Clone BO13829 Report

Search the DGRC for BO13829

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:138
Well:29
Vector:pDNR-Dual
Associated Gene/Transcript
Protein status:BO13829.pep: validated full length
Sequenced Size:628

Clone Sequence Records

BO13829.5prime Sequence

626 bp (625 high quality bases) assembled on 2006-05-08

> BO13829.5prime
GAAGTTATCAGTCGACATGTTCGTCTTACTCGGAGCACTCTGTCTGCTGC
AGACGGCTAGCTTGGTGCCGGCACAGCTGTTTACTTTCCGCGATGGCAAG
GTGGGCGTGAACTTCGCAGGATATCACGCAGATGCGGGACTCGGCGGACT
CCTTACGGGCAACTCTGCCCACGGCGGACTCAGCGCCTCGGCCGGAACAC
CTTGGGGCTCCCGGGCAGCCGCCGGTCTGGGCGGCAATCTGGATGGACGC
ACAGCCGGCGTGGGATACGCCGCCGCCCAGGCCAATCCCTCGGTGGGAGC
CAGTGCGCTTCTGGGCGGCAGCGCCGGTGAACATGGTTATATCGGAGCCG
AGGCGCACAGTCCTGGTCGCACTGTGATCTCCTCCTCGCAGCACTCAGTC
CAGCCGGCATATCCTGCTGATCCTGTGCCCGTCTCACCCACCACCGGCCC
CGTCGTCACCAGCCACATCCAAAAGGTCAAGCCGCCCAAGAAGTACTCGC
TGATCAACCAAGATGCAAGGAGCGAGGCCAAGGTGGTCCAGGCCCACAAG
TACAAGTCCGTCCAGCGACCCCAGGCCGTGAACAATCGCTTCCTGGCGCC
CCAGGCCCAAGCAAGCTTTCTAGACC

BO13829.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:11:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG9812-PB 597 CG9812-RB 1..594 17..610 2970 100 Plus
CG9812-PC 741 CG9812-RC 1..498 17..514 2490 100 Plus
CG9812-PC 741 CG9812-RC 643..738 515..610 480 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 23:40:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG9812-RE 1223 CG9812-RE 131..724 17..610 2970 100 Plus
CG9812-RB 1313 CG9812-RB 221..814 17..610 2970 100 Plus
CG9812-RD 1574 CG9812-RD 221..718 17..514 2490 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 23:40:26
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 23414492..23414766 519..245 1360 99.6 Minus
2R 25286936 2R 23414831..23415003 246..74 865 100 Minus
2R 25286936 2R 23413038..23413133 610..515 480 100 Minus
2R 25286936 2R 23419227..23419286 76..17 300 100 Minus
Blast to na_te.dros performed on 2015-02-09 23:40:29 has no hits.

BO13829.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:13:18 Download gff for BO13829.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9812-PB 1..597 17..613 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:03:14 Download gff for BO13829.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9812-PB 1..597 17..613 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:29:38 Download gff for BO13829.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9812-RB 217..814 9..610 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 00:57:12 Download gff for BO13829.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9812-RB 217..814 9..610 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 00:57:12 Download gff for BO13829.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 23413038..23413133 515..610 100 <- Minus
2R 23414497..23414765 246..514 100 <- Minus
2R 23414832..23415000 77..245 100 <- Minus
2R 23419227..23419290 9..76 94   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:29:38 Download gff for BO13829.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19300561..19300656 515..610 100 <- Minus
arm_2R 19302020..19302288 246..514 100 <- Minus
arm_2R 19302355..19302523 77..245 100 <- Minus
arm_2R 19306750..19306813 9..76 94   Minus

