Clone Sequence Records
BO13822.3prime Sequence
800 bp (747 high quality bases) assembled on 2006-05-08
> BO13822.3prime
ATGGTCTAGAAAGCTTGCTAAATCAGGCAGTATTGGCGGACAGGTACACA
CAAGGTGCTTGTCACCATAGGCATCATCGATCCTGCCCACAGTGGGCCAG
ATCTTGGCATCTGGTTTTACAAAGATGGCGGGGAAGGCAGCCTGCTCCCG
TGTATATGGTCGATCCCACTTATCCGAGATCACCTGAGCTTGGGTGTGAG
GAGACATCTTCAGTGGATTGACTGCCTTGTCCATGCGACCCGCCTCGATC
TCGGCAATCTCCTCTCGAATGGAAATCATGGCATCACAGAACCTATCCAA
CTCCTCCTTATCCTCCGATTCAGTGGGCTCGATCATCAGGGTTCCAGCGA
CGGGCCAAGACATAGTTGGTGCATGGAAGCCGTAATCCATGAGTCGCTTG
GCCACATCCACTGCCTCGATATTGGCCGATTTCTTCAGGTCGCGTATATC
CAAAATGAACTCATGCGCAACCAGCTGAGAGTTGGGTGCCTTGTAGAGAG
TCTTGTAATGCTGCTCCAGCCTCTTGGACATGTAGTTTGCATTGAGAATG
GCCACCTGGGTAGCTCTCTTCAAACCCCTGCTGCCCATGAGTTTAATGTA
CGACCAGGATATGGGCAAAATGGCAGAGCTTCCGAAGGGAGCGGCGGATA
CGACTCCAAAACTGTGCTCCTCGCTGCTCAACGGACTGACAACAGGATGA
CCAGGAAGGTATGGTGCCAAATGGGCTTTCACGCCGATGGGACCCATTCC
AGGACCACCACCACCATGCGGAATGCAGAAGGTCTTGTGCAGGTTGAGAT
BO13822.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:11:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3999-PA | 2958 | CG3999-RA | 2174..2955 | 800..19 | 3910 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 12:29:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3999-RB | 3074 | CG3999-RB | 2236..3017 | 800..19 | 3910 | 100 | Minus |
CG3999-RA | 3197 | CG3999-RA | 2236..3017 | 800..19 | 3910 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 12:29:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 10254246..10254919 | 800..127 | 3370 | 100 | Minus |
3R | 32079331 | 3R | 10254981..10255088 | 126..19 | 540 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-08 12:29:16 has no hits.
BO13822.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:13:05 Download gff for
BO13822.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3999-PA | 2174..2958 | 15..800 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:02:54 Download gff for
BO13822.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3999-PA | 2174..2958 | 15..800 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:37:46 Download gff for
BO13822.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3999-RA | 2236..3021 | 14..800 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 15:21:42 Download gff for
BO13822.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3999-RA | 2236..3021 | 14..800 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 15:21:42 Download gff for
BO13822.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 10254981..10255092 | 14..126 | 98 | | Minus |
