Clone Sequence Records
BO13813.3prime Sequence
476 bp (475 high quality bases) assembled on 2006-05-08
> BO13813.3prime
ATGGTCTAGAAAGCTTGCGTGGCGCTTGGGACGCTGCTGGTGATGATATG
GAGCCGATGACTTTCCGTAGCGCTGCGAACCGTCGCGATCCTTGTTAAAC
TGATAGCGCTGGATGAAGGGCACGTTGGCCTCGCCCCTGCCCGCTGTATT
CAGCTCGAGATTGTCGTCTGTCTGGCGCTCCAACATTTTCAGCTTGGCCT
CAATGGCCCGAATGGCCTCCGTTTTGCTGACCTTCTCCTCGCGTTTACCT
GTGCCCAAGGCCGGTATATCCAGGCGCGGCTTTGGCTTCTGCGTTTCATC
ATATTTAATGTTCTTGGCCAAACGCACGGCTATCGAGCGATTTCCCACGC
TGGTTCCGTCCAGTTTCAGTAGCGCATTGGTGGCTCCCTCGTTCTGCGCA
AAGGTGACGAAGGCGTAGCCCCTGGATTGTCCCACCATGGGACCGCCCTT
GTGGAACAGCATGTCGACTGATAACT
BO13813.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:11:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14414-PB | 618 | CG14414-RB | 167..615 | 467..19 | 2245 | 100 | Minus |
CG14414-PC | 447 | CG14414-RC | 1..444 | 462..19 | 2220 | 100 | Minus |
CG14414-PA | 447 | CG14414-RA | 1..444 | 462..19 | 2220 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 04:16:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14414-RE | 849 | CG14414-RE | 257..705 | 467..19 | 2245 | 100 | Minus |
CG14414-RD | 825 | CG14414-RD | 233..681 | 467..19 | 2245 | 100 | Minus |
CG14414-RA | 779 | CG14414-RA | 187..635 | 467..19 | 2245 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 04:16:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 14581745..14582030 | 304..19 | 1415 | 99.7 | Minus |
X | 23542271 | X | 14581579..14581675 | 396..300 | 485 | 100 | Minus |
X | 23542271 | X | 14580966..14581039 | 467..394 | 370 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-01 04:16:20 has no hits.
BO13813.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:12:51 Download gff for
BO13813.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14414-PB | 167..618 | 18..467 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:02:34 Download gff for
BO13813.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14414-PB | 167..618 | 18..467 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 15:03:34 Download gff for
BO13813.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14414-RA | 187..641 | 12..467 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 05:45:27 Download gff for
BO13813.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14414-RA | 187..641 | 12..467 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 05:45:27 Download gff for
BO13813.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 14580966..14581039 | 394..467 | 100 | -> | Minus |
X | 14581582..14581674 | 301..393 | 100 | -> | Minus |
X | 14581749..14582036 | 12..300 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 15:03:34 Download gff for
BO13813.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 14474999..14475072 | 394..467 | 100 | -> | Minus |
arm_X | 14475615..14475707 | 301..393 | 100 | -> | Minus |
arm_X | 14475782..14476069 | 12..300 | 98 | | Minus |
BO13813.5prime Sequence
476 bp (475 high quality bases) assembled on 2006-05-08
> BO13813.5prime
GAAGTTATCAGTCGACATGCTGTTCCACAAGGGCGGTCCCATGGTGGGAC
AATCCAGGGGCTACGCCTTCGTCACCTTTGCGCAGAACGAGGGAGCCACC
AATGCGCTACTGAAACTGGACGGAACCAGCGTGGGAAATCGCTCGATAGC
CGTGCGTTTGGCCAAGAACATTAAATATGATGAAACGCAGAAGCCAAAGC
CGCGCCTGGATATACCGGCCTTGGGCACAGGTAAACGCGAGGAGAAGGTC
AGCAAAACGGAGGCCATTCGGGCCATTGAGGCCAAGCTGAAAATGTTGGA
GCGCCAGACAGACGACAATCTCGAGCTGAATACAGCGGGCAGGGGCGAGG
CCAACGTGCCCTTCATCCAGCGCTATCAGTTTAACAAGGATCGCGACGGT
TCGCAGCGCTACGGAAAGTCATCGGCTCCATATCATCACCAGCAGCGTCC
CAAGCGCCACGCAAGCTTTCTAGACC
BO13813.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:11:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14414-PB | 618 | CG14414-RB | 167..615 | 12..460 | 2245 | 100 | Plus |
CG14414-PC | 447 | CG14414-RC | 1..444 | 17..460 | 2220 | 100 | Plus |
CG14414-PA | 447 | CG14414-RA | 1..444 | 17..460 | 2220 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:11:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14414-RE | 849 | CG14414-RE | 257..705 | 12..460 | 2245 | 100 | Plus |
CG14414-RD | 825 | CG14414-RD | 233..681 | 12..460 | 2245 | 100 | Plus |
CG14414-RA | 779 | CG14414-RA | 187..635 | 12..460 | 2245 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:11:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 14581745..14582030 | 175..460 | 1415 | 99.7 | Plus |
X | 23542271 | X | 14581579..14581675 | 83..179 | 485 | 100 | Plus |
X | 23542271 | X | 14580966..14581039 | 12..85 | 370 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 19:11:32 has no hits.
