Clone Sequence Records
BO13829.5prime Sequence
626 bp (625 high quality bases) assembled on 2006-05-08
> BO13829.5prime
GAAGTTATCAGTCGACATGTTCGTCTTACTCGGAGCACTCTGTCTGCTGC
AGACGGCTAGCTTGGTGCCGGCACAGCTGTTTACTTTCCGCGATGGCAAG
GTGGGCGTGAACTTCGCAGGATATCACGCAGATGCGGGACTCGGCGGACT
CCTTACGGGCAACTCTGCCCACGGCGGACTCAGCGCCTCGGCCGGAACAC
CTTGGGGCTCCCGGGCAGCCGCCGGTCTGGGCGGCAATCTGGATGGACGC
ACAGCCGGCGTGGGATACGCCGCCGCCCAGGCCAATCCCTCGGTGGGAGC
CAGTGCGCTTCTGGGCGGCAGCGCCGGTGAACATGGTTATATCGGAGCCG
AGGCGCACAGTCCTGGTCGCACTGTGATCTCCTCCTCGCAGCACTCAGTC
CAGCCGGCATATCCTGCTGATCCTGTGCCCGTCTCACCCACCACCGGCCC
CGTCGTCACCAGCCACATCCAAAAGGTCAAGCCGCCCAAGAAGTACTCGC
TGATCAACCAAGATGCAAGGAGCGAGGCCAAGGTGGTCCAGGCCCACAAG
TACAAGTCCGTCCAGCGACCCCAGGCCGTGAACAATCGCTTCCTGGCGCC
CCAGGCCCAAGCAAGCTTTCTAGACC
BO13829.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:11:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9812-PB | 597 | CG9812-RB | 1..594 | 17..610 | 2970 | 100 | Plus |
CG9812-PC | 741 | CG9812-RC | 1..498 | 17..514 | 2490 | 100 | Plus |
CG9812-PC | 741 | CG9812-RC | 643..738 | 515..610 | 480 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 23:40:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9812-RE | 1223 | CG9812-RE | 131..724 | 17..610 | 2970 | 100 | Plus |
CG9812-RB | 1313 | CG9812-RB | 221..814 | 17..610 | 2970 | 100 | Plus |
CG9812-RD | 1574 | CG9812-RD | 221..718 | 17..514 | 2490 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 23:40:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 23414492..23414766 | 519..245 | 1360 | 99.6 | Minus |
2R | 25286936 | 2R | 23414831..23415003 | 246..74 | 865 | 100 | Minus |
2R | 25286936 | 2R | 23413038..23413133 | 610..515 | 480 | 100 | Minus |
2R | 25286936 | 2R | 23419227..23419286 | 76..17 | 300 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-09 23:40:29 has no hits.
BO13829.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:13:18 Download gff for
BO13829.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9812-PB | 1..597 | 17..613 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:03:14 Download gff for
BO13829.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9812-PB | 1..597 | 17..613 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:29:38 Download gff for
BO13829.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9812-RB | 217..814 | 9..610 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 00:57:12 Download gff for
BO13829.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9812-RB | 217..814 | 9..610 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 00:57:12 Download gff for
BO13829.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 23413038..23413133 | 515..610 | 100 | <- | Minus |
2R | 23414497..23414765 | 246..514 | 100 | <- | Minus |
2R | 23414832..23415000 | 77..245 | 100 | <- | Minus |
2R | 23419227..23419290 | 9..76 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:29:38 Download gff for
BO13829.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 19300561..19300656 | 515..610 | 100 | <- | Minus |
arm_2R | 19302020..19302288 | 246..514 | 100 | <- | Minus |
arm_2R | 19302355..19302523 | 77..245 | 100 | <- | Minus |
arm_2R | 19306750..19306813 | 9..76 | 94 | | Minus |
BO13829.3prime Sequence
588 bp (515 high quality bases) assembled on 2006-05-08
> BO13829.3prime
ATGGTCTAGAAAGCTTGCTTGGGCCTGGGGCGCCAGGAAGCGATTGTTCA
CGGCCTGGGGTCGCTGGACGGACTTGTACTTGTGGGCCTGGACCACCTTG
