Clone BO13828 Report

Search the DGRC for BO13828

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:138
Well:28
Vector:pDNR-Dual
Associated Gene/Transcriptste14-RA
Protein status:BO13828.pep: validated full length
Sequenced Size:931

Clone Sequence Records

BO13828.3prime Sequence

802 bp (647 high quality bases) assembled on 2006-05-08

> BO13828.3prime
ATGGTCTAGAAAGCTTGCATCGACCAGATAGCCCCGGATGAAGGGCAGGC
CCGTTGGCACCCGCTTTTGATAGCGCACATAGTCCGACTGGAAGAAGTTG
AGCAGGGAGTACTCCTCGACGTAGATGCGATCGTGGAAGAACAGCCAGCT
GACCAGTGTGTAAATGCATATGCAGATGGGATTCAATAGCACGATCTGGG
TTCCGATGGACCACCAGAACCAGCCGACATAAGACGGGTGGCGGCAGTAG
GCGTAGATCCCGCTTGTTATTAGCTTGTGTTCCGAGTGTTTCTCATTCTG
GACCAAGTGAGTGAAGCTCCGGCCAGCTGTGATGATGGCTGCCTTGCGAA
CCATCTCGCCCAGCAGGCACAGGACCACGCCCGCCACCCAAATGTATCCG
TATCTCTTGAACTGCGGCAGGTAGTACACCTCTAGTGAGAACTCGATCCA
ACTGGCTGCCGCCGCCAGTCCATAGTGCACAGAGTGGTTCAGCATAAAGG
AGTCGAGACTGAGAGTGCGCGGATTGGCAAAGGCGATAACGAGGAACTCC
GAGTAGTGGAAAAGGGACATGAAGCATCCGTAGGCGCCAAATTGCTGCCA
CTCGGTGGGAGCAAAGCAGATGACCAGCACACTCACGGCCATGGCAAAGC
CCAGGAAGGATGCCCTAATGGCCACCTGGTAGTCGTGGTTCCGCAGCACA
AACCGTATGATCATGTTAATAAGGGCGTAGTACAAAAATGGACCCCAGAG
GACGGCGCCCCACACCTGTGGCACCACTCCATAAAGATTCTGGGGCACCG
AG

BO13828.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:11:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG11268-PA 900 CG11268-RA 114..897 802..19 3920 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 18:52:34
Subject Length Description Subject Range Query Range Score Percent Strand
ste14-RB 1121 CG11268-RB 229..1012 802..19 3920 100 Minus
ste14-RA 1227 CG11268-RA 229..1012 802..19 3920 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 18:52:25
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 13018685..13019061 678..302 1885 100 Minus
3L 28110227 3L 13019187..13019472 304..19 1430 100 Minus
3L 28110227 3L 13018494..13018623 802..673 650 100 Minus
Blast to na_te.dros performed on 2015-02-02 18:52:30 has no hits.

BO13828.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:13:15 Download gff for BO13828.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11268-PA 114..900 18..802 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:03:09 Download gff for BO13828.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11268-PA 114..900 18..802 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 17:20:28 Download gff for BO13828.3prime
Subject Subject Range Query Range Percent Splice Strand
ste14-RA 229..1012 19..802 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 21:04:36 Download gff for BO13828.3prime
Subject Subject Range Query Range Percent Splice Strand
ste14-RA 229..1012 19..802 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 21:04:36 Download gff for BO13828.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 13019188..13019472 19..303 100   Minus
3L 13018494..13018620 676..802 100 -> Minus
3L 13018688..13019059 304..675 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 17:20:28 Download gff for BO13828.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 13011594..13011720 676..802 100 -> Minus
arm_3L 13011788..13012159 304..675 100 -> Minus
arm_3L 13012288..13012572 19..303 100   Minus

