Clone BO13823 Report

Search the DGRC for BO13823

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:138
Well:23
Vector:pDNR-Dual
Associated Gene/Transcript
Protein status:BO13823.pep:
Sequenced Size:508

Clone Sequence Records

BO13823.3prime Sequence

506 bp (505 high quality bases) assembled on 2006-05-08

> BO13823.3prime
ATGGTCTAGAAAGCTTGCTTGGCGCACTTGTCCGCCGAGTCGTCCATGTC
CTCGTAAAAACAGGAACGCGAAATCACCCGCTTGCCGTAGACTTCTTGCA
CCAGTTTCTTGCAGACAGGCCGGGCATTCACCGATTTGGCGCCCACCGAG
TAGGTGCAGTTCACGTAGCTCCAGTACCGCTGCTGCTCCGAAATGGTCTC
CGGCATGAAGGGATCGTTGCAGAACTCGCCATTGGAGACGTCCGTCGAAC
AGCGCCAGCATCGCAGCACCGCGGAAGCTGTATTGAAAACCATCAGCAAG
GAGAAAAGGCCCAGCAAGAGGCAGCCGGTTGAACCGTAGGCCATGATACA
ATAATTCCTTCTTTTTATGCGTTTCTCGGTTGATTCCAGGTATATCACTG
CACAAGCACTGCACTTTAGGGGTATTTGAATTTGCCTTAGCTAACGATAC
TCCACAATAACATTCGCTTTGCGCGATTTTCCGAACACGCATGTCGACTG
ATAACT

BO13823.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:11:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG31676-PA 480 CG31676-RA 1..326 344..19 1605 99.6 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:38:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG31676-RB 1107 CG31676-RB 80..554 493..19 2360 99.8 Minus
CG31676-RA 1056 CG31676-RA 29..503 493..19 2360 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:38:46
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 20840829..20841044 493..278 1080 100 Minus
2L 23513712 2L 20845340..20845528 280..92 930 99.5 Minus
2L 23513712 2L 20848555..20848629 93..19 375 100 Minus
Blast to na_te.dros performed on 2015-02-10 15:38:50 has no hits.

BO13823.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:13:08 Download gff for BO13823.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31676-PA 1..326 19..344 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:02:57 Download gff for BO13823.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31676-PA 1..326 19..344 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 23:16:37 Download gff for BO13823.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31676-RA 17..503 19..505 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:25:12 Download gff for BO13823.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31676-RA 17..503 19..505 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:25:12 Download gff for BO13823.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 20840817..20841044 278..505 97 -> Minus
2L 20845343..20845528 92..277 99 -> Minus
2L 20848557..20848629 19..91 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 23:16:37 Download gff for BO13823.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 20840817..20841044 278..505 97 -> Minus
arm_2L 20845343..20845528 92..277 99 -> Minus
arm_2L 20848557..20848629 19..91 100   Minus

BO13823.5prime Sequence

506 bp (505 high quality bases) assembled on 2006-05-08

> BO13823.5prime
GAAGTTATCAGTCGACATGCGTGTTCGGAAAATCGCGCAAAGCGAATGTT
ATTGTGGAGTATCGTTAGCTAAGGCAAATTCAAATACCCCTAAAGTGCAG
TGCTTGTGCAGTGATATACCTGGAATCAACCGAGAAACGCATAAAAAGAA
GGAATTATTGTATCATGGCCTACGGTTCAACCGGCTGCCTCTTGCTGGGC
CTTTTCTCCTTGCTGATGGTTTTCAATACAGCTTCCGCGGTGCTGCGATG
CTGGCGCTGTTCGACGGACGTCTCCAATGGCGAGTTCTGCAACGATCCCT
TCATGCCGGAGACCATTTCGGAGCAGCAGCGGTACTGGAGCTACGTGAAC
TGCACCTACTCGGTGGGCGCCAAATCGGTGAATGCCCGGCCTGTCTGCAA
GAAACTGGTGCAAGAAGTCTACGGCAAGCGGGTGATTTCGCGTTCCTGTT
TTTACGAGGACATGGACGACTCGGCGGACAAGTGCGCCAAGCAAGCTTTC
TAGACC

BO13823.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:11:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG31676-PA 480 CG31676-RA 1..326 165..490 1605 99.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:08:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG31676-RB 1107 CG31676-RB 80..554 16..490 2360 99.8 Plus
CG31676-RA 1056 CG31676-RA 29..503 16..490 2360 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:08:30
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 20840829..20841044 16..231 1080 100 Plus
2L 23513712 2L 20845340..20845528 229..417 930 99.5 Plus
2L 23513712 2L 20848555..20848629 416..490 375 100 Plus
Blast to na_te.dros performed on 2015-02-12 19:08:32 has no hits.

