA 289..714 12..438 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:07:38 Download gff for BO13811.3prime
Subject Subject Range Query Range Percent Splice Strand
X 1668518..1668744 12..236 98 <- Plus
X 1668808..1669009 237..438 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 07:59:53 Download gff for BO13811.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 1562841..1563042 237..438 100   Plus
arm_X 1562551..1562777 12..236 98 <- Plus

BO13811.5prime Sequence

452 bp (451 high quality bases) assembled on 2006-05-08

> BO13811.5prime
GAAGTTATCAGTCGACATGCCCATAGATACGCGCGAGTTGATGGAGGCGA
TAGCCATCGTAGCGGACGAGCGCAACGTCCGCGTCGCCGTCAAGCAGTCC
GGCAAGGGAGCGGCAATCTGCGCCGCCTGCTCCTTTGCGGGTGGCATGCT
CCTGGGCCCCGTTGGGCTGGCGGTTGGCGGGGCCGCCGGCGGAATCGCCG
CCTACAAGATGACAAGCGGCACATTCCGTCCGCTGGGCGAAGTCATCCTA
AACGACCTGACGGACGCACAGCGAGAGCAGCTGGTGCAGCACGTAACCAT
GGCCGTGGCCGACATACATCCCACCGACGTGGTGATGCTGCTGCCGCTGA
TTGTCCAGAACGCCTCCATTCAGCAGGCTGTGCTTAACACTGTCATGTCA
TTCGTGACCAACGAGTTGCGCATGCAGATTGTGGACGCAAGCTTTCTAGA
CC

BO13811.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:11:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG3740-PA 423 CG3740-RA 1..420 17..436 2100 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:06:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG3740-RA 829 CG3740-RA 289..708 17..436 2100 100 Plus
Mur2B-RC 6772 CG14796-RC 44..262 218..436 1095 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 08:06:09
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 1668527..1668745 436..218 1095 100 Minus
X 23542271 X 1668807..1669009 219..17 1015 100 Minus
Blast to na_te.dros performed on 2015-02-13 08:06:11 has no hits.

BO13811.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:12:50 Download gff for BO13811.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3740-PA 1..423 17..439 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:02:33 Download gff for BO13811.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3740-PA 1..423 17..439 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 09:35:30 Download gff for BO13811.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3740-RA 289..714 17..443 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:54:31 Download gff for BO13811.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3740-RA 289..714 17..443 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:54:31 Download gff for BO13811.5prime
Subject Subject Range Query Range Percent Splice Strand
X 1668518..1668744 219..443 98 <- Minus
X 1668808..1669009 17..218 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 09:35:30 Download gff for BO13811.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 1562551..1562777 219..443 98 <- Minus
arm_X 1562841..1563042 17..218 100   Minus

BO13811.complete Sequence

454 bp assembled on 2006-10-11

GenBank Submission: FJ632932

> BO13811.complete
GAAGTTATCAGTCGACATGCCCATAGATACGCGCGAGTTGATGGAGGCGA
TAGCCATCGTAGCGGACGAGCGCAACGTCCGCGTCGCCGTCAAGCAGTCC
GGCAAGGGAGCGGCAATCTGCGCCGCCTGCTCCTTTGCGGGTGGCATGCT
CCTGGGCCCCGTTGGGCTGGCGGTTGGCGGGGCCGCCGGCGGAATCGCCG
CCTACAAGATGACAAGCGGCACATTCCGTCCGCTGGGCGAAGTCATCCTA
AACGACCTGACGGACGCACAGCGAGAGCAGCTGGTGCAGCACGTAACCAT
GGCCGTGGCCGACATACATCCCACCGACGTGGTGATGCTGCTGCCGCTGA
TTGTCCAGAACGCCTCCATTCAGCAGGCTGTGCTTAACACTGTCATGTCA
TTCGTGACCAACGAGTTGCGCATGCAGATTGTGGACGCAAGCTTTCTAGA
CCAT

BO13811.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:56:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG3740-RA 423 CG3740-PA 1..420 17..436 2100 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:56:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG3740-RA 829 CG3740-RA 289..708 17..436 2100 100 Plus
Mur2B-RC 6772 CG14796-RC 44..262 218..436 1095 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:56:09
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 1668527..1668745 436..218 1095 100 Minus
X 23542271 X 1668807..1669009 219..17 1015 100 Minus
Blast to na_te.dros performed on 2014-11-27 16:56:10 has no hits.

BO13811.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:44:32 Download gff for BO13811.complete
Subject Subject Range Query Range Percent Splice Strand
CG3740-RA 1..423 17..439 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:58:27 Download gff for BO13811.complete
Subject Subject Range Query Range Percent Splice Strand
CG3740-RA 271..696 17..443 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:56:03 Download gff for BO13811.complete
Subject Subject Range Query Range Percent Splice Strand
CG3740-RA 289..708 17..438 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:44:32 Download gff for BO13811.complete
Subject Subject Range Query Range Percent Splice Strand
CG3740-RA 271..696 17..443 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:30:27 Download gff for BO13811.complete
Subject Subject Range Query Range Percent Splice Strand
CG3740-RA 289..708 17..438 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:30:27 Download gff for BO13811.complete
Subject Subject Range Query Range Percent Splice Strand
X 1668808..1669009 17..218 100   Minus
X 1668523..1668744 219..438 99 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:56:03 Download gff for BO13811.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 1562556..1562777 219..438 99 <- Minus
arm_X 1562841..1563042 17..218 100   Minus

BO13811.pep Sequence

Translation from 16 to 454

> BO13811.pep
MPIDTRELMEAIAIVADERNVRVAVKQSGKGAAICAACSFAGGMLLGPVG
LAVGGAAGGIAAYKMTSGTFRPLGEVILNDLTDAQREQLVQHVTMAVADI
HPTDVVMLLPLIVQNASIQQAVLNTVMSFVTNELRMQIVDASFLDH

BO13811.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:34:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG3740-PA 140 CG3740-PA 1..140 1..140 689 100 Plus
CG11671-PA 140 CG11671-PA 7..140 7..140 349 47.8 Plus