Clone Sequence Records
BO13824.5prime Sequence
341 bp (340 high quality bases) assembled on 2006-05-08
> BO13824.5prime
GAAGTTATCAGTCGACATGGCCGCCGCTATCAAGAAGATCATCCCCATGC
TGGACCGCATCCTAATCCAGCGTGCCGAGGCGCTGACCAAGACGAAAGGA
GGCATTGTTTTGCCGGAGAAAGCGGTGGGCAAAGTACTTGAGGGCACCGT
TCTGGCCGTAGGCCCTGGCACCCGTAATGCCTCCACTGGCAACCACATTC
CCATTGGCGTGAAGGAGGGCGATCGTGTTCTGCTGCCCGAATTCGGTGGC
ACCAAGGTGAACCTAGAGGGTGACCAGAAGGAGCTGTTCCTCTTCCGCGA
GTCCGACATCCTGGCCAAATTGGAGGCAAGCTTTCTAGACC
BO13824.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:11:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11267-PA | 312 | CG11267-RA | 1..309 | 17..325 | 1545 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:59:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11267-RA | 594 | CG11267-RA | 113..421 | 17..325 | 1545 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:59:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 13016356..13016518 | 19..181 | 815 | 100 | Plus |
3L | 28110227 | 3L | 13016587..13016730 | 182..325 | 720 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 06:59:37 has no hits.
BO13824.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:13:10 Download gff for
BO13824.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11267-PA | 1..312 | 17..326 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:03:02 Download gff for
BO13824.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11267-PA | 1..312 | 17..326 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 17:00:46 Download gff for
BO13824.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11267-RA | 113..421 | 17..325 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:35:15 Download gff for
BO13824.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11267-RA | 113..421 | 17..325 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:35:15 Download gff for
BO13824.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 13016346..13016518 | 7..181 | 97 | -> | Plus |
3L | 13016587..13016730 | 182..325 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 17:00:46 Download gff for
BO13824.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 13009446..13009618 | 7..181 | 97 | -> | Plus |
arm_3L | 13009687..13009830 | 182..325 | 100 | | Plus |
BO13824.3prime Sequence
341 bp (340 high quality bases) assembled on 2006-05-08
> BO13824.3prime
ATGGTCTAGAAAGCTTGCCTCCAATTTGGCCAGGATGTCGGACTCGCGGA
AGAGGAACAGCTCCTTCTGGTCACCCTCTAGGTTCACCTTGGTGCCACCG
AATTCGGGCAGCAGAACACGATCGCCCTCCTTCACGCCAATGGGAATGTG
GTTGCCAGTGGAGGCATTACGGGTGCCAGGGCCTACGGCCAGAACGGTGC
CCTCAAGTACTTTGCCCACCGCTTTCTCCGGCAAAACAATGCCTCCTTTC
GTCTTGGTCAGCGCCTCGGCACGCTGGATTAGGATGCGGTCCAGCATGGG
GATGATCTTCTTGATAGCGGCGGCCATGTCGACTGATAACT
BO13824.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:11:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11267-PA | 312 | CG11267-RA | 1..309 | 327..19 | 1545 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 11:40:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11267-RA | 594 | CG11267-RA | 113..421 | 327..19 | 1545 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 11:40:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 13016356..13016518 | 325..163 | 815 | 100 | Minus |
3L | 28110227 | 3L | 13016587..13016730 | 162..19 | 720 | 100 | Minus |
Blast to na_te.dros performed on 2015-01-31 11:40:07 has no hits.
BO13824.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:13:09 Download gff for
BO13824.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11267-PA | 1..312 | 18..327 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:03:00 Download gff for
BO13824.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11267-PA | 1..312 | 18..327 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:51:18 Download gff for
BO13824.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11267-RA | 113..421 | 19..327 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:57:31 Download gff for
BO13824.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11267-RA | 113..421 | 19..327 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:57:31 Download gff for
BO13824.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 13016346..13016518 | 163..337 | 97 | -> | Minus |
3L | 13016587..13016730 | 19..162 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:51:18 Download gff for
BO13824.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 13009446..13009618 | 163..337 | 97 | -> | Minus |
arm_3L | 13009687..13009830 | 19..162 | 100 | | Minus |
BO13824.complete Sequence
343 bp assembled on 2006-10-11
GenBank Submission: FJ632939
> BO13824.complete
GAAGTTATCAGTCGACATGGCCGCCGCTATCAAGAAGATCATCCCCATGC
TGGACCGCATCCTAATCCAGCGTGCCGAGGCGCTGACCAAGACGAAAGGA
GGCATTGTTTTGCCGGAGAAAGCGGTGGGCAAAGTACTTGAGGGCACCGT
TCTGGCCGTAGGCCCTGGCACCCGTAATGCCTCCACTGGCAACCACATTC
CCATTGGCGTGAAGGAGGGCGATCGTGTTCTGCTGCCCGAATTCGGTGGC
ACCAAGGTGAACCTAGAGGGTGACCAGAAGGAGCTGTTCCTCTTCCGCGA
GTCCGACATCCTGGCCAAATTGGAGGCAAGCTTTCTAGACCAT
BO13824.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:15:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11267-RA | 312 | CG11267-PA | 1..309 | 17..325 | 1545 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:15:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11267-RA | 594 | CG11267-RA | 113..421 | 17..325 | 1545 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:15:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 13016356..13016518 | 19..181 | 815 | 100 | Plus |
3L | 28110227 | 3L | 13016587..13016730 | 182..325 | 720 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 01:15:39 has no hits.
BO13824.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:44:44 Download gff for
BO13824.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11267-RA | 1..312 | 17..326 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:58:39 Download gff for
BO13824.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11267-RA | 106..414 | 17..325 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:49:22 Download gff for
BO13824.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11267-RA | 113..421 | 17..327 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:44:44 Download gff for
BO13824.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11267-RA | 106..414 | 17..325 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:22:00 Download gff for
BO13824.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11267-RA | 113..421 | 17..327 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:22:00 Download gff for
BO13824.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 13016355..13016518 | 17..181 | 99 | -> | Plus |
3L | 13016587..13016730 | 182..327 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:49:22 Download gff for
BO13824.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 13009455..13009618 | 17..181 | 99 | -> | Plus |
arm_3L | 13009687..13009830 | 182..327 | 98 | | Plus |
BO13824.pep Sequence
Translation from 16 to 343
> BO13824.pep
MAAAIKKIIPMLDRILIQRAEALTKTKGGIVLPEKAVGKVLEGTVLAVGP
GTRNASTGNHIPIGVKEGDRVLLPEFGGTKVNLEGDQKELFLFRESDILA
KLEASFLDH
BO13824.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:34:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11267-PA | 103 | CG11267-PA | 1..103 | 1..103 | 509 | 100 | Plus |
CG9920-PA | 102 | CG9920-PA | 1..102 | 1..103 | 333 | 64.1 | Plus |