Clone BO13817 Report

Search the DGRC for BO13817

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:138
Well:17
Vector:pDNR-Dual
Associated Gene/TranscriptCG11413-RA
Protein status:BO13817.pep: validated full length
Sequenced Size:460

Clone Sequence Records

BO13817.3prime Sequence

458 bp (457 high quality bases) assembled on 2006-05-08

> BO13817.3prime
ATGGTCTAGAAAGCTTGCTAGCTTGCCCTTGCCATGGTGTCCATGATGTC
CATGATGTCCGTGGCCGTGACCACCGCCACCTCCGCCAACCGCCACGGGC
TTGACCACCACCACCGGCTTCACAATCACCGGCTTTATGATCACTGGCTT
TGGTTTCACGAACTTGGAGAGCAGCTGGCTGGGATCCTTGAGGATAGCGG
GCTTGGGCGGCAGTTTGGCGAGCAGCTGGCTGGGATCTGGGAGAGCTGGT
TTGGATTGCGCGATTTTGGCTAGTAATTTAGAGGGATCCTTGAGAAAGTC
CGGCTTTGGCGGTAGCTTGGCTAGCAACTGGCTGGGATCCGGCAGCGCTG
GCTTGGTTTTCTGGATGGTGATCGTGGCCTGGGCGCAGACACACAGGCAA
GCTCCGATGACCAGGAGCAGCAGGTGCCTCTTGAGAAGATCCATGTCGAC
TGATAACT

BO13817.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:11:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG11413-PA 429 CG11413-RA 1..426 444..19 2130 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 21:37:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG11413-RA 602 CG11413-RA 9..435 445..19 2135 100 Minus
CG4622-RC 2762 CG4622-RC 372..798 19..445 2135 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 21:37:38
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 24536198..24536624 445..19 2135 100 Minus
Blast to na_te.dros performed on 2015-02-11 21:37:39 has no hits.

BO13817.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:12:57 Download gff for BO13817.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11413-PA 1..429 15..444 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:02:42 Download gff for BO13817.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11413-PA 1..429 15..444 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-27 20:26:58 Download gff for BO13817.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11413-RA 2..445 5..452 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:32:32 Download gff for BO13817.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4622-RC 362..805 5..452 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 00:32:32 Download gff for BO13817.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 24536191..24536634 5..452 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-27 20:26:58 Download gff for BO13817.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 20423714..20424157 5..452 98   Minus

BO13817.5prime Sequence

458 bp (457 high quality bases) assembled on 2006-05-08

> BO13817.5prime
GAAGTTATCAGTCGACATGGATCTTCTCAAGAGGCACCTGCTGCTCCTGG
TCATCGGAGCTTGCCTGTGTGTCTGCGCCCAGGCCACGATCACCATCCAG
AAAACCAAGCCAGCGCTGCCGGATCCCAGCCAGTTGCTAGCCAAGCTACC
GCCAAAGCCGGACTTTCTCAAGGATCCCTCTAAATTACTAGCCAAAATCG
CGCAATCCAAACCAGCTCTCCCAGATCCCAGCCAGCTGCTCGCCAAACTG
CCGCCCAAGCCCGCTATCCTCAAGGATCCCAGCCAGCTGCTCTCCAAGTT
CGTGAAACCAAAGCCAGTGATCATAAAGCCGGTGATTGTGAAGCCGGTGG
TGGTGGTCAAGCCCGTGGCGGTTGGCGGAGGTGGCGGTGGTCACGGCCAC
GGACATCATGGACATCATGGACACCATGGCAAGGGCAAGCTAGCAAGCTT
TCTAGACC

BO13817.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:11:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG11413-PA 429 CG11413-RA 1..426 17..442 2130 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 08:45:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG11413-RA 602 CG11413-RA 9..435 16..442 2135 100 Plus
CG4622-RC 2762 CG4622-RC 372..798 442..16 2135 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 08:45:00
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 24536198..24536624 16..442 2135 100 Plus
Blast to na_te.dros performed on 2015-02-09 08:45:04 has no hits.

BO13817.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:12:58 Download gff for BO13817.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11413-PA 1..429 17..446 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:02:44 Download gff for BO13817.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11413-PA 1..429 17..446 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 18:12:53 Download gff for BO13817.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11413-RA 2..445 9..456 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 11:42:56 Download gff for BO13817.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4622-RC 362..805 9..456 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 11:42:56 Download gff for BO13817.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 24536191..24536634 9..456 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 18:12:53 Download gff for BO13817.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 20423714..20424157 9..456 98   Plus

BO13817.complete Sequence

460 bp assembled on 2006-10-11

GenBank Submission: FJ632935

> BO13817.complete
GAAGTTATCAGTCGACATGGATCTTCTCAAGAGGCACCTGCTGCTCCTGG
TCATCGGAGCTTGCCTGTGTGTCTGCGCCCAGGCCACGATCACCATCCAG
AAAACCAAGCCAGCGCTGCCGGATCCCAGCCAGTTGCTAGCCAAGCTACC
GCCAAAGCCGGACTTTCTCAAGGATCCCTCTAAATTACTAGCCAAAATCG
CGCAATCCAAACCAGCTCTCCCAGATCCCAGCCAGCTGCTCGCCAAACTG
CCGCCCAAGCCCGCTATCCTCAAGGATCCCAGCCAGCTGCTCTCCAAGTT
CGTGAAACCAAAGCCAGTGATCATAAAGCCGGTGATTGTGAAGCCGGTGG
TGGTGGTCAAGCCCGTGGCGGTTGGCGGAGGTGGCGGTGGTCACGGCCAC
GGACATCATGGACATCATGGACACCATGGCAAGGGCAAGCTAGCAAGCTT
TCTAGACCAT

BO13817.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:47:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG11413-RA 429 CG11413-PA 1..426 17..442 2130 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:47:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG11413-RA 602 CG11413-RA 9..435 16..442 2135 100 Plus
CG4622-RC 2762 CG4622-RC 372..798 442..16 2135 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:47:29
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 24536198..24536624 16..442 2135 100 Plus
Blast to na_te.dros performed on 2014-11-27 14:47:30 has no hits.

BO13817.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:44:39 Download gff for BO13817.complete
Subject Subject Range Query Range Percent Splice Strand
CG11413-RA 1..429 17..446 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:58:34 Download gff for BO13817.complete
Subject Subject Range Query Range Percent Splice Strand
CG4622-RB 298..741 9..456 98   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:51:54 Download gff for BO13817.complete
Subject Subject Range Query Range Percent Splice Strand
CG11413-RA 10..435 17..444 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:44:40 Download gff for BO13817.complete
Subject Subject Range Query Range Percent Splice Strand
CG4622-RB 298..741 9..456 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:18:44 Download gff for BO13817.complete
Subject Subject Range Query Range Percent Splice Strand
CG4622-RC 370..797 17..444 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:18:44 Download gff for BO13817.complete
Subject Subject Range Query Range Percent Splice Strand
2R 24536199..24536624 17..444 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:51:54 Download gff for BO13817.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 20423722..20424147 17..444 99   Plus

BO13817.pep Sequence

Translation from 16 to 460

> BO13817.pep
MDLLKRHLLLLVIGACLCVCAQATITIQKTKPALPDPSQLLAKLPPKPDF
LKDPSKLLAKIAQSKPALPDPSQLLAKLPPKPAILKDPSQLLSKFVKPKP
VIIKPVIVKPVVVVKPVAVGGGGGGHGHGHHGHHGHHGKGKLASFLDH

BO13817.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:34:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG11413-PA 142 CG11413-PA 1..142 1..142 749 100 Plus