Clone Sequence Records
BO13817.3prime Sequence
458 bp (457 high quality bases) assembled on 2006-05-08
> BO13817.3prime
ATGGTCTAGAAAGCTTGCTAGCTTGCCCTTGCCATGGTGTCCATGATGTC
CATGATGTCCGTGGCCGTGACCACCGCCACCTCCGCCAACCGCCACGGGC
TTGACCACCACCACCGGCTTCACAATCACCGGCTTTATGATCACTGGCTT
TGGTTTCACGAACTTGGAGAGCAGCTGGCTGGGATCCTTGAGGATAGCGG
GCTTGGGCGGCAGTTTGGCGAGCAGCTGGCTGGGATCTGGGAGAGCTGGT
TTGGATTGCGCGATTTTGGCTAGTAATTTAGAGGGATCCTTGAGAAAGTC
CGGCTTTGGCGGTAGCTTGGCTAGCAACTGGCTGGGATCCGGCAGCGCTG
GCTTGGTTTTCTGGATGGTGATCGTGGCCTGGGCGCAGACACACAGGCAA
GCTCCGATGACCAGGAGCAGCAGGTGCCTCTTGAGAAGATCCATGTCGAC
TGATAACT
BO13817.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:11:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11413-PA | 429 | CG11413-RA | 1..426 | 444..19 | 2130 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 21:37:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11413-RA | 602 | CG11413-RA | 9..435 | 445..19 | 2135 | 100 | Minus |
CG4622-RC | 2762 | CG4622-RC | 372..798 | 19..445 | 2135 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 21:37:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 24536198..24536624 | 445..19 | 2135 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 21:37:39 has no hits.
BO13817.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:12:57 Download gff for
BO13817.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11413-PA | 1..429 | 15..444 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:02:42 Download gff for
BO13817.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11413-PA | 1..429 | 15..444 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-27 20:26:58 Download gff for
BO13817.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11413-RA | 2..445 | 5..452 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:32:32 Download gff for
BO13817.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4622-RC | 362..805 | 5..452 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 00:32:32 Download gff for
BO13817.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 24536191..24536634 | 5..452 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-27 20:26:58 Download gff for
BO13817.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 20423714..20424157 | 5..452 | 98 | | Minus |
BO13817.5prime Sequence
458 bp (457 high quality bases) assembled on 2006-05-08
> BO13817.5prime
GAAGTTATCAGTCGACATGGATCTTCTCAAGAGGCACCTGCTGCTCCTGG
TCATCGGAGCTTGCCTGTGTGTCTGCGCCCAGGCCACGATCACCATCCAG
AAAACCAAGCCAGCGCTGCCGGATCCCAGCCAGTTGCTAGCCAAGCTACC
GCCAAAGCCGGACTTTCTCAAGGATCCCTCTAAATTACTAGCCAAAATCG
CGCAATCCAAACCAGCTCTCCCAGATCCCAGCCAGCTGCTCGCCAAACTG
CCGCCCAAGCCCGCTATCCTCAAGGATCCCAGCCAGCTGCTCTCCAAGTT
CGTGAAACCAAAGCCAGTGATCATAAAGCCGGTGATTGTGAAGCCGGTGG
TGGTGGTCAAGCCCGTGGCGGTTGGCGGAGGTGGCGGTGGTCACGGCCAC
GGACATCATGGACATCATGGACACCATGGCAAGGGCAAGCTAGCAAGCTT
TCTAGACC
BO13817.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:11:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11413-PA | 429 | CG11413-RA | 1..426 | 17..442 | 2130 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 08:45:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11413-RA | 602 | CG11413-RA | 9..435 | 16..442 | 2135 | 100 | Plus |
CG4622-RC | 2762 | CG4622-RC | 372..798 | 442..16 | 2135 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 08:45:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 24536198..24536624 | 16..442 | 2135 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-09 08:45:04 has no hits.
BO13817.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:12:58 Download gff for
BO13817.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11413-PA | 1..429 | 17..446 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:02:44 Download gff for
BO13817.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11413-PA | 1..429 | 17..446 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 18:12:53 Download gff for
BO13817.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11413-RA | 2..445 | 9..456 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 11:42:56 Download gff for
BO13817.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4622-RC | 362..805 | 9..456 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 11:42:56 Download gff for
BO13817.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 24536191..24536634 | 9..456 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 18:12:53 Download gff for
BO13817.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 20423714..20424157 | 9..456 | 98 | | Plus |
BO13817.complete Sequence
460 bp assembled on 2006-10-11
GenBank Submission: FJ632935
> BO13817.complete
GAAGTTATCAGTCGACATGGATCTTCTCAAGAGGCACCTGCTGCTCCTGG
TCATCGGAGCTTGCCTGTGTGTCTGCGCCCAGGCCACGATCACCATCCAG
AAAACCAAGCCAGCGCTGCCGGATCCCAGCCAGTTGCTAGCCAAGCTACC
GCCAAAGCCGGACTTTCTCAAGGATCCCTCTAAATTACTAGCCAAAATCG
CGCAATCCAAACCAGCTCTCCCAGATCCCAGCCAGCTGCTCGCCAAACTG
CCGCCCAAGCCCGCTATCCTCAAGGATCCCAGCCAGCTGCTCTCCAAGTT
CGTGAAACCAAAGCCAGTGATCATAAAGCCGGTGATTGTGAAGCCGGTGG
TGGTGGTCAAGCCCGTGGCGGTTGGCGGAGGTGGCGGTGGTCACGGCCAC
GGACATCATGGACATCATGGACACCATGGCAAGGGCAAGCTAGCAAGCTT
TCTAGACCAT
BO13817.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:47:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11413-RA | 429 | CG11413-PA | 1..426 | 17..442 | 2130 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:47:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11413-RA | 602 | CG11413-RA | 9..435 | 16..442 | 2135 | 100 | Plus |
CG4622-RC | 2762 | CG4622-RC | 372..798 | 442..16 | 2135 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:47:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 24536198..24536624 | 16..442 | 2135 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:47:30 has no hits.
BO13817.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:44:39 Download gff for
BO13817.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11413-RA | 1..429 | 17..446 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:58:34 Download gff for
BO13817.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4622-RB | 298..741 | 9..456 | 98 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:51:54 Download gff for
BO13817.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11413-RA | 10..435 | 17..444 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:44:40 Download gff for
BO13817.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4622-RB | 298..741 | 9..456 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:18:44 Download gff for
BO13817.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4622-RC | 370..797 | 17..444 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:18:44 Download gff for
BO13817.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 24536199..24536624 | 17..444 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:51:54 Download gff for
BO13817.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 20423722..20424147 | 17..444 | 99 | | Plus |
BO13817.pep Sequence
Translation from 16 to 460
> BO13817.pep
MDLLKRHLLLLVIGACLCVCAQATITIQKTKPALPDPSQLLAKLPPKPDF
LKDPSKLLAKIAQSKPALPDPSQLLAKLPPKPAILKDPSQLLSKFVKPKP
VIIKPVIVKPVVVVKPVAVGGGGGGHGHGHHGHHGHHGKGKLASFLDH
BO13817.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:34:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11413-PA | 142 | CG11413-PA | 1..142 | 1..142 | 749 | 100 | Plus |