BO13828.5prime Sequence

730 bp (725 high quality bases) assembled on 2006-05-08

> BO13828.5prime
GAAGTTATCAGTCGACATGTGTGCAAAGAGCCGAGTGGCTTCTCCTGGGG
CCGGTGGCACCAGCCTGTGTTCCGAAGGCCGCATCAGTTTATATTGCTTT
CTGATTACTGCAGCTCTAGTCCTGATTCCCTCGGTGCCCCAGAATCTTTA
TGGAGTGGTGCCACAGGTGTGGGGCGCCGTCCTCTGGGGTCCATTTTTGT
ACTACGCCCTTATTAACATGATCATACGGTTTGTGCTGCGGAACCACGAC
TACCAGGTGGCCATTAGGGCATCCTTCCTGGGCTTTGCCATGGCCGTGAG
TGTGCTGGTCATCTGCTTTGCTCCCACCGAGTGGCAGCAATTTGGCGCCT
ACGGATGCTTCATGTCCCTTTTCCACTACTCGGAGTTCCTCGTTATCGCC
TTTGCCAATCCGCGCACTCTCAGTCTCGACTCCTTTATGCTGAACCACTC
TGTGCACTATGGACTGGCGGCGGCAGCCAGTTGGATCGAGTTCTCACTAG
AGGTGTACTACCTGCCGCAGTTCAAGAGATACGGATACATTTGGGTGGCG
GGCGTGGTCCTGTGCCTGCTGGGCGAGATGGTTCGCAAGGCAGCCATCAT
CACAGCTGGCCGGAGCTTCACTCACTTGGTCCAGAATGAGAAACACTCGG
AACACAAGCTAATAACAAGCGGGATCTACGCCTACTGCCGCCACCCGTCT
TATGTCGGCTGGTTCTGGTGGTCCATCGGA

BO13828.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:11:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG11268-PA 900 CG11268-RA 1..714 17..730 3570 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:25:59
Subject Length Description Subject Range Query Range Score Percent Strand
ste14-RB 1121 CG11268-RB 116..829 17..730 3570 100 Plus
ste14-RA 1227 CG11268-RA 116..829 17..730 3570 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:25:53
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 13018685..13019061 254..630 1885 100 Plus
3L 28110227 3L 13018381..13018623 17..259 1215 100 Plus
3L 28110227 3L 13019187..13019289 628..730 515 100 Plus
Blast to na_te.dros performed on 2015-02-10 22:25:56 has no hits.

BO13828.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:13:16 Download gff for BO13828.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11268-PA 1..713 17..729 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:03:11 Download gff for BO13828.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11268-PA 1..713 17..729 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 00:57:45 Download gff for BO13828.5prime
Subject Subject Range Query Range Percent Splice Strand
ste14-RA 111..828 9..729 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:56:37 Download gff for BO13828.5prime
Subject Subject Range Query Range Percent Splice Strand
ste14-RA 111..828 9..729 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:56:37 Download gff for BO13828.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 13018376..13018620 9..256 98 -> Plus
3L 13018688..13019059 257..628 100 -> Plus
3L 13019188..13019288 629..729 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 00:57:45 Download gff for BO13828.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 13011476..13011720 9..256 98 -> Plus
arm_3L 13011788..13012159 257..628 100 -> Plus
arm_3L 13012288..13012388 629..729 100   Plus

BO13828.complete Sequence

931 bp assembled on 2006-10-11

GenBank Submission: FJ632941

> BO13828.complete
GAAGTTATCAGTCGACATGTGTGCAAAGAGCCGAGTGGCTTCTCCTGGGG
CCGGTGGCACCAGCCTGTGTTCCGAAGGCCGCATCAGTTTATATTGCTTT
CTGATTACTGCAGCTCTAGTCCTGATTCCCTCGGTGCCCCAGAATCTTTA
TGGAGTGGTGCCACAGGTGTGGGGCGCCGTCCTCTGGGGTCCATTTTTGT
ACTACGCCCTTATTAACATGATCATACGGTTTGTGCTGCGGAACCACGAC
TACCAGGTGGCCATTAGGGCATCCTTCCTGGGCTTTGCCATGGCCGTGAG
TGTGCTGGTCATCTGCTTTGCTCCCACCGAGTGGCAGCAATTTGGCGCCT
ACGGATGCTTCATGTCCCTTTTCCACTACTCGGAGTTCCTCGTTATCGCC
TTTGCCAATCCGCGCACTCTCAGTCTCGACTCCTTTATGCTGAACCACTC
TGTGCACTATGGACTGGCGGCGGCAGCCAGTTGGATCGAGTTCTCACTAG
AGGTGTACTACCTGCCGCAGTTCAAGAGATACGGATACATTTGGGTGGCG
GGCGTGGTCCTGTGCCTGCTGGGCGAGATGGTTCGCAAGGCAGCCATCAT
CACAGCTGGCCGGAGCTTCACTCACTTGGTCCAGAATGAGAAACACTCGG
AACACAAGCTAATAACAAGCGGGATCTACGCCTACTGCCGCCACCCGTCT
TATGTCGGCTGGTTCTGGTGGTCCATCGGAACCCAGATCGTGCTATTGAA
TCCCATCTGCATATGCATTTACACACTGGTCAGCTGGCTGTTCTTCCACG
ATCGCATCTACGTCGAGGAGTACTCCCTGCTCAACTTCTTCCAGTCGGAC
TATGTGCGCTATCAAAAGCGGGTGCCAACGGGCCTGCCCTTCATCCGGGG
CTATCTGGTCGATGCAAGCTTTCTAGACCAT