BO13829.3prime Sequence

588 bp (515 high quality bases) assembled on 2006-05-08

> BO13829.3prime
ATGGTCTAGAAAGCTTGCTTGGGCCTGGGGCGCCAGGAAGCGATTGTTCA
CGGCCTGGGGTCGCTGGACGGACTTGTACTTGTGGGCCTGGACCACCTTG
GCCTCGCTCCTTGCATCTTGGTTGATCAGCGAGTACTTCTTGGGCGGCTT
GACCTTTTGGATGTGGCTGGTGACGACGGGGCCGGTGGTGGGTGAGACGG
GCACAGGATCAGCAGGATATGCCGGCTGGACTGAGTGCTGCGAGGAGGAG
ATCACAGTGCGACCAGGACTGTGCGCCTCGGCTCCGATATAACCATGTTC
ACCGGCGCTGCCGCCCAGAAGCGCACTGGCTCCCACCGAGGGATTGGCCT
GGGCGGCGGCGTATCCCACGCCGGCTGTGCGTCCATCCAGATTGCCGCCC
AGACCGGCGGCTGCCCGGGAGCCCCAAGGTGTTCCGGCCGAGGCGCTGAG
TCCGCCGTGGGCAGAGTTGCCCGTAAGGAGTCCGCCGAGTCCCGCATCTG
CGTGATATCCTGCGAAGTTCACGCCCACCTTGCCATCGCGGAAAGTAAAC
AGCTGTGCCGGCACCAAGCTAGCCCGTCTGCAGCAGAC

BO13829.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:11:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG9812-PB 597 CG9812-RB 39..594 574..19 2780 100 Minus
CG9812-PC 741 CG9812-RC 39..498 574..115 2300 100 Minus
CG9812-PC 741 CG9812-RC 643..738 114..19 480 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:19:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG9812-RE 1223 CG9812-RE 156..724 588..19 2825 99.8 Minus
CG9812-RB 1313 CG9812-RB 246..814 588..19 2825 99.8 Minus
CG9812-RD 1574 CG9812-RD 246..718 588..115 2345 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 12:19:30
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 23414492..23414766 110..384 1360 99.6 Plus
2R 25286936 2R 23414831..23415003 383..555 865 100 Plus
2R 25286936 2R 23413038..23413133 19..114 480 100 Plus
Blast to na_te.dros performed on 2015-02-12 12:19:33 has no hits.

BO13829.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:13:17 Download gff for BO13829.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9812-PB 26..597 16..588 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:03:12 Download gff for BO13829.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9812-PB 26..597 16..588 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 01:13:30 Download gff for BO13829.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9812-RB 246..814 19..588 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:03:53 Download gff for BO13829.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9812-RB 246..814 19..588 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:03:53 Download gff for BO13829.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 23413038..23413133 19..114 100 <- Plus
2R 23414497..23414765 115..383 100 <- Plus
2R 23414832..23415000 384..552 100 <- Plus
2R 23419227..23419261 553..588 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 01:13:30 Download gff for BO13829.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19300561..19300656 19..114 100 <- Plus
arm_2R 19302020..19302288 115..383 100 <- Plus
arm_2R 19302355..19302523 384..552 100 <- Plus
arm_2R 19306750..19306784 553..588 97   Plus

