Clone BO13820 Report

Search the DGRC for BO13820

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:138
Well:20
Vector:pDNR-Dual
Associated Gene/TranscriptHex-C-RA
Protein status:BO13820.pep: validated full length
Sequenced Size:1396

Clone Sequence Records

BO13820.3prime Sequence

792 bp (719 high quality bases) assembled on 2006-05-08

> BO13820.3prime
ATGGTCTAGAAAGCTTGCCTTTGTTTTACTGGCCACCGCGGCCACCAGCG
CAGCTCCACGTCCGGATCCGTCCTCCGAGAGCATGATGTCCCACTCCTTG
TCTGCTTTCACCAGCTTTTGGAGTGTTTGCCTCATGTAGGCATCGAACTT
TGGATGGTATCGGTAGACGGAGCCATCCATGCCGACTATCACGCGGCGGT
TGGAAGTCCTGTTCACCAGCCCACTGACTCCGATGGCTACTAATGTAGCC
GCTCGCTTAGCTACGCACTCGCAGATGTATCTCAGAGTCTGGCAGTCCTC
CACGGAGGCCTTCTCTAGACCAAACAGATTTTTCACAATCTTCCTTGTGC
TGGCAAACTCTGGGAAGGAGTCGTCCTCGATTTCCGAAATGTAGCGCGTC
TCGAAAACCTCTTCGTTTCTCTGCAGCACGCTGGCGAATTCTGGACGTCG
ACTGCTCTGTTTAAAGATCAGCTTGCGCTCGAGGGCACGAAGTAGCACAA
GGCGCACCAGGTTGCCCAAGTACATGCCCGCCGTCATCTTTTCGAACAGC
TGCTCCGATCGGTTTAGAGACTTTTCGTCAACTTCGCGATCGTATTCGGT
GCGCACAAAGTCCAACTGACCACCCTCACCAAAGGCGCCCCACTCAGCAT
TTACAATCACACTCCGCTTCGTTTTTTTAAAGTCTGCGCGCAATAGGTCC
ACATTCTCAACATCTTCAACGTACCAGGCATTGCAGCCAGTTCCCACAAT
GACACCCACCCGGCAATCTGCATTACGATGGGCGCAGGACAT

BO13820.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:11:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG8094-PA 1365 Hex-C-RA 589..1362 792..19 3845 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:40:38
Subject Length Description Subject Range Query Range Score Percent Strand
Hex-C-RA 1493 CG8094-RA 654..1427 792..19 3855 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:40:31
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 15218903..15219676 19..792 3855 99.9 Plus
Blast to na_te.dros performed 2015-02-10 15:40:35
Subject Length Description Subject Range Query Range Score Percent Strand
GATE 8507 GATE DME010298 8507bp Derived from AJ010298 (e1315889) (Rel. 56, Last updated, Version 1). 8009..8045 100..64 113 78.4 Minus

BO13820.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:13:01 Download gff for BO13820.3prime
Subject Subject Range Query Range Percent Splice Strand
Hex-C-PA 589..1365 18..792 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:02:48 Download gff for BO13820.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8094-PA 589..1365 18..792 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 23:16:39 Download gff for BO13820.3prime
Subject Subject Range Query Range Percent Splice Strand
Hex-C-RA 654..1427 19..792 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:25:16 Download gff for BO13820.3prime
Subject Subject Range Query Range Percent Splice Strand
Hex-C-RA 654..1427 19..792 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:25:16 Download gff for BO13820.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 15218903..15219676 19..792 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 23:16:39 Download gff for BO13820.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 11106408..11107181 19..792 99   Plus

BO13820.5prime Sequence

810 bp (726 high quality bases) assembled on 2006-05-08

> BO13820.5prime
GAAGTTATCAGTCGACATGCTGGACGCGGAGGTGCGAGAACTTATGCAAC
CCTTTGTGTTGAGTGATTACCAGGTGCAGGAAGTGTACAGTCGCTTTTGC
CTGGAAGTGGCCCGTGGACTTAAGCGGTCCACGCATCCACAGGCCAACGT
CAAGTGTTTTCCCACGTACGTGCAGGATCTGCCCACGGGCGACGAGATGG
GCAAGTACCTGGCCCTGGATCTCGGCGGTACCAACTTCCGAGTACTGCTC
GTCTCGCTGAAAGGTCACCACGACGCCACGGTGGATTCTCAGATCTATGC
CGTGCCAAAGGACCTGATGGTGGGGCCCGGTGTGGACCTATTCGATCACA
TTGCGGGCTGCCTGGCCAAATTTGTGGAGAAACACGACATGAAGACCGCA
TATCTGCCACTGGGCTTCACTTTTTCCTTCCCTTGCGTGCAACTAGGCCT
TAAGGAGGGCATCCTGGTACGCTGGACTAAGGGATTCGATTGTGCTGGGG
TTGAGGGCGAGGATGTGGGCCGCATGCTGCACGAGGCCATTCAGCGGCGC
GGAGATGCCGACATTGCCGTGGTGGCTATACTCAACGATACCACTGGCAC
CTTGATGTCCTGCGCCCATCGTAATGCAGATTGCCGGGTGGGTGTCATTG
TGGGAACTGGCTGCAATGCCTGCTACGTTGAAGATGTTGAGAATGTGGAC
CTATTGCGCGCAGACTTTAAAAAAACGAAGCGGAGTGTGATTGTAAATGC
TGAGTGGGGCGCCTTTGGTGAGGGTGGTCAGTTGGACTTTGTGCGCACCG
AATACGATCG