BO13828.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:36:22
Subject Length Description Subject Range Query Range Score Percent Strand
ste14-RB 900 CG11268-PB 1..897 17..913 4485 100 Plus
ste14-RA 900 CG11268-PA 1..897 17..913 4485 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:36:23
Subject Length Description Subject Range Query Range Score Percent Strand
ste14-RB 1121 CG11268-RB 116..1012 17..913 4485 100 Plus
ste14-RA 1227 CG11268-RA 116..1012 17..913 4485 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:36:20
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 13018685..13019061 254..630 1885 100 Plus
3L 28110227 3L 13019187..13019472 628..913 1430 100 Plus
3L 28110227 3L 13018381..13018623 17..259 1215 100 Plus
Blast to na_te.dros performed on 2014-11-27 23:36:21 has no hits.

BO13828.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:44:48 Download gff for BO13828.complete
Subject Subject Range Query Range Percent Splice Strand
CG11268-RA 1..900 17..914 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:58:43 Download gff for BO13828.complete
Subject Subject Range Query Range Percent Splice Strand
CG11268-RA 126..1027 9..913 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:33:13 Download gff for BO13828.complete
Subject Subject Range Query Range Percent Splice Strand
ste14-RA 116..1012 17..915 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:44:48 Download gff for BO13828.complete
Subject Subject Range Query Range Percent Splice Strand
CG11268-RA 126..1027 9..913 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:04:25 Download gff for BO13828.complete
Subject Subject Range Query Range Percent Splice Strand
ste14-RA 116..1012 17..915 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:04:25 Download gff for BO13828.complete
Subject Subject Range Query Range Percent Splice Strand
3L 13018381..13018620 17..256 100 -> Plus
3L 13018688..13019059 257..628 100 -> Plus
3L 13019188..13019472 629..915 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:33:13 Download gff for BO13828.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 13011481..13011720 17..256 100 -> Plus
arm_3L 13011788..13012159 257..628 100 -> Plus
arm_3L 13012288..13012572 629..915 99   Plus

BO13828.pep Sequence

Translation from 16 to 931

> BO13828.pep
MCAKSRVASPGAGGTSLCSEGRISLYCFLITAALVLIPSVPQNLYGVVPQ
VWGAVLWGPFLYYALINMIIRFVLRNHDYQVAIRASFLGFAMAVSVLVIC
FAPTEWQQFGAYGCFMSLFHYSEFLVIAFANPRTLSLDSFMLNHSVHYGL
AAAASWIEFSLEVYYLPQFKRYGYIWVAGVVLCLLGEMVRKAAIITAGRS
FTHLVQNEKHSEHKLITSGIYAYCRHPSYVGWFWWSIGTQIVLLNPICIC
IYTLVSWLFFHDRIYVEEYSLLNFFQSDYVRYQKRVPTGLPFIRGYLVDA
SFLDH

BO13828.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:34:35
Subject Length Description Subject Range Query Range Score Percent Strand
ste14-PB 299 CG11268-PB 1..299 1..299 1603 100 Plus
ste14-PA 299 CG11268-PA 1..299 1..299 1603 100 Plus