Clone Sequence Records
BO13823.3prime Sequence
506 bp (505 high quality bases) assembled on 2006-05-08
> BO13823.3prime
ATGGTCTAGAAAGCTTGCTTGGCGCACTTGTCCGCCGAGTCGTCCATGTC
CTCGTAAAAACAGGAACGCGAAATCACCCGCTTGCCGTAGACTTCTTGCA
CCAGTTTCTTGCAGACAGGCCGGGCATTCACCGATTTGGCGCCCACCGAG
TAGGTGCAGTTCACGTAGCTCCAGTACCGCTGCTGCTCCGAAATGGTCTC
CGGCATGAAGGGATCGTTGCAGAACTCGCCATTGGAGACGTCCGTCGAAC
AGCGCCAGCATCGCAGCACCGCGGAAGCTGTATTGAAAACCATCAGCAAG
GAGAAAAGGCCCAGCAAGAGGCAGCCGGTTGAACCGTAGGCCATGATACA
ATAATTCCTTCTTTTTATGCGTTTCTCGGTTGATTCCAGGTATATCACTG
CACAAGCACTGCACTTTAGGGGTATTTGAATTTGCCTTAGCTAACGATAC
TCCACAATAACATTCGCTTTGCGCGATTTTCCGAACACGCATGTCGACTG
ATAACT
BO13823.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:11:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31676-PA | 480 | CG31676-RA | 1..326 | 344..19 | 1605 | 99.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:38:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31676-RB | 1107 | CG31676-RB | 80..554 | 493..19 | 2360 | 99.8 | Minus |
CG31676-RA | 1056 | CG31676-RA | 29..503 | 493..19 | 2360 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:38:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 20840829..20841044 | 493..278 | 1080 | 100 | Minus |
2L | 23513712 | 2L | 20845340..20845528 | 280..92 | 930 | 99.5 | Minus |
2L | 23513712 | 2L | 20848555..20848629 | 93..19 | 375 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 15:38:50 has no hits.
BO13823.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:13:08 Download gff for
BO13823.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31676-PA | 1..326 | 19..344 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:02:57 Download gff for
BO13823.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31676-PA | 1..326 | 19..344 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 23:16:37 Download gff for
BO13823.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31676-RA | 17..503 | 19..505 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:25:12 Download gff for
BO13823.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31676-RA | 17..503 | 19..505 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:25:12 Download gff for
BO13823.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 20840817..20841044 | 278..505 | 97 | -> | Minus |
2L | 20845343..20845528 | 92..277 | 99 | -> | Minus |
2L | 20848557..20848629 | 19..91 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 23:16:37 Download gff for
BO13823.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 20840817..20841044 | 278..505 | 97 | -> | Minus |
arm_2L | 20845343..20845528 | 92..277 | 99 | -> | Minus |
arm_2L | 20848557..20848629 | 19..91 | 100 | | Minus |
BO13823.5prime Sequence
506 bp (505 high quality bases) assembled on 2006-05-08
> BO13823.5prime
GAAGTTATCAGTCGACATGCGTGTTCGGAAAATCGCGCAAAGCGAATGTT
ATTGTGGAGTATCGTTAGCTAAGGCAAATTCAAATACCCCTAAAGTGCAG
TGCTTGTGCAGTGATATACCTGGAATCAACCGAGAAACGCATAAAAAGAA
GGAATTATTGTATCATGGCCTACGGTTCAACCGGCTGCCTCTTGCTGGGC
CTTTTCTCCTTGCTGATGGTTTTCAATACAGCTTCCGCGGTGCTGCGATG
CTGGCGCTGTTCGACGGACGTCTCCAATGGCGAGTTCTGCAACGATCCCT
TCATGCCGGAGACCATTTCGGAGCAGCAGCGGTACTGGAGCTACGTGAAC
TGCACCTACTCGGTGGGCGCCAAATCGGTGAATGCCCGGCCTGTCTGCAA
GAAACTGGTGCAAGAAGTCTACGGCAAGCGGGTGATTTCGCGTTCCTGTT
TTTACGAGGACATGGACGACTCGGCGGACAAGTGCGCCAAGCAAGCTTTC
TAGACC
BO13823.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:11:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31676-PA | 480 | CG31676-RA | 1..326 | 165..490 | 1605 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:08:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31676-RB | 1107 | CG31676-RB | 80..554 | 16..490 | 2360 | 99.8 | Plus |
CG31676-RA | 1056 | CG31676-RA | 29..503 | 16..490 | 2360 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:08:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 20840829..20841044 | 16..231 | 1080 | 100 | Plus |
2L | 23513712 | 2L | 20845340..20845528 | 229..417 | 930 | 99.5 | Plus |
2L | 23513712 | 2L | 20848555..20848629 | 416..490 | 375 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 19:08:32 has no hits.
