Clone BO13827 Report

Search the DGRC for BO13827

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:138
Well:27
Vector:pDNR-Dual
Associated Gene/TranscriptCG6196-RA
Protein status:BO13827.pep: validated full length
Sequenced Size:490

Clone Sequence Records

BO13827.3prime Sequence

488 bp (487 high quality bases) assembled on 2006-05-08

> BO13827.3prime
ATGGTCTAGAAAGCTTGCGTTCCTGTTCACTTCTATGTGAAACTTGCAGG
CGGGTATGCTTTGCACTTCGGCCGTCACGGTGCTGTTAATGCCTAGATTG
CTGAGAGCTCCTCGCACCAGCCCGCACGTGAAGGCCACGAACTTGGGCGC
GTGCTCCAGCTGCTTGGTGCCCGGCGAGATGCGAGTCAGAAAGCGGAAAG
CCTTGTCCTGCACAACGTACATTCCGTGGTTGTTCGTCCTCAGGTTGTCC
ACTTGCTTCTTGTATATAAGCATCCAGAAGTCGGTGCATATAAACTTCAT
AGTCTCCAACTCGTCCTTAAAACGCGAAACTTCACGGGTGAGCCGCTCAA
TCAGGCGGTAGCCGGTGGTGAAGCCTATATACTCCAAAGTGGCCAGGTCG
TGCTCCTTATTGCTATCCAGACAATAATTGACTATCTCTGCATGGAGGCA
ATCGAAAAGGATTTCTTCAGACATGTCGACTGATAACT

BO13827.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:11:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG6196-PA 459 CG6196-RA 1..456 474..19 2280 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 12:07:12
Subject Length Description Subject Range Query Range Score Percent Strand
Trs33-RA 583 CG6196-RA 76..531 474..19 2280 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 12:07:03
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15350397..15350785 19..407 1945 100 Plus
3R 32079331 3R 15350851..15350920 405..474 350 100 Plus
Blast to na_te.dros performed on 2015-02-06 12:07:07 has no hits.

BO13827.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:13:13 Download gff for BO13827.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6196-PA 1..459 15..474 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:03:06 Download gff for BO13827.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6196-PA 1..459 15..474 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 06:57:34 Download gff for BO13827.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6196-RA 66..536 11..484 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:38:37 Download gff for BO13827.3prime
Subject Subject Range Query Range Percent Splice Strand
Trs33-RA 66..536 11..484 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:38:37 Download gff for BO13827.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 15350392..15350783 11..405 98 <- Plus
3R 15350852..15350930 406..484 95   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 06:57:34 Download gff for BO13827.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11176114..11176505 11..405 98 <- Plus
arm_3R 11176574..11176652 406..484 95   Plus

BO13827.5prime Sequence

488 bp (487 high quality bases) assembled on 2006-05-08

> BO13827.5prime
GAAGTTATCAGTCGACATGTCTGAAGAAATCCTTTTCGATTGCCTCCATG
CAGAGATAGTCAATTATTGTCTGGATAGCAATAAGGAGCACGACCTGGCC
ACTTTGGAGTATATAGGCTTCACCACCGGCTACCGCCTGATTGAGCGGCT
CACCCGTGAAGTTTCGCGTTTTAAGGACGAGTTGGAGACTATGAAGTTTA
TATGCACCGACTTCTGGATGCTTATATACAAGAAGCAAGTGGACAACCTG
AGGACGAACAACCACGGAATGTACGTTGTGCAGGACAAGGCTTTCCGCTT
TCTGACTCGCATCTCGCCGGGCACCAAGCAGCTGGAGCACGCGCCCAAGT
TCGTGGCCTTCACGTGCGGGCTGGTGCGAGGAGCTCTCAGCAATCTAGGC
ATTAACAGCACCGTGACGGCCGAAGTGCAAAGCATACCCGCCTGCAAGTT
TCACATAGAAGTGAACAGGAACGCAAGCTTTCTAGACC

BO13827.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:11:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG6196-PA 459 CG6196-RA 1..456 17..472 2280 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 09:30:06
Subject Length Description Subject Range Query Range Score Percent Strand
Trs33-RA 583 CG6196-RA 76..531 17..472 2280 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 09:29:59
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15350397..15350785 472..84 1945 100 Minus
3R 32079331 3R 15350851..15350920 86..17 350 100 Minus
Blast to na_te.dros performed on 2015-02-02 09:30:03 has no hits.