3R | 10254246..10254919 | 127..800 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:37:46 Download gff for
BO13822.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 6080703..6080814 | 14..126 | 98 | | Minus |
arm_3R | 6079968..6080641 | 127..800 | 100 | -> | Minus |
BO13822.5prime Sequence
889 bp (764 high quality bases) assembled on 2006-05-08
> BO13822.5prime
GAAGTTATCAGTCGACATGCAGCGATTTTTGGGAAGGAGCAGCCAAAGCC
TTTTGCTAAGATGTGGTCATCGCTATCTGGCCACCACTCCTGTGGAGGAG
GTCATATTTCCCACCAAATCGGATTTTCCCAGTCGTCATATTGGGCCTCG
AAAGACGGATGTGGTGGCCATGTTGGATACTTTGGGCTTCAAGTCCCTGG
CGGAGCTCACAGAGAAAGCTGTGCCCCAGAGCATTCAACTGAAGAGGGAA
CTCGACCTGGACAAACCTCTGAATGAGCACGAGCTAATCCGCCGAATTCG
CGACATCTCGCTAAAGAATCAACTGTGGCGCTCCTACATCGGAATGGGTT
ACCACAACTGCCATGTGCCGCACACCATTATCCGGAATATGTTCGAGAAT
CCGGGTTGGACCACTCAGTACACCCCGTACCAGCCGGAAATCGCCCAGGG
ACGCTTGGAGTCGCTGCTGAACTATCAGACCCTGGTAACCGATCTCACCG
GCTTGGATGTGGCCAATGCCTCGCTATTGGACGAGGGAACCGCTGCTGCC
GAGGCCATGTGCCTGGCCACCAGGCACAACAAGCGCAAAAAGCTCTACCT
GTCGAACAGGGTGCATCCGCAGACGCTGTCCGTAGTCAAGACGCGAACGG
AAGCCTTGGAGCTGGAAATCGTGGTGGGACCTATTGAACAGGCGGATCTG
CCAAGCCGCGAATTGGCTGGCATTCTTCTCCAGTATCCAGATACTTATGG
TGATGTCAAGGACTTCGAGGATATCGCAGCTTTGGCAAAAAAAATGGGAC
CCTCGTGGTGGTGGCGACCGATTTGTTGTCGTTAACCCTTCTGCGTCCTC
CGGCGGAATTTGGAGCTGATATTGCAGTGGGGACCTCCC
BO13822.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:11:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3999-PA | 2958 | CG3999-RA | 1..773 | 17..789 | 3840 | 99.8 | Plus |
CG3999-PA | 2958 | CG3999-RA | 775..874 | 790..889 | 475 | 99 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:16:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3999-RB | 3074 | CG3999-RB | 62..936 | 16..889 | 4320 | 99.7 | Plus |
CG3999-RA | 3197 | CG3999-RA | 62..936 | 16..889 | 4320 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:16:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 10252171..10252692 | 273..794 | 2580 | 99.6 | Plus |
3R | 32079331 | 3R | 10251579..10251756 | 16..193 | 890 | 100 | Plus |
3R | 32079331 | 3R | 10252797..10252888 | 798..889 | 445 | 98.9 | Plus |
3R | 32079331 | 3R | 10251887..10251967 | 192..272 | 405 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 06:16:28 has no hits.
BO13822.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:13:07 Download gff for
BO13822.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3999-PA | 1..874 | 17..889 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:02:55 Download gff for
BO13822.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3999-PA | 1..874 | 17..889 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:02:02 Download gff for
