Clone Sequence Records
BO13820.3prime Sequence
792 bp (719 high quality bases) assembled on 2006-05-08
> BO13820.3prime
ATGGTCTAGAAAGCTTGCCTTTGTTTTACTGGCCACCGCGGCCACCAGCG
CAGCTCCACGTCCGGATCCGTCCTCCGAGAGCATGATGTCCCACTCCTTG
TCTGCTTTCACCAGCTTTTGGAGTGTTTGCCTCATGTAGGCATCGAACTT
TGGATGGTATCGGTAGACGGAGCCATCCATGCCGACTATCACGCGGCGGT
TGGAAGTCCTGTTCACCAGCCCACTGACTCCGATGGCTACTAATGTAGCC
GCTCGCTTAGCTACGCACTCGCAGATGTATCTCAGAGTCTGGCAGTCCTC
CACGGAGGCCTTCTCTAGACCAAACAGATTTTTCACAATCTTCCTTGTGC
TGGCAAACTCTGGGAAGGAGTCGTCCTCGATTTCCGAAATGTAGCGCGTC
TCGAAAACCTCTTCGTTTCTCTGCAGCACGCTGGCGAATTCTGGACGTCG
ACTGCTCTGTTTAAAGATCAGCTTGCGCTCGAGGGCACGAAGTAGCACAA
GGCGCACCAGGTTGCCCAAGTACATGCCCGCCGTCATCTTTTCGAACAGC
TGCTCCGATCGGTTTAGAGACTTTTCGTCAACTTCGCGATCGTATTCGGT
GCGCACAAAGTCCAACTGACCACCCTCACCAAAGGCGCCCCACTCAGCAT
TTACAATCACACTCCGCTTCGTTTTTTTAAAGTCTGCGCGCAATAGGTCC
ACATTCTCAACATCTTCAACGTACCAGGCATTGCAGCCAGTTCCCACAAT
GACACCCACCCGGCAATCTGCATTACGATGGGCGCAGGACAT
BO13820.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:11:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8094-PA | 1365 | Hex-C-RA | 589..1362 | 792..19 | 3845 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:40:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Hex-C-RA | 1493 | CG8094-RA | 654..1427 | 792..19 | 3855 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:40:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 15218903..15219676 | 19..792 | 3855 | 99.9 | Plus |
Blast to na_te.dros performed 2015-02-10 15:40:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
GATE | 8507 | GATE DME010298 8507bp Derived from AJ010298 (e1315889) (Rel. 56, Last updated, Version 1). | 8009..8045 | 100..64 | 113 | 78.4 | Minus |
BO13820.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:13:01 Download gff for
BO13820.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hex-C-PA | 589..1365 | 18..792 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:02:48 Download gff for
BO13820.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8094-PA | 589..1365 | 18..792 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 23:16:39 Download gff for
BO13820.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hex-C-RA | 654..1427 | 19..792 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:25:16 Download gff for
BO13820.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hex-C-RA | 654..1427 | 19..792 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:25:16 Download gff for
BO13820.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 15218903..15219676 | 19..792 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 23:16:39 Download gff for
BO13820.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 11106408..11107181 | 19..792 | 99 | | Plus |
BO13820.5prime Sequence
810 bp (726 high quality bases) assembled on 2006-05-08
> BO13820.5prime
GAAGTTATCAGTCGACATGCTGGACGCGGAGGTGCGAGAACTTATGCAAC
CCTTTGTGTTGAGTGATTACCAGGTGCAGGAAGTGTACAGTCGCTTTTGC
CTGGAAGTGGCCCGTGGACTTAAGCGGTCCACGCATCCACAGGCCAACGT
CAAGTGTTTTCCCACGTACGTGCAGGATCTGCCCACGGGCGACGAGATGG
GCAAGTACCTGGCCCTGGATCTCGGCGGTACCAACTTCCGAGTACTGCTC
GTCTCGCTGAAAGGTCACCACGACGCCACGGTGGATTCTCAGATCTATGC
CGTGCCAAAGGACCTGATGGTGGGGCCCGGTGTGGACCTATTCGATCACA
TTGCGGGCTGCCTGGCCAAATTTGTGGAGAAACACGACATGAAGACCGCA
TATCTGCCACTGGGCTTCACTTTTTCCTTCCCTTGCGTGCAACTAGGCCT
TAAGGAGGGCATCCTGGTACGCTGGACTAAGGGATTCGATTGTGCTGGGG
TTGAGGGCGAGGATGTGGGCCGCATGCTGCACGAGGCCATTCAGCGGCGC
GGAGATGCCGACATTGCCGTGGTGGCTATACTCAACGATACCACTGGCAC