BO13823.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:13:08 Download gff for
BO13823.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31676-PA | 1..326 | 165..490 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:02:59 Download gff for
BO13823.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31676-PA | 1..326 | 165..490 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:15:17 Download gff for
BO13823.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31676-RA | 17..503 | 4..490 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:44:24 Download gff for
BO13823.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31676-RA | 17..503 | 4..490 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:44:24 Download gff for
BO13823.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 20840817..20841044 | 4..231 | 97 | -> | Plus |
2L | 20845343..20845528 | 232..417 | 99 | -> | Plus |
2L | 20848557..20848629 | 418..490 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:15:17 Download gff for
BO13823.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 20840817..20841044 | 4..231 | 97 | -> | Plus |
arm_2L | 20845343..20845528 | 232..417 | 99 | -> | Plus |
arm_2L | 20848557..20848629 | 418..490 | 100 | | Plus |
BO13823.complete Sequence
508 bp assembled on 2006-10-11
> BO13823.complete
GAAGTTATCAGTCGACATGCGTGTTCGGAAAATCGCGCAAAGCGAATGTT
ATTGTGGAGTATCGTTAGCTAAGGCAAATTCAAATACCCCTAAAGTGCAG
TGCTTGTGCAGTGATATACCTGGAATCAACCGAGAAACGCATAAAAAGAA
GGAATTATTGTATCATGGCCTACGGTTCAACCGGCTGCCTCTTGCTGGGC
CTTTTCTCCTTGCTGATGGTTTTCAATACAGCTTCCGCGGTGCTGCGATG
CTGGCGCTGTTCGACGGACGTCTCCAATGGCGAGTTCTGCAACGATCCCT
TCATGCCGGAGACCATTTCGGAGCAGCAGCGGTACTGGAGCTACGTGAAC
TGCACCTACTCGGTGGGCGCCAAATCGGTGAATGCCCGGCCTGTCTGCAA
GAAACTGGTGCAAGAAGTCTACGGCAAGCGGGTGATTTCGCGTTCCTGTT
TTTACGAGGACATGGACGACTCGGCGGACAAGTGCGCCAAGCAAGCTTTC
TAGACCAT
BO13823.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:20:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31676-RB | 480 | CG31676-PB | 1..326 | 165..490 | 1615 | 99.7 | Plus |
CG31676-RA | 480 | CG31676-PA | 1..326 | 165..490 | 1615 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:20:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31676-RB | 1107 | CG31676-RB | 80..554 | 16..490 | 2360 | 99.8 | Plus |
CG31676-RA | 1056 | CG31676-RA | 29..503 | 16..490 | 2360 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:20:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 20840829..20841044 | 16..231 | 1080 | 100 | Plus |
2L | 23513712 | 2L | 20845340..20845528 | 229..417 | 930 | 99.5 | Plus |
2L | 23513712 | 2L | 20848555..20848629 | 416..490 | 375 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 01:20:45 has no hits.
BO13823.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:44:42 Download gff for
BO13823.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31676-RA | 1..326 | 165..490 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:58:38 Download gff for
BO13823.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31676-RA | 18..504 | 4..490 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:46:59 Download gff for
BO13823.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31676-RA | 30..503 | 17..492 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:44:42 Download gff for
BO13823.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31676-RA | 18..504 | 4..490 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:51:32 Download gff for
BO13823.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31676-RA | 30..503 | 17..492 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:51:32 Download gff for
BO13823.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 20840830..20841044 | 17..231 | 100 | -> | Plus |
2L | 20845343..20845528 | 232..417 | 99 | -> | Plus |
2L | 20848557..20848629 | 418..492 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:46:59 Download gff for
BO13823.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 20840830..20841044 | 17..231 | 100 | -> | Plus |
arm_2L | 20845343..20845528 | 232..417 | 99 | -> | Plus |
arm_2L | 20848557..20848629 | 418..492 | 97 | | Plus |
BO13823.pep Sequence
Translation from 16 to 508
> BO13823.pep
MRVRKIAQSECYCGVSLAKANSNTPKVQCLCSDIPGINRETHKKKELLYH
GLRFNRLPLAGPFLLADGFQYSFRGAAMLALFDGRLQWRVLQRSLHAGDH
FGAAAVLELRELHLLGGRQIGECPACLQETGARSLRQAGDFAFLFLRGHG
RLGGQVRQASFLDH
Sequence BO13823.pep has no blast hits.