GCCTCGCTCCTTGCATCTTGGTTGATCAGCGAGTACTTCTTGGGCGGCTT
GACCTTTTGGATGTGGCTGGTGACGACGGGGCCGGTGGTGGGTGAGACGG
GCACAGGATCAGCAGGATATGCCGGCTGGACTGAGTGCTGCGAGGAGGAG
ATCACAGTGCGACCAGGACTGTGCGCCTCGGCTCCGATATAACCATGTTC
ACCGGCGCTGCCGCCCAGAAGCGCACTGGCTCCCACCGAGGGATTGGCCT
GGGCGGCGGCGTATCCCACGCCGGCTGTGCGTCCATCCAGATTGCCGCCC
AGACCGGCGGCTGCCCGGGAGCCCCAAGGTGTTCCGGCCGAGGCGCTGAG
TCCGCCGTGGGCAGAGTTGCCCGTAAGGAGTCCGCCGAGTCCCGCATCTG
CGTGATATCCTGCGAAGTTCACGCCCACCTTGCCATCGCGGAAAGTAAAC
AGCTGTGCCGGCACCAAGCTAGCCCGTCTGCAGCAGAC
BO13829.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:11:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9812-PB | 597 | CG9812-RB | 39..594 | 574..19 | 2780 | 100 | Minus |
CG9812-PC | 741 | CG9812-RC | 39..498 | 574..115 | 2300 | 100 | Minus |
CG9812-PC | 741 | CG9812-RC | 643..738 | 114..19 | 480 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:19:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9812-RE | 1223 | CG9812-RE | 156..724 | 588..19 | 2825 | 99.8 | Minus |
CG9812-RB | 1313 | CG9812-RB | 246..814 | 588..19 | 2825 | 99.8 | Minus |
CG9812-RD | 1574 | CG9812-RD | 246..718 | 588..115 | 2345 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 12:19:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 23414492..23414766 | 110..384 | 1360 | 99.6 | Plus |
2R | 25286936 | 2R | 23414831..23415003 | 383..555 | 865 | 100 | Plus |
2R | 25286936 | 2R | 23413038..23413133 | 19..114 | 480 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 12:19:33 has no hits.
BO13829.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:13:17 Download gff for
BO13829.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9812-PB | 26..597 | 16..588 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:03:12 Download gff for
BO13829.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9812-PB | 26..597 | 16..588 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 01:13:30 Download gff for
BO13829.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9812-RB | 246..814 | 19..588 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:03:53 Download gff for
BO13829.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9812-RB | 246..814 | 19..588 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:03:53 Download gff for
BO13829.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 23413038..23413133 | 19..114 | 100 | <- | Plus |
2R | 23414497..23414765 | 115..383 | 100 | <- | Plus |
2R | 23414832..23415000 | 384..552 | 100 | <- | Plus |
2R | 23419227..23419261 | 553..588 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 01:13:30 Download gff for
BO13829.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 19300561..19300656 | 19..114 | 100 | <- | Plus |
arm_2R | 19302020..19302288 | 115..383 | 100 | <- | Plus |
arm_2R | 19302355..19302523 | 384..552 | 100 | <- | Plus |
arm_2R | 19306750..19306784 | 553..588 | 97 | | Plus |
BO13829.complete Sequence
628 bp assembled on 2006-10-11
GenBank Submission: FJ632942
> BO13829.complete
GAAGTTATCAGTCGACATGTTCGTCTTACTCGGAGCACTCTGTCTGCTGC
AGACGGCTAGCTTGGTGCCGGCACAGCTGTTTACTTTCCGCGATGGCAAG
GTGGGCGTGAACTTCGCAGGATATCACGCAGATGCGGGACTCGGCGGACT
CCTTACGGGCAACTCTGCCCACGGCGGACTCAGCGCCTCGGCCGGAACAC
CTTGGGGCTCCCGGGCAGCCGCCGGTCTGGGCGGCAATCTGGATGGACGC
ACAGCCGGCGTGGGATACGCCGCCGCCCAGGCCAATCCCTCGGTGGGAGC
CAGTGCGCTTCTGGGCGGCAGCGCCGGTGAACATGGTTATATCGGAGCCG
AGGCGCACAGTCCTGGTCGCACTGTGATCTCCTCCTCGCAGCACTCAGTC