BO13829.complete Sequence

628 bp assembled on 2006-10-11

GenBank Submission: FJ632942

> BO13829.complete
GAAGTTATCAGTCGACATGTTCGTCTTACTCGGAGCACTCTGTCTGCTGC
AGACGGCTAGCTTGGTGCCGGCACAGCTGTTTACTTTCCGCGATGGCAAG
GTGGGCGTGAACTTCGCAGGATATCACGCAGATGCGGGACTCGGCGGACT
CCTTACGGGCAACTCTGCCCACGGCGGACTCAGCGCCTCGGCCGGAACAC
CTTGGGGCTCCCGGGCAGCCGCCGGTCTGGGCGGCAATCTGGATGGACGC
ACAGCCGGCGTGGGATACGCCGCCGCCCAGGCCAATCCCTCGGTGGGAGC
CAGTGCGCTTCTGGGCGGCAGCGCCGGTGAACATGGTTATATCGGAGCCG
AGGCGCACAGTCCTGGTCGCACTGTGATCTCCTCCTCGCAGCACTCAGTC
CAGCCGGCATATCCTGCTGATCCTGTGCCCGTCTCACCCACCACCGGCCC
CGTCGTCACCAGCCACATCCAAAAGGTCAAGCCGCCCAAGAAGTACTCGC
TGATCAACCAAGATGCAAGGAGCGAGGCCAAGGTGGTCCAGGCCCACAAG
TACAAGTCCGTCCAGCGACCCCAGGCCGTGAACAATCGCTTCCTGGCGCC
CCAGGCCCAAGCAAGCTTTCTAGACCAT

BO13829.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:54:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG9812-RE 738 CG9812-PE 1..594 17..610 2970 100 Plus
CG9812-RB 738 CG9812-PB 1..594 17..610 2970 100 Plus
CG9812-RD 999 CG9812-PD 1..498 17..514 2490 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:54:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG9812-RE 1223 CG9812-RE 131..724 17..610 2970 100 Plus
CG9812-RB 1313 CG9812-RB 221..814 17..610 2970 100 Plus
CG9812-RD 1574 CG9812-RD 221..718 17..514 2490 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:53:58
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 23414492..23414766 519..245 1360 99.6 Minus
2R 25286936 2R 23414831..23415003 246..74 865 100 Minus
2R 25286936 2R 23413038..23413133 610..515 480 100 Minus
2R 25286936 2R 23419227..23419286 76..17 300 100 Minus
Blast to na_te.dros performed on 2014-11-28 00:53:59 has no hits.

BO13829.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:58:44 Download gff for BO13829.complete
Subject Subject Range Query Range Percent Splice Strand
CG9812-RB 1..594 17..610 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:30:47 Download gff for BO13829.complete
Subject Subject Range Query Range Percent Splice Strand
CG9812-RB 217..814 9..610 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:01:57 Download gff for BO13829.complete
Subject Subject Range Query Range Percent Splice Strand
CG9812-RB 226..814 22..612 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:58:44 Download gff for BO13829.complete
Subject Subject Range Query Range Percent Splice Strand
CG9812-RB 217..814 9..610 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:28:39 Download gff for BO13829.complete
Subject Subject Range Query Range Percent Splice Strand
CG9812-RB 226..814 22..612 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:28:39 Download gff for BO13829.complete
Subject Subject Range Query Range Percent Splice Strand
2R 23413034..23413133 515..612 98 <- Minus
2R 23414497..23414765 246..514 100 <- Minus
2R 23414832..23415000 77..245 100 <- Minus
2R 23419227..23419281 22..76 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:01:57 Download gff for BO13829.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19300557..19300656 515..612 98 <- Minus
arm_2R 19302020..19302288 246..514 100 <- Minus
arm_2R 19302355..19302523 77..245 100 <- Minus
arm_2R 19306750..19306804 22..76 100   Minus

BO13829.pep Sequence

Translation from 16 to 628

> BO13829.pep
MFVLLGALCLLQTASLVPAQLFTFRDGKVGVNFAGYHADAGLGGLLTGNS
AHGGLSASAGTPWGSRAAAGLGGNLDGRTAGVGYAAAQANPSVGASALLG
GSAGEHGYIGAEAHSPGRTVISSSQHSVQPAYPADPVPVSPTTGPVVTSH
IQKVKPPKKYSLINQDARSEAKVVQAHKYKSVQRPQAVNNRFLAPQAQAS
FLDH

BO13829.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:19:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG9812-PE 245 CG9812-PE 1..198 1..198 1018 100 Plus
CG9812-PB 245 CG9812-PB 1..198 1..198 1018 100 Plus
CG9812-PD 332 CG9812-PD 1..191 1..193 873 89.1 Plus