Clone Sequence Records
BO13828.3prime Sequence
802 bp (647 high quality bases) assembled on 2006-05-08
> BO13828.3prime
ATGGTCTAGAAAGCTTGCATCGACCAGATAGCCCCGGATGAAGGGCAGGC
CCGTTGGCACCCGCTTTTGATAGCGCACATAGTCCGACTGGAAGAAGTTG
AGCAGGGAGTACTCCTCGACGTAGATGCGATCGTGGAAGAACAGCCAGCT
GACCAGTGTGTAAATGCATATGCAGATGGGATTCAATAGCACGATCTGGG
TTCCGATGGACCACCAGAACCAGCCGACATAAGACGGGTGGCGGCAGTAG
GCGTAGATCCCGCTTGTTATTAGCTTGTGTTCCGAGTGTTTCTCATTCTG
GACCAAGTGAGTGAAGCTCCGGCCAGCTGTGATGATGGCTGCCTTGCGAA
CCATCTCGCCCAGCAGGCACAGGACCACGCCCGCCACCCAAATGTATCCG
TATCTCTTGAACTGCGGCAGGTAGTACACCTCTAGTGAGAACTCGATCCA
ACTGGCTGCCGCCGCCAGTCCATAGTGCACAGAGTGGTTCAGCATAAAGG
AGTCGAGACTGAGAGTGCGCGGATTGGCAAAGGCGATAACGAGGAACTCC
GAGTAGTGGAAAAGGGACATGAAGCATCCGTAGGCGCCAAATTGCTGCCA
CTCGGTGGGAGCAAAGCAGATGACCAGCACACTCACGGCCATGGCAAAGC
CCAGGAAGGATGCCCTAATGGCCACCTGGTAGTCGTGGTTCCGCAGCACA
AACCGTATGATCATGTTAATAAGGGCGTAGTACAAAAATGGACCCCAGAG
GACGGCGCCCCACACCTGTGGCACCACTCCATAAAGATTCTGGGGCACCG
AG
BO13828.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:11:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11268-PA | 900 | CG11268-RA | 114..897 | 802..19 | 3920 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 18:52:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ste14-RB | 1121 | CG11268-RB | 229..1012 | 802..19 | 3920 | 100 | Minus |
ste14-RA | 1227 | CG11268-RA | 229..1012 | 802..19 | 3920 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 18:52:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 13018685..13019061 | 678..302 | 1885 | 100 | Minus |
3L | 28110227 | 3L | 13019187..13019472 | 304..19 | 1430 | 100 | Minus |
3L | 28110227 | 3L | 13018494..13018623 | 802..673 | 650 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-02 18:52:30 has no hits.
BO13828.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:13:15 Download gff for
BO13828.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11268-PA | 114..900 | 18..802 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:03:09 Download gff for
BO13828.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11268-PA | 114..900 | 18..802 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 17:20:28 Download gff for
BO13828.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ste14-RA | 229..1012 | 19..802 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 21:04:36 Download gff for
BO13828.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ste14-RA | 229..1012 | 19..802 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 21:04:36 Download gff for
BO13828.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 13019188..13019472 | 19..303 | 100 | | Minus |
3L | 13018494..13018620 | 676..802 | 100 | -> | Minus |
3L | 13018688..13019059 | 304..675 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 17:20:28 Download gff for
BO13828.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 13011594..13011720 | 676..802 | 100 | -> | Minus |
arm_3L | 13011788..13012159 | 304..675 | 100 | -> | Minus |
arm_3L | 13012288..13012572 | 19..303 | 100 | | Minus |
BO13828.5prime Sequence
730 bp (725 high quality bases) assembled on 2006-05-08
> BO13828.5prime
GAAGTTATCAGTCGACATGTGTGCAAAGAGCCGAGTGGCTTCTCCTGGGG
CCGGTGGCACCAGCCTGTGTTCCGAAGGCCGCATCAGTTTATATTGCTTT
CTGATTACTGCAGCTCTAGTCCTGATTCCCTCGGTGCCCCAGAATCTTTA
