Clone BO13822 Report

Search the DGRC for BO13822

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:138
Well:22
Vector:pDNR-Dual
Associated Gene/TranscriptCG3999-RA
Protein status:BO13822.pep: Imported from assembly
Sequenced Size:2989

Clone Sequence Records

BO13822.3prime Sequence

800 bp (747 high quality bases) assembled on 2006-05-08

> BO13822.3prime
ATGGTCTAGAAAGCTTGCTAAATCAGGCAGTATTGGCGGACAGGTACACA
CAAGGTGCTTGTCACCATAGGCATCATCGATCCTGCCCACAGTGGGCCAG
ATCTTGGCATCTGGTTTTACAAAGATGGCGGGGAAGGCAGCCTGCTCCCG
TGTATATGGTCGATCCCACTTATCCGAGATCACCTGAGCTTGGGTGTGAG
GAGACATCTTCAGTGGATTGACTGCCTTGTCCATGCGACCCGCCTCGATC
TCGGCAATCTCCTCTCGAATGGAAATCATGGCATCACAGAACCTATCCAA
CTCCTCCTTATCCTCCGATTCAGTGGGCTCGATCATCAGGGTTCCAGCGA
CGGGCCAAGACATAGTTGGTGCATGGAAGCCGTAATCCATGAGTCGCTTG
GCCACATCCACTGCCTCGATATTGGCCGATTTCTTCAGGTCGCGTATATC
CAAAATGAACTCATGCGCAACCAGCTGAGAGTTGGGTGCCTTGTAGAGAG
TCTTGTAATGCTGCTCCAGCCTCTTGGACATGTAGTTTGCATTGAGAATG
GCCACCTGGGTAGCTCTCTTCAAACCCCTGCTGCCCATGAGTTTAATGTA
CGACCAGGATATGGGCAAAATGGCAGAGCTTCCGAAGGGAGCGGCGGATA
CGACTCCAAAACTGTGCTCCTCGCTGCTCAACGGACTGACAACAGGATGA
CCAGGAAGGTATGGTGCCAAATGGGCTTTCACGCCGATGGGACCCATTCC
AGGACCACCACCACCATGCGGAATGCAGAAGGTCTTGTGCAGGTTGAGAT

BO13822.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:11:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG3999-PA 2958 CG3999-RA 2174..2955 800..19 3910 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 12:29:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG3999-RB 3074 CG3999-RB 2236..3017 800..19 3910 100 Minus
CG3999-RA 3197 CG3999-RA 2236..3017 800..19 3910 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 12:29:13
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 10254246..10254919 800..127 3370 100 Minus
3R 32079331 3R 10254981..10255088 126..19 540 100 Minus
Blast to na_te.dros performed on 2015-02-08 12:29:16 has no hits.

BO13822.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:13:05 Download gff for BO13822.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3999-PA 2174..2958 15..800 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:02:54 Download gff for BO13822.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3999-PA 2174..2958 15..800 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:37:46 Download gff for BO13822.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3999-RA 2236..3021 14..800 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 15:21:42 Download gff for BO13822.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3999-RA 2236..3021 14..800 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 15:21:42 Download gff for BO13822.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 10254981..10255092 14..126 98   Minus
3R 10254246..10254919 127..800 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:37:46 Download gff for BO13822.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 6080703..6080814 14..126 98   Minus
arm_3R 6079968..6080641 127..800 100 -> Minus

BO13822.5prime Sequence

889 bp (764 high quality bases) assembled on 2006-05-08

> BO13822.5prime
GAAGTTATCAGTCGACATGCAGCGATTTTTGGGAAGGAGCAGCCAAAGCC
TTTTGCTAAGATGTGGTCATCGCTATCTGGCCACCACTCCTGTGGAGGAG
GTCATATTTCCCACCAAATCGGATTTTCCCAGTCGTCATATTGGGCCTCG
AAAGACGGATGTGGTGGCCATGTTGGATACTTTGGGCTTCAAGTCCCTGG
CGGAGCTCACAGAGAAAGCTGTGCCCCAGAGCATTCAACTGAAGAGGGAA
CTCGACCTGGACAAACCTCTGAATGAGCACGAGCTAATCCGCCGAATTCG
CGACATCTCGCTAAAGAATCAACTGTGGCGCTCCTACATCGGAATGGGTT
ACCACAACTGCCATGTGCCGCACACCATTATCCGGAATATGTTCGAGAAT
CCGGGTTGGACCACTCAGTACACCCCGTACCAGCCGGAAATCGCCCAGGG
ACGCTTGGAGTCGCTGCTGAACTATCAGACCCTGGTAACCGATCTCACCG
GCTTGGATGTGGCCAATGCCTCGCTATTGGACGAGGGAACCGCTGCTGCC
GAGGCCATGTGCCTGGCCACCAGGCACAACAAGCGCAAAAAGCTCTACCT
GTCGAACAGGGTGCATCCGCAGACGCTGTCCGTAGTCAAGACGCGAACGG
AAGCCTTGGAGCTGGAAATCGTGGTGGGACCTATTGAACAGGCGGATCTG
CCAAGCCGCGAATTGGCTGGCATTCTTCTCCAGTATCCAGATACTTATGG
TGATGTCAAGGACTTCGAGGATATCGCAGCTTTGGCAAAAAAAATGGGAC
CCTCGTGGTGGTGGCGACCGATTTGTTGTCGTTAACCCTTCTGCGTCCTC
CGGCGGAATTTGGAGCTGATATTGCAGTGGGGACCTCCC