BO13822.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3999-RA | 62..936 | 16..889 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:00:27 Download gff for
BO13822.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3999-RA | 62..936 | 16..889 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:00:27 Download gff for
BO13822.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 10251579..10251756 | 16..193 | 100 | -> | Plus |
3R | 10251889..10251967 | 194..272 | 100 | -> | Plus |
3R | 10252171..10252697 | 273..798 | 99 | -> | Plus |
3R | 10252798..10252888 | 799..889 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:02:02 Download gff for
BO13822.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 6077301..6077478 | 16..193 | 100 | -> | Plus |
arm_3R | 6077611..6077689 | 194..272 | 100 | -> | Plus |
arm_3R | 6077893..6078419 | 273..798 | 99 | -> | Plus |
arm_3R | 6078520..6078610 | 799..889 | 98 | | Plus |
BO13822.complete Sequence
2989 bp assembled on 2008-08-14
GenBank Submission: FJ632938
> BO13822.complete
GAAGTTATCAGTCGACATGCAGCGATTTTTGGGAAGGAGCAGCCAAAGCC
TTTTGCTAAGATGTGGTCATCGCTATCTGGCCACCACTCCTGTGGAGGAG
GTCATATTTCCCACCAAATCGGATTTTCCCAGTCGTCATATTGGGCCTCG
AAAGACGGATGTGGTGGCCATGTTGGATACTTTGGGCTTCAAGTCCCTGG
CGGAGCTCACAGAGAAAGCTGTGCCCCAGAGCATTCAACTGAAGAGGGAA
CTCGACCTGGACAAACCTCTGAATGAGCACGAGCTAATCCGCCGAATTCG
CGACATCTCGCTAAAGAATCAACTGTGGCGCTCCTACATCGGAATGGGTT
ACCACAACTGCCATGTGCCGCACACCATTATCCGGAATATGTTCGAGAAT
CCGGGTTGGACCACTCAGTACACCCCGTACCAGCCGGAAATCGCCCAGGG
ACGCTTGGAGTCGCTGCTGAACTATCAGACCCTGGTAACCGATCTCACCG
GCTTGGATGTGGCCAATGCCTCGCTATTGGACGAGGGAACCGCTGCTGCC
GAGGCCATGTGCCTGGCCACCAGGCACAACAAGCGCAAAAAGCTCTACCT
GTCGAACAGGGTGCATCCGCAGACGCTGTCCGTAGTCAAGACGCGAACGG
AAGCCTTGGAGCTGGAAATCGTGGTGGGACCTATTGAACAGGCGGATCTG
CCAAGCCGCGAATTGGCTGGCATTCTTCTCCAGTATCCAGATACTTATGG
TGATGTCAAGGACTTCGAGGATATCGCAGCTTTGGCAAAGAAAAATGGGA
CCCTCGTGGTGGTGGCGACCGATTTGTTGTCGTTAACCCTTCTGCGTCCT
CCGGCGGAATTTGGAGCTGATATTGCAGTGGGAACCTCCCAGCGATTGGG
AGTTCCTCTGGGATACGGTGGCCCCCATGCCGGATTTTTTGCCTGCAAGC
AGAGCTTGGTGCGGCTAATGCCGGGAAGGATGATTGGCGTGACCAGGGAT
ATGGACGGAAACGATGCCTATCGTCTGGCCCTGCAAACCAGGGAGCAGCA
TATCCGGCGGGATAAGGCAACAAGTAACATTTGCACGGCACAGGCTCTTC
TGGCCAACATGTCGGCCATGTACGCCATCTACCACGGTCCGGAGGGTCTG
AAAGCCATGGCCAATCGCATCCACCATTTCACGTTGACCCTTCAAACGGG
TGTCCTGGGAGCGGGTCACGAAGTGATCAACAAGAACTTCTTCGACACAC
TTCACATTAGACTGGGTGGAGGTCAATCCCTTGAGGATCTCAAAGAGCGT
GCCGAGCACAAGCGCATTAATCTCCGATATCTTGAAGATGACACTGTTGG
CGTGGCCCTTGATGAAACGGTCAGTGTAGCCGATGTGGACGATCTGTTGT
GGGTCTTCAAGGCAGAGGCATCTGTGGAACACATTCTGGCGCGTAAAGAT
GTCCTTAAGAACTCGATTGAGAACTCCAAGTTCCTGCGCACTTCGCCCTA
