Clone Sequence Records
BO13827.3prime Sequence
488 bp (487 high quality bases) assembled on 2006-05-08
> BO13827.3prime
ATGGTCTAGAAAGCTTGCGTTCCTGTTCACTTCTATGTGAAACTTGCAGG
CGGGTATGCTTTGCACTTCGGCCGTCACGGTGCTGTTAATGCCTAGATTG
CTGAGAGCTCCTCGCACCAGCCCGCACGTGAAGGCCACGAACTTGGGCGC
GTGCTCCAGCTGCTTGGTGCCCGGCGAGATGCGAGTCAGAAAGCGGAAAG
CCTTGTCCTGCACAACGTACATTCCGTGGTTGTTCGTCCTCAGGTTGTCC
ACTTGCTTCTTGTATATAAGCATCCAGAAGTCGGTGCATATAAACTTCAT
AGTCTCCAACTCGTCCTTAAAACGCGAAACTTCACGGGTGAGCCGCTCAA
TCAGGCGGTAGCCGGTGGTGAAGCCTATATACTCCAAAGTGGCCAGGTCG
TGCTCCTTATTGCTATCCAGACAATAATTGACTATCTCTGCATGGAGGCA
ATCGAAAAGGATTTCTTCAGACATGTCGACTGATAACT
BO13827.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:11:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6196-PA | 459 | CG6196-RA | 1..456 | 474..19 | 2280 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 12:07:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Trs33-RA | 583 | CG6196-RA | 76..531 | 474..19 | 2280 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 12:07:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 15350397..15350785 | 19..407 | 1945 | 100 | Plus |
3R | 32079331 | 3R | 15350851..15350920 | 405..474 | 350 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-06 12:07:07 has no hits.
BO13827.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:13:13 Download gff for
BO13827.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6196-PA | 1..459 | 15..474 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:03:06 Download gff for
BO13827.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6196-PA | 1..459 | 15..474 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 06:57:34 Download gff for
BO13827.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6196-RA | 66..536 | 11..484 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:38:37 Download gff for
BO13827.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Trs33-RA | 66..536 | 11..484 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:38:37 Download gff for
BO13827.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 15350392..15350783 | 11..405 | 98 | <- | Plus |
3R | 15350852..15350930 | 406..484 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 06:57:34 Download gff for
BO13827.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 11176114..11176505 | 11..405 | 98 | <- | Plus |
arm_3R | 11176574..11176652 | 406..484 | 95 | | Plus |
BO13827.5prime Sequence
488 bp (487 high quality bases) assembled on 2006-05-08
> BO13827.5prime
GAAGTTATCAGTCGACATGTCTGAAGAAATCCTTTTCGATTGCCTCCATG
CAGAGATAGTCAATTATTGTCTGGATAGCAATAAGGAGCACGACCTGGCC
ACTTTGGAGTATATAGGCTTCACCACCGGCTACCGCCTGATTGAGCGGCT
CACCCGTGAAGTTTCGCGTTTTAAGGACGAGTTGGAGACTATGAAGTTTA
TATGCACCGACTTCTGGATGCTTATATACAAGAAGCAAGTGGACAACCTG
AGGACGAACAACCACGGAATGTACGTTGTGCAGGACAAGGCTTTCCGCTT
TCTGACTCGCATCTCGCCGGGCACCAAGCAGCTGGAGCACGCGCCCAAGT
TCGTGGCCTTCACGTGCGGGCTGGTGCGAGGAGCTCTCAGCAATCTAGGC
ATTAACAGCACCGTGACGGCCGAAGTGCAAAGCATACCCGCCTGCAAGTT
TCACATAGAAGTGAACAGGAACGCAAGCTTTCTAGACC
BO13827.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:11:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6196-PA | 459 | CG6196-RA | 1..456 | 17..472 | 2280 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 09:30:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Trs33-RA | 583 | CG6196-RA | 76..531 | 17..472 | 2280 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 09:29:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 15350397..15350785 | 472..84 | 1945 | 100 | Minus |
3R | 32079331 | 3R | 15350851..15350920 | 86..17 | 350 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-02 09:30:03 has no hits.