CTTGATGTCCTGCGCCCATCGTAATGCAGATTGCCGGGTGGGTGTCATTG
TGGGAACTGGCTGCAATGCCTGCTACGTTGAAGATGTTGAGAATGTGGAC
CTATTGCGCGCAGACTTTAAAAAAACGAAGCGGAGTGTGATTGTAAATGC
TGAGTGGGGCGCCTTTGGTGAGGGTGGTCAGTTGGACTTTGTGCGCACCG
AATACGATCG
BO13820.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:11:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8094-PA | 1365 | Hex-C-RA | 1..794 | 17..810 | 3970 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:33:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Hex-C-RA | 1493 | CG8094-RA | 66..859 | 17..810 | 3970 | 100 | Plus |
Hex-A-RC | 4139 | CG3001-RC | 929..1045 | 134..250 | 210 | 78.6 | Plus |
Hex-A-RB | 2512 | CG3001-RB | 714..830 | 134..250 | 210 | 78.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:33:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 15219471..15220264 | 810..17 | 3970 | 100 | Minus |
X | 23542271 | X | 9586603..9586719 | 134..250 | 210 | 78.6 | Plus |
Blast to na_te.dros performed on 2015-02-10 20:33:28 has no hits.
BO13820.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:13:02 Download gff for
BO13820.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hex-C-PA | 1..794 | 17..810 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:02:49 Download gff for
BO13820.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8094-PA | 1..794 | 17..810 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:41:01 Download gff for
BO13820.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hex-C-RA | 60..859 | 10..810 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:50:46 Download gff for
BO13820.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hex-C-RA | 60..859 | 10..810 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 22:50:46 Download gff for
BO13820.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 15219471..15220270 | 10..810 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:41:01 Download gff for
BO13820.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 11106976..11107775 | 10..810 | 99 | | Minus |
BO13820.complete Sequence
1396 bp assembled on 2006-10-11
GenBank Submission: FJ632936
> BO13820.complete
GAAGTTATCAGTCGACATGCTGGACGCGGAGGTGCGAGAACTTATGCAAC
CCTTTGTGTTGAGTGATTACCAGGTGCAGGAAGTGTACAGTCGCTTTTGC
CTGGAAGTGGCCCGTGGACTTAAGCGGTCCACGCATCCACAGGCCAACGT
CAAGTGTTTTCCCACGTACGTGCAGGATCTGCCCACGGGCGACGAGATGG
GCAAGTACCTGGCCCTGGATCTCGGCGGTACCAACTTCCGAGTACTGCTC
GTCTCGCTGAAAGGTCACCACGACGCCACGGTGGATTCTCAGATCTATGC
CGTGCCAAAGGACCTGATGGTGGGGCCCGGTGTGGACCTATTCGATCACA
TTGCGGGCTGCCTGGCCAAATTTGTGGAGAAACACGACATGAAGACCGCA
TATCTGCCACTGGGCTTCACTTTTTCCTTCCCTTGCGTGCAACTAGGCCT
TAAGGAGGGCATCCTGGTACGCTGGACTAAGGGATTCGATTGTGCTGGGG
TTGAGGGCGAGGATGTGGGCCGCATGCTGCACGAGGCCATTCAGCGGCGC
GGAGATGCCGACATTGCCGTGGTGGCTATACTCAACGATACCACTGGCAC
CTTGATGTCCTGCGCCCATCGTAATGCAGATTGCCGGGTGGGTGTCATTG
TGGGAACTGGCTGCAATGCCTGCTACGTTGAAGATGTTGAGAATGTGGAC
CTATTGCGCGCAGACTTTAAAAAAACGAAGCGGAGTGTGATTGTAAATGC
TGAGTGGGGCGCCTTTGGTGAGGGTGGTCAGTTGGACTTTGTGCGCACCG
AATACGATCGCGAAGTTGACGAAAAGTCTCTAAACCGATCGGAGCAGCTG
TTCGAAAAGATGACGGCGGGCATGTACTTGGGCAACCTGGTGCGCCTTGT
GCTACTTCGTGCCCTCGAGCGCAAGCTGATCTTTAAACAGAGCAGTCGAC
GTCCAGAATTCGCCAGCGTGCTGCAGAGAAACGAAGAGGTTTTCGAGACG
CGCTACATTTCGGAAATCGAGGACGACTCCTTCCCAGAGTTTGCCAGCAC
AAGGAAGATTGTGAAAAATCTGTTTGGTCTAGAGAAGGCCTCCGTGGAGG
ACTGCCAGACTCTGAGATACATCTGCGAGTGCGTAGCTAAGCGAGCGGCT
ACATTAGTAGCCATCGGAGTCAGTGGGCTGGTGAACAGGACTTCCAACCG
CCGCGTGATAGTCGGCATGGATGGCTCCGTCTACCGATACCATCCAAAGT
TCGATGCCTACATGAGGCAAACACTCCAAAAGCTGGTGAAAGCAGACAAG