TGGAGTGGTGCCACAGGTGTGGGGCGCCGTCCTCTGGGGTCCATTTTTGT
ACTACGCCCTTATTAACATGATCATACGGTTTGTGCTGCGGAACCACGAC
TACCAGGTGGCCATTAGGGCATCCTTCCTGGGCTTTGCCATGGCCGTGAG
TGTGCTGGTCATCTGCTTTGCTCCCACCGAGTGGCAGCAATTTGGCGCCT
ACGGATGCTTCATGTCCCTTTTCCACTACTCGGAGTTCCTCGTTATCGCC
TTTGCCAATCCGCGCACTCTCAGTCTCGACTCCTTTATGCTGAACCACTC
TGTGCACTATGGACTGGCGGCGGCAGCCAGTTGGATCGAGTTCTCACTAG
AGGTGTACTACCTGCCGCAGTTCAAGAGATACGGATACATTTGGGTGGCG
GGCGTGGTCCTGTGCCTGCTGGGCGAGATGGTTCGCAAGGCAGCCATCAT
CACAGCTGGCCGGAGCTTCACTCACTTGGTCCAGAATGAGAAACACTCGG
AACACAAGCTAATAACAAGCGGGATCTACGCCTACTGCCGCCACCCGTCT
TATGTCGGCTGGTTCTGGTGGTCCATCGGA
BO13828.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:11:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11268-PA | 900 | CG11268-RA | 1..714 | 17..730 | 3570 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:25:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ste14-RB | 1121 | CG11268-RB | 116..829 | 17..730 | 3570 | 100 | Plus |
ste14-RA | 1227 | CG11268-RA | 116..829 | 17..730 | 3570 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:25:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 13018685..13019061 | 254..630 | 1885 | 100 | Plus |
3L | 28110227 | 3L | 13018381..13018623 | 17..259 | 1215 | 100 | Plus |
3L | 28110227 | 3L | 13019187..13019289 | 628..730 | 515 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 22:25:56 has no hits.
BO13828.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:13:16 Download gff for
BO13828.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11268-PA | 1..713 | 17..729 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:03:11 Download gff for
BO13828.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11268-PA | 1..713 | 17..729 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 00:57:45 Download gff for
BO13828.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ste14-RA | 111..828 | 9..729 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:56:37 Download gff for
BO13828.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ste14-RA | 111..828 | 9..729 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:56:37 Download gff for
BO13828.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 13018376..13018620 | 9..256 | 98 | -> | Plus |
3L | 13018688..13019059 | 257..628 | 100 | -> | Plus |
3L | 13019188..13019288 | 629..729 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 00:57:45 Download gff for
BO13828.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 13011476..13011720 | 9..256 | 98 | -> | Plus |
arm_3L | 13011788..13012159 | 257..628 | 100 | -> | Plus |
arm_3L | 13012288..13012388 | 629..729 | 100 | | Plus |
BO13828.complete Sequence
931 bp assembled on 2006-10-11
GenBank Submission: FJ632941
> BO13828.complete
GAAGTTATCAGTCGACATGTGTGCAAAGAGCCGAGTGGCTTCTCCTGGGG
CCGGTGGCACCAGCCTGTGTTCCGAAGGCCGCATCAGTTTATATTGCTTT
CTGATTACTGCAGCTCTAGTCCTGATTCCCTCGGTGCCCCAGAATCTTTA
TGGAGTGGTGCCACAGGTGTGGGGCGCCGTCCTCTGGGGTCCATTTTTGT
ACTACGCCCTTATTAACATGATCATACGGTTTGTGCTGCGGAACCACGAC
TACCAGGTGGCCATTAGGGCATCCTTCCTGGGCTTTGCCATGGCCGTGAG
TGTGCTGGTCATCTGCTTTGCTCCCACCGAGTGGCAGCAATTTGGCGCCT
ACGGATGCTTCATGTCCCTTTTCCACTACTCGGAGTTCCTCGTTATCGCC
TTTGCCAATCCGCGCACTCTCAGTCTCGACTCCTTTATGCTGAACCACTC
TGTGCACTATGGACTGGCGGCGGCAGCCAGTTGGATCGAGTTCTCACTAG
AGGTGTACTACCTGCCGCAGTTCAAGAGATACGGATACATTTGGGTGGCG