BO13820.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:11:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG8094-PA 1365 Hex-C-RA 1..794 17..810 3970 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:33:30
Subject Length Description Subject Range Query Range Score Percent Strand
Hex-C-RA 1493 CG8094-RA 66..859 17..810 3970 100 Plus
Hex-A-RC 4139 CG3001-RC 929..1045 134..250 210 78.6 Plus
Hex-A-RB 2512 CG3001-RB 714..830 134..250 210 78.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:33:27
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 15219471..15220264 810..17 3970 100 Minus
X 23542271 X 9586603..9586719 134..250 210 78.6 Plus
Blast to na_te.dros performed on 2015-02-10 20:33:28 has no hits.

BO13820.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:13:02 Download gff for BO13820.5prime
Subject Subject Range Query Range Percent Splice Strand
Hex-C-PA 1..794 17..810 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:02:49 Download gff for BO13820.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8094-PA 1..794 17..810 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:41:01 Download gff for BO13820.5prime
Subject Subject Range Query Range Percent Splice Strand
Hex-C-RA 60..859 10..810 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:50:46 Download gff for BO13820.5prime
Subject Subject Range Query Range Percent Splice Strand
Hex-C-RA 60..859 10..810 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 22:50:46 Download gff for BO13820.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 15219471..15220270 10..810 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:41:01 Download gff for BO13820.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 11106976..11107775 10..810 99   Minus

BO13820.complete Sequence

1396 bp assembled on 2006-10-11

GenBank Submission: FJ632936

> BO13820.complete
GAAGTTATCAGTCGACATGCTGGACGCGGAGGTGCGAGAACTTATGCAAC
CCTTTGTGTTGAGTGATTACCAGGTGCAGGAAGTGTACAGTCGCTTTTGC
CTGGAAGTGGCCCGTGGACTTAAGCGGTCCACGCATCCACAGGCCAACGT
CAAGTGTTTTCCCACGTACGTGCAGGATCTGCCCACGGGCGACGAGATGG
GCAAGTACCTGGCCCTGGATCTCGGCGGTACCAACTTCCGAGTACTGCTC
GTCTCGCTGAAAGGTCACCACGACGCCACGGTGGATTCTCAGATCTATGC
CGTGCCAAAGGACCTGATGGTGGGGCCCGGTGTGGACCTATTCGATCACA
TTGCGGGCTGCCTGGCCAAATTTGTGGAGAAACACGACATGAAGACCGCA
TATCTGCCACTGGGCTTCACTTTTTCCTTCCCTTGCGTGCAACTAGGCCT
TAAGGAGGGCATCCTGGTACGCTGGACTAAGGGATTCGATTGTGCTGGGG
TTGAGGGCGAGGATGTGGGCCGCATGCTGCACGAGGCCATTCAGCGGCGC
GGAGATGCCGACATTGCCGTGGTGGCTATACTCAACGATACCACTGGCAC
CTTGATGTCCTGCGCCCATCGTAATGCAGATTGCCGGGTGGGTGTCATTG
TGGGAACTGGCTGCAATGCCTGCTACGTTGAAGATGTTGAGAATGTGGAC
CTATTGCGCGCAGACTTTAAAAAAACGAAGCGGAGTGTGATTGTAAATGC
TGAGTGGGGCGCCTTTGGTGAGGGTGGTCAGTTGGACTTTGTGCGCACCG
AATACGATCGCGAAGTTGACGAAAAGTCTCTAAACCGATCGGAGCAGCTG
TTCGAAAAGATGACGGCGGGCATGTACTTGGGCAACCTGGTGCGCCTTGT
GCTACTTCGTGCCCTCGAGCGCAAGCTGATCTTTAAACAGAGCAGTCGAC
GTCCAGAATTCGCCAGCGTGCTGCAGAGAAACGAAGAGGTTTTCGAGACG
CGCTACATTTCGGAAATCGAGGACGACTCCTTCCCAGAGTTTGCCAGCAC
AAGGAAGATTGTGAAAAATCTGTTTGGTCTAGAGAAGGCCTCCGTGGAGG
ACTGCCAGACTCTGAGATACATCTGCGAGTGCGTAGCTAAGCGAGCGGCT
ACATTAGTAGCCATCGGAGTCAGTGGGCTGGTGAACAGGACTTCCAACCG
CCGCGTGATAGTCGGCATGGATGGCTCCGTCTACCGATACCATCCAAAGT
TCGATGCCTACATGAGGCAAACACTCCAAAAGCTGGTGAAAGCAGACAAG
GAGTGGGACATCATGCTCTCGGAGGACGGATCCGGACGTGGAGCTGCGCT
GGTGGCCGCGGTGGCCAGTAAAACAAAGGCAAGCTTTCTAGACCAT