TCTGCAGCACCCTATTTTCCAGAGCTATCACAGCGAGTCCCGCATGGTGC
GCTACATGAAAAAGCTGGAGAATAAGGACATCTCCCTGGTGCACTCCATG
ATCCCCCTGGGATCCTGCACTATGAAGCTGAACTCCACCACCGAGATGAT
GCCTTGTTCCTTCCGCCACTTCACCGATATCCATCCTTTTGCGCCGGTGG
AACAAGCCCAGGGATTCCATCAGATGTTCAAGGAACTGGAGCATGACCTA
TGCGAGATTACAGGATACGATCGTATCTCCTTCCAGCCGAACTCGGGGGC
CCAAGGAGAATATGCAGGACTGAGAGCCATCAGGAGCTACCATGAACACC
GAAATGAAGGACACAGAAATATTTGTCTGATTCCAATTTCTGCCCACGGC
ACAAATCCAGCTTCTGCACAAATGGCGGGTATGAAGGTGGAGCCTATTAG
AATTTTGTCGAATGGTTCCATCGACATGGCACACCTAAGAGCTAAGGCAG
AGGAGCACGCCCACGAGTTGTCCTGCCTAATGATTACCTATCCATCGACA
ATGGGCGTGTTCGAGGAAACGGTTGCCGATATTTGCACCCTGATCCACAA
GCATGGCGGACAGGTGTACCTGGATGGAGCCAACATGAATGCCCAGGTTG
GGCTGTGTCGACCTGGAGATTATGGCAGCGATGTTTCGCATCTCAACCTG
CACAAGACCTTCTGCATTCCGCATGGTGGTGGTGGTCCTGGAATGGGTCC
CATCGGCGTGAAAGCCCATTTGGCACCATACCTTCCTGGTCATCCTGTTG
TCAGTCCGTTGAGCAGCGAGGAGCACAGTTTTGGAGTCGTATCCGCCGCT
CCCTTCGGAAGCTCTGCCATTTTGCCCATATCCTGGTCGTACATTAAACT
CATGGGCAGCAGGGGTTTGAAGAGAGCTACCCAGGTGGCCATTCTCAATG
CAAACTACATGTCCAAGAGGCTGGAGCAGCATTACAAGACTCTCTACAAG
GCACCCAACTCTCAGCTGGTTGCGCATGAGTTCATTTTGGATATACGCGA
CCTGAAGAAATCGGCCAATATCGAGGCAGTGGATGTGGCCAAGCGACTCA
TGGATTACGGCTTCCATGCACCAACTATGTCTTGGCCCGTCGCTGGAACC
CTGATGATCGAGCCCACTGAATCGGAGGATAAGGAGGAGTTGGATAGGTT
CTGTGATGCCATGATTTCCATTCGAGAGGAGATTGCCGAGATCGAGGCGG
GTCGCATGGACAAGGCAGTCAATCCACTGAAGATGTCTCCTCACACCCAA
GCTCAGGTGATCTCGGATAAGTGGGATCGACCATATACACGGGAGCAGGC
TGCCTTCCCCGCCATCTTTGTAAAACCAGATGCCAAGATCTGGCCCACTG
TGGGCAGGATCGATGATGCCTATGGTGACAAGCACCTTGTGTGTACCTGT
CCGCCAATACTGCCTGATTTAGCAAGCTTTCTAGACCAT
BO13822.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:48:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3999-RB | 2958 | CG3999-PB | 1..2955 | 17..2971 | 14745 | 99.9 | Plus |
CG3999-RA | 2958 | CG3999-PA | 1..2955 | 17..2971 | 14745 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:48:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3999-RB | 3074 | CG3999-RB | 62..3017 | 16..2971 | 14750 | 99.9 | Plus |
CG3999-RA | 3197 | CG3999-RA | 62..3017 | 16..2971 | 14750 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:48:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 10253585..10254919 | 1529..2863 | 6660 | 99.9 | Plus |
3R | 32079331 | 3R | 10252797..10253531 | 799..1533 | 3675 | 100 | Plus |
3R | 32079331 | 3R | 10252171..10252697 | 273..799 | 2620 | 99.8 | Plus |
3R | 32079331 | 3R | 10251579..10251756 | 16..193 | 890 | 100 | Plus |
3R | 32079331 | 3R | 10254981..10255088 | 2864..2971 | 540 | 100 | Plus |
3R | 32079331 | 3R | 10251887..10251967 | 192..272 | 405 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 10:48:08 has no hits.