GAGTGGGACATCATGCTCTCGGAGGACGGATCCGGACGTGGAGCTGCGCT
GGTGGCCGCGGTGGCCAGTAAAACAAAGGCAAGCTTTCTAGACCAT
BO13820.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 14:50:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Hex-C-RA | 1365 | CG8094-PA | 1..1362 | 17..1378 | 6810 | 100 | Plus |
Hex-A-RC | 1347 | CG3001-PC | 106..222 | 134..250 | 210 | 78.6 | Plus |
Hex-A-RB | 1347 | CG3001-PB | 106..222 | 134..250 | 210 | 78.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:50:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Hex-C-RA | 1493 | CG8094-RA | 66..1427 | 17..1378 | 6810 | 100 | Plus |
Hex-A-RC | 4139 | CG3001-RC | 929..1045 | 134..250 | 210 | 78.6 | Plus |
Hex-A-RB | 2512 | CG3001-RB | 714..830 | 134..250 | 210 | 78.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:50:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 15218903..15220264 | 1378..17 | 6810 | 100 | Minus |
X | 23542271 | X | 9586603..9586719 | 134..250 | 210 | 78.6 | Plus |
Blast to na_te.dros performed 2014-11-26 14:50:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
GATE | 8507 | GATE DME010298 8507bp Derived from AJ010298 (e1315889) (Rel. 56, Last updated, Version 1). | 8009..8045 | 1297..1333 | 113 | 78.4 | Plus |
BO13820.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:44:41 Download gff for
BO13820.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hex-C-RA | 1..1365 | 17..1379 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:58:36 Download gff for
BO13820.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hex-C-RA | 143..1510 | 10..1378 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:43:51 Download gff for
BO13820.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hex-C-RA | 66..1427 | 17..1380 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:44:41 Download gff for
BO13820.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hex-C-RA | 143..1510 | 10..1378 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:01:16 Download gff for
BO13820.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hex-C-RA | 66..1427 | 17..1380 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:01:16 Download gff for
BO13820.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 15218901..15220264 | 17..1380 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:43:51 Download gff for
BO13820.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 11106406..11107769 | 17..1380 | 99 | | Minus |
BO13820.pep Sequence
Translation from 16 to 1396
> BO13820.pep
MLDAEVRELMQPFVLSDYQVQEVYSRFCLEVARGLKRSTHPQANVKCFPT
YVQDLPTGDEMGKYLALDLGGTNFRVLLVSLKGHHDATVDSQIYAVPKDL
MVGPGVDLFDHIAGCLAKFVEKHDMKTAYLPLGFTFSFPCVQLGLKEGIL
VRWTKGFDCAGVEGEDVGRMLHEAIQRRGDADIAVVAILNDTTGTLMSCA
HRNADCRVGVIVGTGCNACYVEDVENVDLLRADFKKTKRSVIVNAEWGAF
GEGGQLDFVRTEYDREVDEKSLNRSEQLFEKMTAGMYLGNLVRLVLLRAL
ERKLIFKQSSRRPEFASVLQRNEEVFETRYISEIEDDSFPEFASTRKIVK
NLFGLEKASVEDCQTLRYICECVAKRAATLVAIGVSGLVNRTSNRRVIVG
MDGSVYRYHPKFDAYMRQTLQKLVKADKEWDIMLSEDGSGRGAALVAAVA
SKTKASFLDH
BO13820.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:34:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Hex-C-PA | 454 | CG8094-PA | 1..454 | 1..454 | 2344 | 100 | Plus |
Hex-A-PC | 448 | CG3001-PC | 2..440 | 6..452 | 1243 | 54.4 | Plus |
Hex-A-PB | 448 | CG3001-PB | 2..440 | 6..452 | 1243 | 54.4 | Plus |
Hex-A-PA | 541 | CG3001-PA | 95..533 | 6..452 | 1243 | 54.4 | Plus |
Hex-t2-PA | 486 | CG32849-PA | 37..484 | 1..455 | 1047 | 46.4 | Plus |