BO13820.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 14:50:34
Subject Length Description Subject Range Query Range Score Percent Strand
Hex-C-RA 1365 CG8094-PA 1..1362 17..1378 6810 100 Plus
Hex-A-RC 1347 CG3001-PC 106..222 134..250 210 78.6 Plus
Hex-A-RB 1347 CG3001-PB 106..222 134..250 210 78.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:50:36
Subject Length Description Subject Range Query Range Score Percent Strand
Hex-C-RA 1493 CG8094-RA 66..1427 17..1378 6810 100 Plus
Hex-A-RC 4139 CG3001-RC 929..1045 134..250 210 78.6 Plus
Hex-A-RB 2512 CG3001-RB 714..830 134..250 210 78.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:50:32
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 15218903..15220264 1378..17 6810 100 Minus
X 23542271 X 9586603..9586719 134..250 210 78.6 Plus
Blast to na_te.dros performed 2014-11-26 14:50:33
Subject Length Description Subject Range Query Range Score Percent Strand
GATE 8507 GATE DME010298 8507bp Derived from AJ010298 (e1315889) (Rel. 56, Last updated, Version 1). 8009..8045 1297..1333 113 78.4 Plus

BO13820.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:44:41 Download gff for BO13820.complete
Subject Subject Range Query Range Percent Splice Strand
Hex-C-RA 1..1365 17..1379 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:58:36 Download gff for BO13820.complete
Subject Subject Range Query Range Percent Splice Strand
Hex-C-RA 143..1510 10..1378 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:43:51 Download gff for BO13820.complete
Subject Subject Range Query Range Percent Splice Strand
Hex-C-RA 66..1427 17..1380 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:44:41 Download gff for BO13820.complete
Subject Subject Range Query Range Percent Splice Strand
Hex-C-RA 143..1510 10..1378 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:01:16 Download gff for BO13820.complete
Subject Subject Range Query Range Percent Splice Strand
Hex-C-RA 66..1427 17..1380 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:01:16 Download gff for BO13820.complete
Subject Subject Range Query Range Percent Splice Strand
2R 15218901..15220264 17..1380 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:43:51 Download gff for BO13820.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 11106406..11107769 17..1380 99   Minus

BO13820.pep Sequence

Translation from 16 to 1396

> BO13820.pep
MLDAEVRELMQPFVLSDYQVQEVYSRFCLEVARGLKRSTHPQANVKCFPT
YVQDLPTGDEMGKYLALDLGGTNFRVLLVSLKGHHDATVDSQIYAVPKDL
MVGPGVDLFDHIAGCLAKFVEKHDMKTAYLPLGFTFSFPCVQLGLKEGIL
VRWTKGFDCAGVEGEDVGRMLHEAIQRRGDADIAVVAILNDTTGTLMSCA
HRNADCRVGVIVGTGCNACYVEDVENVDLLRADFKKTKRSVIVNAEWGAF
GEGGQLDFVRTEYDREVDEKSLNRSEQLFEKMTAGMYLGNLVRLVLLRAL
ERKLIFKQSSRRPEFASVLQRNEEVFETRYISEIEDDSFPEFASTRKIVK
NLFGLEKASVEDCQTLRYICECVAKRAATLVAIGVSGLVNRTSNRRVIVG
MDGSVYRYHPKFDAYMRQTLQKLVKADKEWDIMLSEDGSGRGAALVAAVA
SKTKASFLDH

BO13820.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:34:40
Subject Length Description Subject Range Query Range Score Percent Strand
Hex-C-PA 454 CG8094-PA 1..454 1..454 2344 100 Plus
Hex-A-PC 448 CG3001-PC 2..440 6..452 1243 54.4 Plus
Hex-A-PB 448 CG3001-PB 2..440 6..452 1243 54.4 Plus
Hex-A-PA 541 CG3001-PA 95..533 6..452 1243 54.4 Plus
Hex-t2-PA 486 CG32849-PA 37..484 1..455 1047 46.4 Plus