BO13827.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:13:14 Download gff for BO13827.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6196-PA 1..459 17..476 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:03:08 Download gff for BO13827.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6196-PA 1..459 17..476 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 03:54:20 Download gff for BO13827.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6196-RA 66..536 7..480 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:15:22 Download gff for BO13827.5prime
Subject Subject Range Query Range Percent Splice Strand
Trs33-RA 66..536 7..480 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 12:15:22 Download gff for BO13827.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 15350392..15350783 86..480 98 <- Minus
3R 15350852..15350930 7..85 95   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 03:54:20 Download gff for BO13827.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11176114..11176505 86..480 98 <- Minus
arm_3R 11176574..11176652 7..85 95   Minus

BO13827.complete Sequence

490 bp assembled on 2006-10-11

GenBank Submission: FJ632940

> BO13827.complete
GAAGTTATCAGTCGACATGTCTGAAGAAATCCTTTTCGATTGCCTCCATG
CAGAGATAGTCAATTATTGTCTGGATAGCAATAAGGAGCACGACCTGGCC
ACTTTGGAGTATATAGGCTTCACCACCGGCTACCGCCTGATTGAGCGGCT
CACCCGTGAAGTTTCGCGTTTTAAGGACGAGTTGGAGACTATGAAGTTTA
TATGCACCGACTTCTGGATGCTTATATACAAGAAGCAAGTGGACAACCTG
AGGACGAACAACCACGGAATGTACGTTGTGCAGGACAAGGCTTTCCGCTT
TCTGACTCGCATCTCGCCGGGCACCAAGCAGCTGGAGCACGCGCCCAAGT
TCGTGGCCTTCACGTGCGGGCTGGTGCGAGGAGCTCTCAGCAATCTAGGC
ATTAACAGCACCGTGACGGCCGAAGTGCAAAGCATACCCGCCTGCAAGTT
TCACATAGAAGTGAACAGGAACGCAAGCTTTCTAGACCAT

BO13827.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:43:32
Subject Length Description Subject Range Query Range Score Percent Strand
Trs33-RA 459 CG6196-PA 1..456 17..472 2280 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:43:33
Subject Length Description Subject Range Query Range Score Percent Strand
Trs33-RA 583 CG6196-RA 76..531 17..472 2280 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:43:29
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15350397..15350785 472..84 1945 100 Minus
3R 32079331 3R 15350851..15350920 86..17 350 100 Minus
Blast to na_te.dros performed on 2014-11-28 00:43:30 has no hits.

BO13827.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:44:45 Download gff for BO13827.complete
Subject Subject Range Query Range Percent Splice Strand
CG6196-RA 1..459 17..476 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:58:41 Download gff for BO13827.complete
Subject Subject Range Query Range Percent Splice Strand
CG6196-RA 90..560 7..480 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:30:19 Download gff for BO13827.complete
Subject Subject Range Query Range Percent Splice Strand
CG6196-RA 76..531 17..474 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:44:45 Download gff for BO13827.complete
Subject Subject Range Query Range Percent Splice Strand
CG6196-RA 90..560 7..480 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:36:52 Download gff for BO13827.complete
Subject Subject Range Query Range Percent Splice Strand
Trs33-RA 76..531 17..474 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:36:52 Download gff for BO13827.complete
Subject Subject Range Query Range Percent Splice Strand
3R 15350395..15350783 86..474 99 <- Minus
3R 15350852..15350920 17..85 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:30:19 Download gff for BO13827.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11176117..11176505 86..474 99 <- Minus
arm_3R 11176574..11176642 17..85 100   Minus

BO13827.pep Sequence

Translation from 16 to 490

> BO13827.pep
MSEEILFDCLHAEIVNYCLDSNKEHDLATLEYIGFTTGYRLIERLTREVS
RFKDELETMKFICTDFWMLIYKKQVDNLRTNNHGMYVVQDKAFRFLTRIS
PGTKQLEHAPKFVAFTCGLVRGALSNLGINSTVTAEVQSIPACKFHIEVN
RNASFLDH

BO13827.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:34:37
Subject Length Description Subject Range Query Range Score Percent Strand
Trs33-PA 152 CG6196-PA 1..152 1..152 800 100 Plus