BO13822.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:11:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG3999-PA 2958 CG3999-RA 1..773 17..789 3840 99.8 Plus
CG3999-PA 2958 CG3999-RA 775..874 790..889 475 99 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:16:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG3999-RB 3074 CG3999-RB 62..936 16..889 4320 99.7 Plus
CG3999-RA 3197 CG3999-RA 62..936 16..889 4320 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:16:24
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 10252171..10252692 273..794 2580 99.6 Plus
3R 32079331 3R 10251579..10251756 16..193 890 100 Plus
3R 32079331 3R 10252797..10252888 798..889 445 98.9 Plus
3R 32079331 3R 10251887..10251967 192..272 405 100 Plus
Blast to na_te.dros performed on 2015-02-12 06:16:28 has no hits.

BO13822.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:13:07 Download gff for BO13822.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3999-PA 1..874 17..889 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:02:55 Download gff for BO13822.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3999-PA 1..874 17..889 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:02:02 Download gff for BO13822.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3999-RA 62..936 16..889 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:00:27 Download gff for BO13822.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3999-RA 62..936 16..889 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:00:27 Download gff for BO13822.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 10251579..10251756 16..193 100 -> Plus
3R 10251889..10251967 194..272 100 -> Plus
3R 10252171..10252697 273..798 99 -> Plus
3R 10252798..10252888 799..889 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:02:02 Download gff for BO13822.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 6077301..6077478 16..193 100 -> Plus
arm_3R 6077611..6077689 194..272 100 -> Plus
arm_3R 6077893..6078419 273..798 99 -> Plus
arm_3R 6078520..6078610 799..889 98   Plus

