Clone BO13813 Report

Search the DGRC for BO13813

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:138
Well:13
Vector:pDNR-Dual
Associated Gene/TranscriptCG14414-RA
Protein status:BO13813.pep: validated not full length
Sequenced Size:478

Clone Sequence Records

BO13813.3prime Sequence

476 bp (475 high quality bases) assembled on 2006-05-08

> BO13813.3prime
ATGGTCTAGAAAGCTTGCGTGGCGCTTGGGACGCTGCTGGTGATGATATG
GAGCCGATGACTTTCCGTAGCGCTGCGAACCGTCGCGATCCTTGTTAAAC
TGATAGCGCTGGATGAAGGGCACGTTGGCCTCGCCCCTGCCCGCTGTATT
CAGCTCGAGATTGTCGTCTGTCTGGCGCTCCAACATTTTCAGCTTGGCCT
CAATGGCCCGAATGGCCTCCGTTTTGCTGACCTTCTCCTCGCGTTTACCT
GTGCCCAAGGCCGGTATATCCAGGCGCGGCTTTGGCTTCTGCGTTTCATC
ATATTTAATGTTCTTGGCCAAACGCACGGCTATCGAGCGATTTCCCACGC
TGGTTCCGTCCAGTTTCAGTAGCGCATTGGTGGCTCCCTCGTTCTGCGCA
AAGGTGACGAAGGCGTAGCCCCTGGATTGTCCCACCATGGGACCGCCCTT
GTGGAACAGCATGTCGACTGATAACT

BO13813.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:11:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG14414-PB 618 CG14414-RB 167..615 467..19 2245 100 Minus
CG14414-PC 447 CG14414-RC 1..444 462..19 2220 100 Minus
CG14414-PA 447 CG14414-RA 1..444 462..19 2220 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 04:16:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG14414-RE 849 CG14414-RE 257..705 467..19 2245 100 Minus
CG14414-RD 825 CG14414-RD 233..681 467..19 2245 100 Minus
CG14414-RA 779 CG14414-RA 187..635 467..19 2245 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 04:16:17
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 14581745..14582030 304..19 1415 99.7 Minus
X 23542271 X 14581579..14581675 396..300 485 100 Minus
X 23542271 X 14580966..14581039 467..394 370 100 Minus
Blast to na_te.dros performed on 2015-02-01 04:16:20 has no hits.

BO13813.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:12:51 Download gff for BO13813.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14414-PB 167..618 18..467 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:02:34 Download gff for BO13813.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14414-PB 167..618 18..467 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 15:03:34 Download gff for BO13813.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14414-RA 187..641 12..467 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 05:45:27 Download gff for BO13813.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14414-RA 187..641 12..467 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 05:45:27 Download gff for BO13813.3prime
Subject Subject Range Query Range Percent Splice Strand
X 14580966..14581039 394..467 100 -> Minus
X 14581582..14581674 301..393 100 -> Minus
X 14581749..14582036 12..300 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 15:03:34 Download gff for BO13813.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 14474999..14475072 394..467 100 -> Minus
arm_X 14475615..14475707 301..393 100 -> Minus
arm_X 14475782..14476069 12..300 98   Minus

BO13813.5prime Sequence

476 bp (475 high quality bases) assembled on 2006-05-08

> BO13813.5prime
GAAGTTATCAGTCGACATGCTGTTCCACAAGGGCGGTCCCATGGTGGGAC
AATCCAGGGGCTACGCCTTCGTCACCTTTGCGCAGAACGAGGGAGCCACC
AATGCGCTACTGAAACTGGACGGAACCAGCGTGGGAAATCGCTCGATAGC
CGTGCGTTTGGCCAAGAACATTAAATATGATGAAACGCAGAAGCCAAAGC
CGCGCCTGGATATACCGGCCTTGGGCACAGGTAAACGCGAGGAGAAGGTC
AGCAAAACGGAGGCCATTCGGGCCATTGAGGCCAAGCTGAAAATGTTGGA
GCGCCAGACAGACGACAATCTCGAGCTGAATACAGCGGGCAGGGGCGAGG
CCAACGTGCCCTTCATCCAGCGCTATCAGTTTAACAAGGATCGCGACGGT
TCGCAGCGCTACGGAAAGTCATCGGCTCCATATCATCACCAGCAGCGTCC
CAAGCGCCACGCAAGCTTTCTAGACC

BO13813.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:11:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG14414-PB 618 CG14414-RB 167..615 12..460 2245 100 Plus
CG14414-PC 447 CG14414-RC 1..444 17..460 2220 100 Plus
CG14414-PA 447 CG14414-RA 1..444 17..460 2220 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:11:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG14414-RE 849 CG14414-RE 257..705 12..460 2245 100 Plus
CG14414-RD 825 CG14414-RD 233..681 12..460 2245 100 Plus
CG14414-RA 779 CG14414-RA 187..635 12..460 2245 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:11:30
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 14581745..14582030 175..460 1415 99.7 Plus
X 23542271 X 14581579..14581675 83..179 485 100 Plus
X 23542271 X 14580966..14581039 12..85 370 100 Plus
Blast to na_te.dros performed on 2015-02-12 19:11:32 has no hits.