GGCGTGGTCCTGTGCCTGCTGGGCGAGATGGTTCGCAAGGCAGCCATCAT
CACAGCTGGCCGGAGCTTCACTCACTTGGTCCAGAATGAGAAACACTCGG
AACACAAGCTAATAACAAGCGGGATCTACGCCTACTGCCGCCACCCGTCT
TATGTCGGCTGGTTCTGGTGGTCCATCGGAACCCAGATCGTGCTATTGAA
TCCCATCTGCATATGCATTTACACACTGGTCAGCTGGCTGTTCTTCCACG
ATCGCATCTACGTCGAGGAGTACTCCCTGCTCAACTTCTTCCAGTCGGAC
TATGTGCGCTATCAAAAGCGGGTGCCAACGGGCCTGCCCTTCATCCGGGG
CTATCTGGTCGATGCAAGCTTTCTAGACCAT
BO13828.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:36:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ste14-RB | 900 | CG11268-PB | 1..897 | 17..913 | 4485 | 100 | Plus |
ste14-RA | 900 | CG11268-PA | 1..897 | 17..913 | 4485 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:36:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ste14-RB | 1121 | CG11268-RB | 116..1012 | 17..913 | 4485 | 100 | Plus |
ste14-RA | 1227 | CG11268-RA | 116..1012 | 17..913 | 4485 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:36:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 13018685..13019061 | 254..630 | 1885 | 100 | Plus |
3L | 28110227 | 3L | 13019187..13019472 | 628..913 | 1430 | 100 | Plus |
3L | 28110227 | 3L | 13018381..13018623 | 17..259 | 1215 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 23:36:21 has no hits.
BO13828.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:44:48 Download gff for
BO13828.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11268-RA | 1..900 | 17..914 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:58:43 Download gff for
BO13828.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11268-RA | 126..1027 | 9..913 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:33:13 Download gff for
BO13828.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ste14-RA | 116..1012 | 17..915 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:44:48 Download gff for
BO13828.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11268-RA | 126..1027 | 9..913 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:04:25 Download gff for
BO13828.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ste14-RA | 116..1012 | 17..915 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:04:25 Download gff for
BO13828.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 13018381..13018620 | 17..256 | 100 | -> | Plus |
3L | 13018688..13019059 | 257..628 | 100 | -> | Plus |
3L | 13019188..13019472 | 629..915 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:33:13 Download gff for
BO13828.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 13011481..13011720 | 17..256 | 100 | -> | Plus |
arm_3L | 13011788..13012159 | 257..628 | 100 | -> | Plus |
arm_3L | 13012288..13012572 | 629..915 | 99 | | Plus |
BO13828.pep Sequence
Translation from 16 to 931
> BO13828.pep
MCAKSRVASPGAGGTSLCSEGRISLYCFLITAALVLIPSVPQNLYGVVPQ
VWGAVLWGPFLYYALINMIIRFVLRNHDYQVAIRASFLGFAMAVSVLVIC
FAPTEWQQFGAYGCFMSLFHYSEFLVIAFANPRTLSLDSFMLNHSVHYGL
AAAASWIEFSLEVYYLPQFKRYGYIWVAGVVLCLLGEMVRKAAIITAGRS
FTHLVQNEKHSEHKLITSGIYAYCRHPSYVGWFWWSIGTQIVLLNPICIC
IYTLVSWLFFHDRIYVEEYSLLNFFQSDYVRYQKRVPTGLPFIRGYLVDA
SFLDH
BO13828.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:34:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ste14-PB | 299 | CG11268-PB | 1..299 | 1..299 | 1603 | 100 | Plus |
ste14-PA | 299 | CG11268-PA | 1..299 | 1..299 | 1603 | 100 | Plus |