BO13813.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:12:52 Download gff for
BO13813.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14414-PB | 167..618 | 12..461 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:02:35 Download gff for
BO13813.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14414-PB | 167..618 | 12..461 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:15:40 Download gff for
BO13813.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14414-RA | 187..641 | 12..467 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:56:19 Download gff for
BO13813.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14414-RA | 187..641 | 12..467 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:56:19 Download gff for
BO13813.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 14580966..14581039 | 12..85 | 100 | -> | Plus |
X | 14581582..14581674 | 86..178 | 100 | -> | Plus |
X | 14581749..14582036 | 179..467 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:15:40 Download gff for
BO13813.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 14474999..14475072 | 12..85 | 100 | -> | Plus |
arm_X | 14475615..14475707 | 86..178 | 100 | -> | Plus |
arm_X | 14475782..14476069 | 179..467 | 98 | | Plus |
BO13813.complete Sequence
478 bp assembled on 2006-10-11
GenBank Submission: FJ632933
> BO13813.complete
GAAGTTATCAGTCGACATGCTGTTCCACAAGGGCGGTCCCATGGTGGGAC
AATCCAGGGGCTACGCCTTCGTCACCTTTGCGCAGAACGAGGGAGCCACC
AATGCGCTACTGAAACTGGACGGAACCAGCGTGGGAAATCGCTCGATAGC
CGTGCGTTTGGCCAAGAACATTAAATATGATGAAACGCAGAAGCCAAAGC
CGCGCCTGGATATACCGGCCTTGGGCACAGGTAAACGCGAGGAGAAGGTC
AGCAAAACGGAGGCCATTCGGGCCATTGAGGCCAAGCTGAAAATGTTGGA
GCGCCAGACAGACGACAATCTCGAGCTGAATACAGCGGGCAGGGGCGAGG
CCAACGTGCCCTTCATCCAGCGCTATCAGTTTAACAAGGATCGCGACGGT
TCGCAGCGCTACGGAAAGTCATCGGCTCCATATCATCACCAGCAGCGTCC
CAAGCGCCACGCAAGCTTTCTAGACCAT
BO13813.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:17:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14414-RE | 642 | CG14414-PE | 191..639 | 12..460 | 2245 | 100 | Plus |
CG14414-RD | 618 | CG14414-PD | 167..615 | 12..460 | 2245 | 100 | Plus |
CG14414-RA | 447 | CG14414-PA | 1..444 | 17..460 | 2220 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:17:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14414-RE | 849 | CG14414-RE | 257..705 | 12..460 | 2245 | 100 | Plus |
CG14414-RD | 825 | CG14414-RD | 233..681 | 12..460 | 2245 | 100 | Plus |
CG14414-RA | 779 | CG14414-RA | 187..635 | 12..460 | 2245 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:17:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 14581745..14582030 | 175..460 | 1415 | 99.7 | Plus |
X | 23542271 | X | 14581579..14581675 | 83..179 | 485 | 100 | Plus |
X | 23542271 | X | 14580966..14581039 | 12..85 | 370 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 01:17:28 has no hits.
BO13813.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:44:34 Download gff for
BO13813.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14414-RB | 167..618 | 12..461 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:58:29 Download gff for
BO13813.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14414-RC | 241..695 | 12..467 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:45:14 Download gff for
BO13813.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14414-RA | 192..635 | 17..462 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:44:35 Download gff for
BO13813.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14414-RC | 241..695 | 12..467 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:50:01 Download gff for
BO13813.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14414-RA | 192..635 | 17..462 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:50:01 Download gff for
BO13813.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 14580971..14581039 | 17..85 | 100 | -> | Plus |
X | 14581582..14581674 | 86..178 | 100 | -> | Plus |
X | 14581749..14582030 | 179..462 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:45:14 Download gff for
BO13813.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 14475004..14475072 | 17..85 | 100 | -> | Plus |
arm_X | 14475615..14475707 | 86..178 | 100 | -> | Plus |
arm_X | 14475782..14476063 | 179..462 | 99 | | Plus |
BO13813.pep Sequence
Translation from 16 to 478
> BO13813.pep
MLFHKGGPMVGQSRGYAFVTFAQNEGATNALLKLDGTSVGNRSIAVRLAK
NIKYDETQKPKPRLDIPALGTGKREEKVSKTEAIRAIEAKLKMLERQTDD
NLELNTAGRGEANVPFIQRYQFNKDRDGSQRYGKSSAPYHHQQRPKRHAS
FLDH
BO13813.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:35:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14414-PA | 148 | CG14414-PA | 1..148 | 1..148 | 766 | 100 | Plus |
CG14414-PC | 148 | CG14414-PC | 1..148 | 1..148 | 766 | 100 | Plus |
CG14414-PD | 205 | CG14414-PD | 58..205 | 1..148 | 766 | 100 | Plus |
CG14414-PE | 213 | CG14414-PE | 66..213 | 1..148 | 766 | 100 | Plus |