BO13822.complete Sequence

2989 bp assembled on 2008-08-14

GenBank Submission: FJ632938

> BO13822.complete
GAAGTTATCAGTCGACATGCAGCGATTTTTGGGAAGGAGCAGCCAAAGCC
TTTTGCTAAGATGTGGTCATCGCTATCTGGCCACCACTCCTGTGGAGGAG
GTCATATTTCCCACCAAATCGGATTTTCCCAGTCGTCATATTGGGCCTCG
AAAGACGGATGTGGTGGCCATGTTGGATACTTTGGGCTTCAAGTCCCTGG
CGGAGCTCACAGAGAAAGCTGTGCCCCAGAGCATTCAACTGAAGAGGGAA
CTCGACCTGGACAAACCTCTGAATGAGCACGAGCTAATCCGCCGAATTCG
CGACATCTCGCTAAAGAATCAACTGTGGCGCTCCTACATCGGAATGGGTT
ACCACAACTGCCATGTGCCGCACACCATTATCCGGAATATGTTCGAGAAT
CCGGGTTGGACCACTCAGTACACCCCGTACCAGCCGGAAATCGCCCAGGG
ACGCTTGGAGTCGCTGCTGAACTATCAGACCCTGGTAACCGATCTCACCG
GCTTGGATGTGGCCAATGCCTCGCTATTGGACGAGGGAACCGCTGCTGCC
GAGGCCATGTGCCTGGCCACCAGGCACAACAAGCGCAAAAAGCTCTACCT
GTCGAACAGGGTGCATCCGCAGACGCTGTCCGTAGTCAAGACGCGAACGG
AAGCCTTGGAGCTGGAAATCGTGGTGGGACCTATTGAACAGGCGGATCTG
CCAAGCCGCGAATTGGCTGGCATTCTTCTCCAGTATCCAGATACTTATGG
TGATGTCAAGGACTTCGAGGATATCGCAGCTTTGGCAAAGAAAAATGGGA
CCCTCGTGGTGGTGGCGACCGATTTGTTGTCGTTAACCCTTCTGCGTCCT
CCGGCGGAATTTGGAGCTGATATTGCAGTGGGAACCTCCCAGCGATTGGG
AGTTCCTCTGGGATACGGTGGCCCCCATGCCGGATTTTTTGCCTGCAAGC
AGAGCTTGGTGCGGCTAATGCCGGGAAGGATGATTGGCGTGACCAGGGAT
ATGGACGGAAACGATGCCTATCGTCTGGCCCTGCAAACCAGGGAGCAGCA
TATCCGGCGGGATAAGGCAACAAGTAACATTTGCACGGCACAGGCTCTTC
TGGCCAACATGTCGGCCATGTACGCCATCTACCACGGTCCGGAGGGTCTG
AAAGCCATGGCCAATCGCATCCACCATTTCACGTTGACCCTTCAAACGGG
TGTCCTGGGAGCGGGTCACGAAGTGATCAACAAGAACTTCTTCGACACAC
TTCACATTAGACTGGGTGGAGGTCAATCCCTTGAGGATCTCAAAGAGCGT
GCCGAGCACAAGCGCATTAATCTCCGATATCTTGAAGATGACACTGTTGG
CGTGGCCCTTGATGAAACGGTCAGTGTAGCCGATGTGGACGATCTGTTGT
GGGTCTTCAAGGCAGAGGCATCTGTGGAACACATTCTGGCGCGTAAAGAT
GTCCTTAAGAACTCGATTGAGAACTCCAAGTTCCTGCGCACTTCGCCCTA
TCTGCAGCACCCTATTTTCCAGAGCTATCACAGCGAGTCCCGCATGGTGC
GCTACATGAAAAAGCTGGAGAATAAGGACATCTCCCTGGTGCACTCCATG
ATCCCCCTGGGATCCTGCACTATGAAGCTGAACTCCACCACCGAGATGAT
GCCTTGTTCCTTCCGCCACTTCACCGATATCCATCCTTTTGCGCCGGTGG
AACAAGCCCAGGGATTCCATCAGATGTTCAAGGAACTGGAGCATGACCTA
TGCGAGATTACAGGATACGATCGTATCTCCTTCCAGCCGAACTCGGGGGC
CCAAGGAGAATATGCAGGACTGAGAGCCATCAGGAGCTACCATGAACACC
GAAATGAAGGACACAGAAATATTTGTCTGATTCCAATTTCTGCCCACGGC
ACAAATCCAGCTTCTGCACAAATGGCGGGTATGAAGGTGGAGCCTATTAG
AATTTTGTCGAATGGTTCCATCGACATGGCACACCTAAGAGCTAAGGCAG
AGGAGCACGCCCACGAGTTGTCCTGCCTAATGATTACCTATCCATCGACA
ATGGGCGTGTTCGAGGAAACGGTTGCCGATATTTGCACCCTGATCCACAA
GCATGGCGGACAGGTGTACCTGGATGGAGCCAACATGAATGCCCAGGTTG
GGCTGTGTCGACCTGGAGATTATGGCAGCGATGTTTCGCATCTCAACCTG
CACAAGACCTTCTGCATTCCGCATGGTGGTGGTGGTCCTGGAATGGGTCC
CATCGGCGTGAAAGCCCATTTGGCACCATACCTTCCTGGTCATCCTGTTG
TCAGTCCGTTGAGCAGCGAGGAGCACAGTTTTGGAGTCGTATCCGCCGCT
CCCTTCGGAAGCTCTGCCATTTTGCCCATATCCTGGTCGTACATTAAACT
CATGGGCAGCAGGGGTTTGAAGAGAGCTACCCAGGTGGCCATTCTCAATG
CAAACTACATGTCCAAGAGGCTGGAGCAGCATTACAAGACTCTCTACAAG
GCACCCAACTCTCAGCTGGTTGCGCATGAGTTCATTTTGGATATACGCGA
CCTGAAGAAATCGGCCAATATCGAGGCAGTGGATGTGGCCAAGCGACTCA
TGGATTACGGCTTCCATGCACCAACTATGTCTTGGCCCGTCGCTGGAACC
CTGATGATCGAGCCCACTGAATCGGAGGATAAGGAGGAGTTGGATAGGTT
CTGTGATGCCATGATTTCCATTCGAGAGGAGATTGCCGAGATCGAGGCGG
GTCGCATGGACAAGGCAGTCAATCCACTGAAGATGTCTCCTCACACCCAA
GCTCAGGTGATCTCGGATAAGTGGGATCGACCATATACACGGGAGCAGGC
TGCCTTCCCCGCCATCTTTGTAAAACCAGATGCCAAGATCTGGCCCACTG
TGGGCAGGATCGATGATGCCTATGGTGACAAGCACCTTGTGTGTACCTGT
CCGCCAATACTGCCTGATTTAGCAAGCTTTCTAGACCAT

BO13822.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:48:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG3999-RB 2958 CG3999-PB 1..2955 17..2971 14745 99.9 Plus
CG3999-RA 2958 CG3999-PA 1..2955 17..2971 14745 99.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:48:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG3999-RB 3074 CG3999-RB 62..3017 16..2971 14750 99.9 Plus
CG3999-RA 3197 CG3999-RA 62..3017 16..2971 14750 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:48:07
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 10253585..10254919 1529..2863 6660 99.9 Plus
3R 32079331 3R 10252797..10253531 799..1533 3675 100 Plus
3R 32079331 3R 10252171..10252697 273..799 2620 99.8 Plus
3R 32079331 3R 10251579..10251756 16..193 890 100 Plus
3R 32079331 3R 10254981..10255088 2864..2971 540 100 Plus
3R 32079331 3R 10251887..10251967 192..272 405 100 Plus
Blast to na_te.dros performed on 2014-11-27 10:48:08 has no hits.