CAGCCGGCATATCCTGCTGATCCTGTGCCCGTCTCACCCACCACCGGCCC
CGTCGTCACCAGCCACATCCAAAAGGTCAAGCCGCCCAAGAAGTACTCGC
TGATCAACCAAGATGCAAGGAGCGAGGCCAAGGTGGTCCAGGCCCACAAG
TACAAGTCCGTCCAGCGACCCCAGGCCGTGAACAATCGCTTCCTGGCGCC
CCAGGCCCAAGCAAGCTTTCTAGACCAT
BO13829.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:54:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9812-RE | 738 | CG9812-PE | 1..594 | 17..610 | 2970 | 100 | Plus |
CG9812-RB | 738 | CG9812-PB | 1..594 | 17..610 | 2970 | 100 | Plus |
CG9812-RD | 999 | CG9812-PD | 1..498 | 17..514 | 2490 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:54:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9812-RE | 1223 | CG9812-RE | 131..724 | 17..610 | 2970 | 100 | Plus |
CG9812-RB | 1313 | CG9812-RB | 221..814 | 17..610 | 2970 | 100 | Plus |
CG9812-RD | 1574 | CG9812-RD | 221..718 | 17..514 | 2490 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:53:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 23414492..23414766 | 519..245 | 1360 | 99.6 | Minus |
2R | 25286936 | 2R | 23414831..23415003 | 246..74 | 865 | 100 | Minus |
2R | 25286936 | 2R | 23413038..23413133 | 610..515 | 480 | 100 | Minus |
2R | 25286936 | 2R | 23419227..23419286 | 76..17 | 300 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:53:59 has no hits.
BO13829.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:58:44 Download gff for
BO13829.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9812-RB | 1..594 | 17..610 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:30:47 Download gff for
BO13829.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9812-RB | 217..814 | 9..610 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:01:57 Download gff for
BO13829.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9812-RB | 226..814 | 22..612 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:58:44 Download gff for
BO13829.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9812-RB | 217..814 | 9..610 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:28:39 Download gff for
BO13829.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9812-RB | 226..814 | 22..612 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:28:39 Download gff for
BO13829.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 23413034..23413133 | 515..612 | 98 | <- | Minus |
2R | 23414497..23414765 | 246..514 | 100 | <- | Minus |
2R | 23414832..23415000 | 77..245 | 100 | <- | Minus |
2R | 23419227..23419281 | 22..76 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:01:57 Download gff for
BO13829.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 19300557..19300656 | 515..612 | 98 | <- | Minus |
arm_2R | 19302020..19302288 | 246..514 | 100 | <- | Minus |
arm_2R | 19302355..19302523 | 77..245 | 100 | <- | Minus |
arm_2R | 19306750..19306804 | 22..76 | 100 | | Minus |
BO13829.pep Sequence
Translation from 16 to 628
> BO13829.pep
MFVLLGALCLLQTASLVPAQLFTFRDGKVGVNFAGYHADAGLGGLLTGNS
AHGGLSASAGTPWGSRAAAGLGGNLDGRTAGVGYAAAQANPSVGASALLG
GSAGEHGYIGAEAHSPGRTVISSSQHSVQPAYPADPVPVSPTTGPVVTSH
IQKVKPPKKYSLINQDARSEAKVVQAHKYKSVQRPQAVNNRFLAPQAQAS
FLDH
BO13829.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:19:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9812-PE | 245 | CG9812-PE | 1..198 | 1..198 | 1018 | 100 | Plus |
CG9812-PB | 245 | CG9812-PB | 1..198 | 1..198 | 1018 | 100 | Plus |
CG9812-PD | 332 | CG9812-PD | 1..191 | 1..193 | 873 | 89.1 | Plus |