BO13823.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:13:08 Download gff for BO13823.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31676-PA 1..326 165..490 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:02:59 Download gff for BO13823.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31676-PA 1..326 165..490 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:15:17 Download gff for BO13823.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31676-RA 17..503 4..490 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:44:24 Download gff for BO13823.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31676-RA 17..503 4..490 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:44:24 Download gff for BO13823.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 20840817..20841044 4..231 97 -> Plus
2L 20845343..20845528 232..417 99 -> Plus
2L 20848557..20848629 418..490 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:15:17 Download gff for BO13823.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 20840817..20841044 4..231 97 -> Plus
arm_2L 20845343..20845528 232..417 99 -> Plus
arm_2L 20848557..20848629 418..490 100   Plus

BO13823.complete Sequence

508 bp assembled on 2006-10-11

> BO13823.complete
GAAGTTATCAGTCGACATGCGTGTTCGGAAAATCGCGCAAAGCGAATGTT
ATTGTGGAGTATCGTTAGCTAAGGCAAATTCAAATACCCCTAAAGTGCAG
TGCTTGTGCAGTGATATACCTGGAATCAACCGAGAAACGCATAAAAAGAA
GGAATTATTGTATCATGGCCTACGGTTCAACCGGCTGCCTCTTGCTGGGC
CTTTTCTCCTTGCTGATGGTTTTCAATACAGCTTCCGCGGTGCTGCGATG
CTGGCGCTGTTCGACGGACGTCTCCAATGGCGAGTTCTGCAACGATCCCT
TCATGCCGGAGACCATTTCGGAGCAGCAGCGGTACTGGAGCTACGTGAAC
TGCACCTACTCGGTGGGCGCCAAATCGGTGAATGCCCGGCCTGTCTGCAA
GAAACTGGTGCAAGAAGTCTACGGCAAGCGGGTGATTTCGCGTTCCTGTT
TTTACGAGGACATGGACGACTCGGCGGACAAGTGCGCCAAGCAAGCTTTC
TAGACCAT

BO13823.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:20:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG31676-RB 480 CG31676-PB 1..326 165..490 1615 99.7 Plus
CG31676-RA 480 CG31676-PA 1..326 165..490 1615 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:20:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG31676-RB 1107 CG31676-RB 80..554 16..490 2360 99.8 Plus
CG31676-RA 1056 CG31676-RA 29..503 16..490 2360 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:20:44
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 20840829..20841044 16..231 1080 100 Plus
2L 23513712 2L 20845340..20845528 229..417 930 99.5 Plus
2L 23513712 2L 20848555..20848629 416..490 375 100 Plus
Blast to na_te.dros performed on 2014-11-28 01:20:45 has no hits.

BO13823.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:44:42 Download gff for BO13823.complete
Subject Subject Range Query Range Percent Splice Strand
CG31676-RA 1..326 165..490 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:58:38 Download gff for BO13823.complete
Subject Subject Range Query Range Percent Splice Strand
CG31676-RA 18..504 4..490 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:46:59 Download gff for BO13823.complete
Subject Subject Range Query Range Percent Splice Strand
CG31676-RA 30..503 17..492 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:44:42 Download gff for BO13823.complete
Subject Subject Range Query Range Percent Splice Strand
CG31676-RA 18..504 4..490 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:51:32 Download gff for BO13823.complete
Subject Subject Range Query Range Percent Splice Strand
CG31676-RA 30..503 17..492 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:51:32 Download gff for BO13823.complete
Subject Subject Range Query Range Percent Splice Strand
2L 20840830..20841044 17..231 100 -> Plus
2L 20845343..20845528 232..417 99 -> Plus
2L 20848557..20848629 418..492 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:46:59 Download gff for BO13823.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 20840830..20841044 17..231 100 -> Plus
arm_2L 20845343..20845528 232..417 99 -> Plus
arm_2L 20848557..20848629 418..492 97   Plus

BO13823.pep Sequence

Translation from 16 to 508

> BO13823.pep
MRVRKIAQSECYCGVSLAKANSNTPKVQCLCSDIPGINRETHKKKELLYH
GLRFNRLPLAGPFLLADGFQYSFRGAAMLALFDGRLQWRVLQRSLHAGDH
FGAAAVLELRELHLLGGRQIGECPACLQETGARSLRQAGDFAFLFLRGHG
RLGGQVRQASFLDH
Sequence BO13823.pep has no blast hits.