BO13822.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:41:40 Download gff for BO13822.complete
Subject Subject Range Query Range Percent Splice Strand
CG3999-RA 62..3021 16..2976 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:42:21 Download gff for BO13822.complete
Subject Subject Range Query Range Percent Splice Strand
CG3999-RA 63..3017 17..2973 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:08:13 Download gff for BO13822.complete
Subject Subject Range Query Range Percent Splice Strand
CG3999-RA 63..3017 17..2973 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:31:11 Download gff for BO13822.complete
Subject Subject Range Query Range Percent Splice Strand
CG3999-RA 63..3017 17..2973 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:31:11 Download gff for BO13822.complete
Subject Subject Range Query Range Percent Splice Strand
3R 10251580..10251756 17..193 100 -> Plus
3R 10251889..10251967 194..272 100 -> Plus
3R 10252171..10252697 273..799 99 -> Plus
3R 10252798..10253531 800..1533 100 -> Plus
3R 10253590..10254919 1534..2863 99 -> Plus
3R 10254981..10255088 2864..2973 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:42:21 Download gff for BO13822.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 6077302..6077478 17..193 100 -> Plus
arm_3R 6077611..6077689 194..272 100 -> Plus
arm_3R 6077893..6078419 273..799 99 -> Plus
arm_3R 6078520..6079253 800..1533 100 -> Plus
arm_3R 6079312..6080641 1534..2863 99 -> Plus
arm_3R 6080703..6080810 2864..2973 98   Plus

BO13822.pep Sequence

Translation from 16 to 2989

> BO13822.pep
MQRFLGRSSQSLLLRCGHRYLATTPVEEVIFPTKSDFPSRHIGPRKTDVV
AMLDTLGFKSLAELTEKAVPQSIQLKRELDLDKPLNEHELIRRIRDISLK
NQLWRSYIGMGYHNCHVPHTIIRNMFENPGWTTQYTPYQPEIAQGRLESL
LNYQTLVTDLTGLDVANASLLDEGTAAAEAMCLATRHNKRKKLYLSNRVH
PQTLSVVKTRTEALELEIVVGPIEQADLPSRELAGILLQYPDTYGDVKDF
EDIAALAKKNGTLVVVATDLLSLTLLRPPAEFGADIAVGTSQRLGVPLGY
GGPHAGFFACKQSLVRLMPGRMIGVTRDMDGNDAYRLALQTREQHIRRDK
ATSNICTAQALLANMSAMYAIYHGPEGLKAMANRIHHFTLTLQTGVLGAG
HEVINKNFFDTLHIRLGGGQSLEDLKERAEHKRINLRYLEDDTVGVALDE
TVSVADVDDLLWVFKAEASVEHILARKDVLKNSIENSKFLRTSPYLQHPI
FQSYHSESRMVRYMKKLENKDISLVHSMIPLGSCTMKLNSTTEMMPCSFR
HFTDIHPFAPVEQAQGFHQMFKELEHDLCEITGYDRISFQPNSGAQGEYA
GLRAIRSYHEHRNEGHRNICLIPISAHGTNPASAQMAGMKVEPIRILSNG
SIDMAHLRAKAEEHAHELSCLMITYPSTMGVFEETVADICTLIHKHGGQV
YLDGANMNAQVGLCRPGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKA
HLAPYLPGHPVVSPLSSEEHSFGVVSAAPFGSSAILPISWSYIKLMGSRG
LKRATQVAILNANYMSKRLEQHYKTLYKAPNSQLVAHEFILDIRDLKKSA
NIEAVDVAKRLMDYGFHAPTMSWPVAGTLMIEPTESEDKEELDRFCDAMI
SIREEIAEIEAGRMDKAVNPLKMSPHTQAQVISDKWDRPYTREQAAFPAI
FVKPDAKIWPTVGRIDDAYGDKHLVCTCPPILPDLASFLDH

BO13822.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:58:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG3999-PB 985 CG3999-PB 1..985 1..985 5156 100 Plus
CG3999-PA 985 CG3999-PA 1..985 1..985 5156 100 Plus