Clone Sequence Records
BO13815.3prime Sequence
721 bp (666 high quality bases) assembled on 2006-05-08
> BO13815.3prime
ATGGTCTAGAAAGCTTGCCGGCACGTAGCCGTAGTTGTGATAGGGCTGGG
CGTACTGCGCCTGCGCCTGTGCGGGATGTGCCGCCAGGTAGGGCAGCGTT
CCAAAGGTATAGGCCGGCAGAGCGGGCGGCTGACCCGCTCCCGACGTGGA
TCCTCCCGCCTGCGACTTGGTGGAGCTCTTCGGCGAGACCTGCGGCTTGC
GCAGCGTGTTGGCCGAGTAGCCAGTCTTCGGCCACCGCTTGCCGGCAAAC
AAGTCGGCCACATAGGCACTCGTCAGCCAAGCGAACACCACGCCCAATGC
CGCCCCCGCCAGGACGTCGCTCCAGTGGTGGTAATAGTCGATGATCCGAG
TCAGCGATACGTACCAGCCGAACATGACGAAGAGGAACTGCAGCAGATGC
TTCAGCAGCTTGGAGACGCGCGTACTGAGCGCCGCCTGCAGGTAGATGGC
CAGGTAGAGCATAGCATACATGGCCATGCTGGCGTGGCCGCTTGGGAAGG
ACTGGTAGAGCTCCTTGAACTGGTAGTCGGTCATGTTGGCGTTGCTGCAC
GTAAAACTGTCTATGTAGCGTCCCAGGTTCTGGGCGTCCTGGCAGCTGCT
TCCGTCCGGCAGCATGGGCTGGCACACGGCGAGGAAGTGCGGTCGCAGAC
GCCCGAGGCACAGCTTCGTCAGCATCGTGGTGAACGTGACCATGGCGAGG
CCGTACAGGTAGAAGATAACC
BO13815.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:11:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11438-PA | 1026 | CG11438-RA | 321..1023 | 721..19 | 3515 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 11:40:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11438-RB | 2458 | CG11438-RB | 1612..2314 | 721..19 | 3515 | 100 | Minus |
| CG11438-RA | 1245 | CG11438-RA | 399..1101 | 721..19 | 3515 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 11:40:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 22467230..22467932 | 721..19 | 3515 | 100 | Minus |
Blast to na_te.dros performed on 2015-01-31 11:40:30 has no hits.
BO13815.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:12:53 Download gff for
BO13815.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11438-PA | 321..1026 | 16..721 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:02:37 Download gff for
BO13815.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11438-PA | 321..1026 | 16..721 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:51:22 Download gff for
BO13815.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11438-RA | 399..1107 | 12..721 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:57:34 Download gff for
BO13815.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11438-RA | 399..1107 | 12..721 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:57:34 Download gff for
BO13815.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 22467230..22467938 | 12..721 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:51:22 Download gff for
BO13815.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 22460330..22461038 | 12..721 | 99 | | Minus |
BO13815.5prime Sequence
856 bp (744 high quality bases) assembled on 2006-05-08
> BO13815.5prime
GAAGTTATCAGTCGACATGTCCAAGTATTCGAAGCTGGCCCGCGGGTTCT
GCGACCTGCTGATCTGGGTGGCCCTCAGCGTGGCCAGTGTGCTGCTCCAC
AAGATGGGGCGTCCCTTCCGGCGCGGCTTCTTCTGTGGCGACGAGACCCT
CAGCTATCCAGCGCGCGACGGCACCATCAGCTCCAAGGTGATCATCGCCA
TCGTCCTCGGAGTGCCCAACGCCGTGATCGTAGTGGTGGAGTTGTTTAGG
CAGCTGCCCGGTGGGCCGCTTAGAGAGGCGGGCGGTAAGCGGGATAGCTG
CCGGATAGCCCACCGCCTCGGGGTCCTTTATCGCCAGGTTATCTTCTACC
TGTACGGCCTCGCCATGGTCACGTTCACCACGATGCTGACGAAGCTGTGC
CTCGGGCGTCTGCGACCGCACTTCCTCGCCGTGTGCCAGCCCATGCTGCC
GGACGGAAGCAGCTGCCAGGACGCCCAGAACCTGGGACGCTACATAGACA
GTTTTACGTGCAGCAACGCCAACATGACCGACTACCAGTTCAAGGAGCTC
TACCAGTCCTTCCCAAGCGGCCACGCCAGCATGGCCATGTATGCTATGCT
CTACCTGGCCATCTACCTGCAGGCGGCGCTCAGTACGCGCGTCTCCAAGC
TGCTGAAGCATCTGCTGCAGTTCCTCTTCGTCATGTTCGGCTGGTACGTA
TCGCTGACTCGGATCATCGACTATTACCACCACTGGAGCGACGTCCTGGC
GGGGGCGGCATTGGGCGTGGTGTTCGCTTGGCTGACGAGTGCCTATGTGG
CCGACTTGTTTGCCGGCAAGCGGTGGCCGAAGACTGGCTACTCGGCCAAC
ACGCTG
BO13815.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:11:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11438-PA | 1026 | CG11438-RA | 1..840 | 17..856 | 4200 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:06:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11438-RB | 2458 | CG11438-RB | 1291..2131 | 16..856 | 4205 | 100 | Plus |
| CG11438-RA | 1245 | CG11438-RA | 78..918 | 16..856 | 4205 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 02:06:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 22466909..22467749 | 16..856 | 4205 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 02:06:41 has no hits.