BO13813.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:12:52 Download gff for BO13813.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14414-PB 167..618 12..461 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:02:35 Download gff for BO13813.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14414-PB 167..618 12..461 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:15:40 Download gff for BO13813.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14414-RA 187..641 12..467 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:56:19 Download gff for BO13813.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14414-RA 187..641 12..467 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:56:19 Download gff for BO13813.5prime
Subject Subject Range Query Range Percent Splice Strand
X 14580966..14581039 12..85 100 -> Plus
X 14581582..14581674 86..178 100 -> Plus
X 14581749..14582036 179..467 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:15:40 Download gff for BO13813.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 14474999..14475072 12..85 100 -> Plus
arm_X 14475615..14475707 86..178 100 -> Plus
arm_X 14475782..14476069 179..467 98   Plus

BO13813.complete Sequence

478 bp assembled on 2006-10-11

GenBank Submission: FJ632933

> BO13813.complete
GAAGTTATCAGTCGACATGCTGTTCCACAAGGGCGGTCCCATGGTGGGAC
AATCCAGGGGCTACGCCTTCGTCACCTTTGCGCAGAACGAGGGAGCCACC
AATGCGCTACTGAAACTGGACGGAACCAGCGTGGGAAATCGCTCGATAGC
CGTGCGTTTGGCCAAGAACATTAAATATGATGAAACGCAGAAGCCAAAGC
CGCGCCTGGATATACCGGCCTTGGGCACAGGTAAACGCGAGGAGAAGGTC
AGCAAAACGGAGGCCATTCGGGCCATTGAGGCCAAGCTGAAAATGTTGGA
GCGCCAGACAGACGACAATCTCGAGCTGAATACAGCGGGCAGGGGCGAGG
CCAACGTGCCCTTCATCCAGCGCTATCAGTTTAACAAGGATCGCGACGGT
TCGCAGCGCTACGGAAAGTCATCGGCTCCATATCATCACCAGCAGCGTCC
CAAGCGCCACGCAAGCTTTCTAGACCAT

BO13813.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:17:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG14414-RE 642 CG14414-PE 191..639 12..460 2245 100 Plus
CG14414-RD 618 CG14414-PD 167..615 12..460 2245 100 Plus
CG14414-RA 447 CG14414-PA 1..444 17..460 2220 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:17:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG14414-RE 849 CG14414-RE 257..705 12..460 2245 100 Plus
CG14414-RD 825 CG14414-RD 233..681 12..460 2245 100 Plus
CG14414-RA 779 CG14414-RA 187..635 12..460 2245 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:17:27
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 14581745..14582030 175..460 1415 99.7 Plus
X 23542271 X 14581579..14581675 83..179 485 100 Plus
X 23542271 X 14580966..14581039 12..85 370 100 Plus
Blast to na_te.dros performed on 2014-11-28 01:17:28 has no hits.

BO13813.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:44:34 Download gff for BO13813.complete
Subject Subject Range Query Range Percent Splice Strand
CG14414-RB 167..618 12..461 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:58:29 Download gff for BO13813.complete
Subject Subject Range Query Range Percent Splice Strand
CG14414-RC 241..695 12..467 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:45:14 Download gff for BO13813.complete
Subject Subject Range Query Range Percent Splice Strand
CG14414-RA 192..635 17..462 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:44:35 Download gff for BO13813.complete
Subject Subject Range Query Range Percent Splice Strand
CG14414-RC 241..695 12..467 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:50:01 Download gff for BO13813.complete
Subject Subject Range Query Range Percent Splice Strand
CG14414-RA 192..635 17..462 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:50:01 Download gff for BO13813.complete
Subject Subject Range Query Range Percent Splice Strand
X 14580971..14581039 17..85 100 -> Plus
X 14581582..14581674 86..178 100 -> Plus
X 14581749..14582030 179..462 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:45:14 Download gff for BO13813.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 14475004..14475072 17..85 100 -> Plus
arm_X 14475615..14475707 86..178 100 -> Plus
arm_X 14475782..14476063 179..462 99   Plus

BO13813.pep Sequence

Translation from 16 to 478

> BO13813.pep
MLFHKGGPMVGQSRGYAFVTFAQNEGATNALLKLDGTSVGNRSIAVRLAK
NIKYDETQKPKPRLDIPALGTGKREEKVSKTEAIRAIEAKLKMLERQTDD
NLELNTAGRGEANVPFIQRYQFNKDRDGSQRYGKSSAPYHHQQRPKRHAS
FLDH

BO13813.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:35:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG14414-PA 148 CG14414-PA 1..148 1..148 766 100 Plus
CG14414-PC 148 CG14414-PC 1..148 1..148 766 100 Plus
CG14414-PD 205 CG14414-PD 58..205 1..148 766 100 Plus
CG14414-PE 213 CG14414-PE 66..213 1..148 766 100 Plus