BO13822.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:41:40 Download gff for
BO13822.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3999-RA | 62..3021 | 16..2976 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:42:21 Download gff for
BO13822.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3999-RA | 63..3017 | 17..2973 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:08:13 Download gff for
BO13822.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3999-RA | 63..3017 | 17..2973 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:31:11 Download gff for
BO13822.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3999-RA | 63..3017 | 17..2973 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:31:11 Download gff for
BO13822.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 10251580..10251756 | 17..193 | 100 | -> | Plus |
3R | 10251889..10251967 | 194..272 | 100 | -> | Plus |
3R | 10252171..10252697 | 273..799 | 99 | -> | Plus |
3R | 10252798..10253531 | 800..1533 | 100 | -> | Plus |
3R | 10253590..10254919 | 1534..2863 | 99 | -> | Plus |
3R | 10254981..10255088 | 2864..2973 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:42:21 Download gff for
BO13822.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 6077302..6077478 | 17..193 | 100 | -> | Plus |
arm_3R | 6077611..6077689 | 194..272 | 100 | -> | Plus |
arm_3R | 6077893..6078419 | 273..799 | 99 | -> | Plus |
arm_3R | 6078520..6079253 | 800..1533 | 100 | -> | Plus |
arm_3R | 6079312..6080641 | 1534..2863 | 99 | -> | Plus |
arm_3R | 6080703..6080810 | 2864..2973 | 98 | | Plus |
BO13822.pep Sequence
Translation from 16 to 2989
> BO13822.pep
MQRFLGRSSQSLLLRCGHRYLATTPVEEVIFPTKSDFPSRHIGPRKTDVV
AMLDTLGFKSLAELTEKAVPQSIQLKRELDLDKPLNEHELIRRIRDISLK
NQLWRSYIGMGYHNCHVPHTIIRNMFENPGWTTQYTPYQPEIAQGRLESL
LNYQTLVTDLTGLDVANASLLDEGTAAAEAMCLATRHNKRKKLYLSNRVH
PQTLSVVKTRTEALELEIVVGPIEQADLPSRELAGILLQYPDTYGDVKDF
EDIAALAKKNGTLVVVATDLLSLTLLRPPAEFGADIAVGTSQRLGVPLGY
GGPHAGFFACKQSLVRLMPGRMIGVTRDMDGNDAYRLALQTREQHIRRDK
ATSNICTAQALLANMSAMYAIYHGPEGLKAMANRIHHFTLTLQTGVLGAG
HEVINKNFFDTLHIRLGGGQSLEDLKERAEHKRINLRYLEDDTVGVALDE
TVSVADVDDLLWVFKAEASVEHILARKDVLKNSIENSKFLRTSPYLQHPI
FQSYHSESRMVRYMKKLENKDISLVHSMIPLGSCTMKLNSTTEMMPCSFR
HFTDIHPFAPVEQAQGFHQMFKELEHDLCEITGYDRISFQPNSGAQGEYA
GLRAIRSYHEHRNEGHRNICLIPISAHGTNPASAQMAGMKVEPIRILSNG
SIDMAHLRAKAEEHAHELSCLMITYPSTMGVFEETVADICTLIHKHGGQV
YLDGANMNAQVGLCRPGDYGSDVSHLNLHKTFCIPHGGGGPGMGPIGVKA
HLAPYLPGHPVVSPLSSEEHSFGVVSAAPFGSSAILPISWSYIKLMGSRG
LKRATQVAILNANYMSKRLEQHYKTLYKAPNSQLVAHEFILDIRDLKKSA
NIEAVDVAKRLMDYGFHAPTMSWPVAGTLMIEPTESEDKEELDRFCDAMI
SIREEIAEIEAGRMDKAVNPLKMSPHTQAQVISDKWDRPYTREQAAFPAI
FVKPDAKIWPTVGRIDDAYGDKHLVCTCPPILPDLASFLDH
BO13822.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:58:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3999-PB | 985 | CG3999-PB | 1..985 | 1..985 | 5156 | 100 | Plus |
CG3999-PA | 985 | CG3999-PA | 1..985 | 1..985 | 5156 | 100 | Plus |