BO13815.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:12:54 Download gff for
BO13815.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11438-PA | 1..840 | 17..856 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:02:38 Download gff for
BO13815.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11438-PA | 1..840 | 17..856 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:07:38 Download gff for
BO13815.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11438-RA | 74..918 | 9..856 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:37:36 Download gff for
BO13815.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11438-RA | 74..918 | 9..856 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:37:36 Download gff for
BO13815.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 22466905..22467749 | 9..856 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:07:38 Download gff for
BO13815.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 22460005..22460849 | 9..856 | 99 | | Plus |
BO13815.complete Sequence
1057 bp assembled on 2006-10-11
GenBank Submission: FJ632934
> BO13815.complete
GAAGTTATCAGTCGACATGTCCAAGTATTCGAAGCTGGCCCGCGGGTTCT
GCGACCTGCTGATCTGGGTGGCCCTCAGCGTGGCCAGTGTGCTGCTCCAC
AAGATGGGGCGTCCCTTCCGGCGCGGCTTCTTCTGTGGCGACGAGACCCT
CAGCTATCCAGCGCGCGACGGCACCATCAGCTCCAAGGTGATCATCGCCA
TCGTCCTCGGAGTGCCCAACGCCGTGATCGTAGTGGTGGAGTTGTTTAGG
CAGCTGCCCGGTGGGCCGCTTAGAGAGGCGGGCGGTAAGCGGGATAGCTG
CCGGATAGCCCACCGCCTCGGGGTCCTTTATCGCCAGGTTATCTTCTACC
TGTACGGCCTCGCCATGGTCACGTTCACCACGATGCTGACGAAGCTGTGC
CTCGGGCGTCTGCGACCGCACTTCCTCGCCGTGTGCCAGCCCATGCTGCC
GGACGGAAGCAGCTGCCAGGACGCCCAGAACCTGGGACGCTACATAGACA
GTTTTACGTGCAGCAACGCCAACATGACCGACTACCAGTTCAAGGAGCTC
TACCAGTCCTTCCCAAGCGGCCACGCCAGCATGGCCATGTATGCTATGCT
CTACCTGGCCATCTACCTGCAGGCGGCGCTCAGTACGCGCGTCTCCAAGC
TGCTGAAGCATCTGCTGCAGTTCCTCTTCGTCATGTTCGGCTGGTACGTA
TCGCTGACTCGGATCATCGACTATTACCACCACTGGAGCGACGTCCTGGC
GGGGGCGGCATTGGGCGTGGTGTTCGCTTGGCTGACGAGTGCCTATGTGG
CCGACTTGTTTGCCGGCAAGCGGTGGCCGAAGACTGGCTACTCGGCCAAC
ACGCTGCGCAAGCCGCAGGTCTCGCCGAAGAGCTCCACCAAGTCGCAGGC
GGGAGGATCCACGTCGGGAGCGGGTCAGCCGCCCGCTCTGCCGGCCTATA
CCTTTGGAACGCTGCCCTACCTGGCGGCACATCCCGCACAGGCGCAGGCG
CAGTACGCCCAGCCCTATCACAACTACGGCTACGTGCCGGCAAGCTTTCT
AGACCAT
BO13815.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:22:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11438-RB | 1026 | CG11438-PB | 1..1023 | 17..1039 | 5115 | 100 | Plus |
| CG11438-RA | 1026 | CG11438-PA | 1..1023 | 17..1039 | 5115 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:22:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11438-RB | 2458 | CG11438-RB | 1291..2314 | 16..1039 | 5120 | 100 | Plus |
| CG11438-RA | 1245 | CG11438-RA | 78..1101 | 16..1039 | 5120 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:22:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 22466909..22467932 | 16..1039 | 5120 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:22:51 has no hits.
BO13815.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:44:37 Download gff for
BO13815.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11438-RA | 1..1026 | 17..1042 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:58:32 Download gff for
BO13815.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11438-RA | 74..1107 | 9..1046 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:07:05 Download gff for
BO13815.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11438-RA | 79..1101 | 17..1041 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:44:37 Download gff for
BO13815.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11438-RA | 74..1107 | 9..1046 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:20:22 Download gff for
BO13815.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11438-RA | 79..1101 | 17..1041 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:20:22 Download gff for
BO13815.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 22466910..22467932 | 17..1041 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:07:05 Download gff for
BO13815.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 22460010..22461032 | 17..1041 | 99 | | Plus |
BO13815.pep Sequence
Translation from 16 to 1057
> BO13815.pep
MSKYSKLARGFCDLLIWVALSVASVLLHKMGRPFRRGFFCGDETLSYPAR
DGTISSKVIIAIVLGVPNAVIVVVELFRQLPGGPLREAGGKRDSCRIAHR
LGVLYRQVIFYLYGLAMVTFTTMLTKLCLGRLRPHFLAVCQPMLPDGSSC
QDAQNLGRYIDSFTCSNANMTDYQFKELYQSFPSGHASMAMYAMLYLAIY
LQAALSTRVSKLLKHLLQFLFVMFGWYVSLTRIIDYYHHWSDVLAGAALG
VVFAWLTSAYVADLFAGKRWPKTGYSANTLRKPQVSPKSSTKSQAGGSTS
GAGQPPALPAYTFGTLPYLAAHPAQAQAQYAQPYHNYGYVPASFLDH
BO13815.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:34:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11438-PB | 341 | CG11438-PB | 1..341 | 1..341 | 1794 | 100 | Plus |
| CG11438-PA | 341 | CG11438-PA | 1..341 | 1..341 | 1794 | 100 | Plus |
| wun-PA | 300 | CG8804-PA | 8..291 | 7..287 | 577 | 41.5 | Plus |
| wun-PB | 379 | CG8804-PB | 87..370 | 7..287 | 577 | 41.5 | Plus |
| wun-PC | 364 | CG8804-PC | 87..343 | 7..258 | 548 | 42.1 | Plus |