BO13827.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:13:14 Download gff for
BO13827.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6196-PA | 1..459 | 17..476 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:03:08 Download gff for
BO13827.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6196-PA | 1..459 | 17..476 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 03:54:20 Download gff for
BO13827.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6196-RA | 66..536 | 7..480 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:15:22 Download gff for
BO13827.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Trs33-RA | 66..536 | 7..480 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 12:15:22 Download gff for
BO13827.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 15350392..15350783 | 86..480 | 98 | <- | Minus |
3R | 15350852..15350930 | 7..85 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 03:54:20 Download gff for
BO13827.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 11176114..11176505 | 86..480 | 98 | <- | Minus |
arm_3R | 11176574..11176652 | 7..85 | 95 | | Minus |
BO13827.complete Sequence
490 bp assembled on 2006-10-11
GenBank Submission: FJ632940
> BO13827.complete
GAAGTTATCAGTCGACATGTCTGAAGAAATCCTTTTCGATTGCCTCCATG
CAGAGATAGTCAATTATTGTCTGGATAGCAATAAGGAGCACGACCTGGCC
ACTTTGGAGTATATAGGCTTCACCACCGGCTACCGCCTGATTGAGCGGCT
CACCCGTGAAGTTTCGCGTTTTAAGGACGAGTTGGAGACTATGAAGTTTA
TATGCACCGACTTCTGGATGCTTATATACAAGAAGCAAGTGGACAACCTG
AGGACGAACAACCACGGAATGTACGTTGTGCAGGACAAGGCTTTCCGCTT
TCTGACTCGCATCTCGCCGGGCACCAAGCAGCTGGAGCACGCGCCCAAGT
TCGTGGCCTTCACGTGCGGGCTGGTGCGAGGAGCTCTCAGCAATCTAGGC
ATTAACAGCACCGTGACGGCCGAAGTGCAAAGCATACCCGCCTGCAAGTT
TCACATAGAAGTGAACAGGAACGCAAGCTTTCTAGACCAT
BO13827.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:43:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Trs33-RA | 459 | CG6196-PA | 1..456 | 17..472 | 2280 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:43:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Trs33-RA | 583 | CG6196-RA | 76..531 | 17..472 | 2280 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:43:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 15350397..15350785 | 472..84 | 1945 | 100 | Minus |
3R | 32079331 | 3R | 15350851..15350920 | 86..17 | 350 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:43:30 has no hits.
BO13827.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:44:45 Download gff for
BO13827.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6196-RA | 1..459 | 17..476 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:58:41 Download gff for
BO13827.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6196-RA | 90..560 | 7..480 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:30:19 Download gff for
BO13827.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6196-RA | 76..531 | 17..474 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:44:45 Download gff for
BO13827.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6196-RA | 90..560 | 7..480 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:36:52 Download gff for
BO13827.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Trs33-RA | 76..531 | 17..474 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:36:52 Download gff for
BO13827.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 15350395..15350783 | 86..474 | 99 | <- | Minus |
3R | 15350852..15350920 | 17..85 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:30:19 Download gff for
BO13827.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 11176117..11176505 | 86..474 | 99 | <- | Minus |
arm_3R | 11176574..11176642 | 17..85 | 100 | | Minus |
BO13827.pep Sequence
Translation from 16 to 490
> BO13827.pep
MSEEILFDCLHAEIVNYCLDSNKEHDLATLEYIGFTTGYRLIERLTREVS
RFKDELETMKFICTDFWMLIYKKQVDNLRTNNHGMYVVQDKAFRFLTRIS
PGTKQLEHAPKFVAFTCGLVRGALSNLGINSTVTAEVQSIPACKFHIEVN
RNASFLDH
BO13827.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:34:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Trs33-PA | 152 | CG6196-PA | 1..152 | 1..152 | 800 | 100 | Plus |