Clone BO13833 Report

Search the DGRC for BO13833

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:138
Well:33
Vector:pDNR-Dual
Associated Gene/TranscriptCG5612-RA
Protein status:BO13833.pep: validated full length
Sequenced Size:1318

Clone Sequence Records

BO13833.3prime Sequence

814 bp (765 high quality bases) assembled on 2006-05-08

> BO13833.3prime
ATGGTCTAGAAAGCTTGCGTTATGCAGGATCAGGAAGAGCAGGCCCAGCA
GCGCCGCCATTCCCATGCCCTGGTTCATCTGGCGCAGTGCCGAATTCTTC
TCACTCTCACCCTCACTCTCATCCTCGATCCGCTCGAACATCATCTCCTC
CGGCCGAATGCTCCGCTGCTCCTCGTGCTCCACGCTATCATTGTACACTC
CTGGCGGCGGGGTGGTCCGCTGGCCGGTCAGCAGGAGCAGCTGCAGCGTC
TGCAGCGGCGTCAGGTGCGGAGTGGCATTGCTTTTGGTCCGCGACTCCAG
AATTGCCTTTTGCCACAGCGGCGGCGGCAGGAAGGGCTCATAGGTGGGCG
GCGCTGTGCGCCCCCGATATCCGTAGACGTACATCTGGACAAAAAGGCTT
TTCGAATCGTAGTCGGTGATGACCGCCTTTAGGGTGCCACTCGTATAGTG
ACTGTACTCTGCCACCGGCGCTTGGTATTCGGCCTCCGAGATATTTCTAT
TGGCATAGTGATCGAGTATAGCAAACCGCACGTATGTTATTAGATTATTG
TCGATGTAGTAGAAAACCACCGAGTGATTGGTTGGCTTTTCCGAATCATC
CGGCGATGTCTGATAGCAATCATAGAGAAGTTCATCGCCCGCCTGCCTTT
TTCCAACTTCAATGTATTTGTCTGGCTTATCGAAATAGTCTGTTACGAAT
GGACCTTCCGTATAGCTCTCGATGTCCTCCTCGGACAGATTGTCATCACC
TTCGTCGATCTCCAGGTCATCGCGTCTATTGTTGTCAAATACCTCAACAT
ATTGATCCGGGTTC

BO13833.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:11:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG5612-PA 1287 CG5612-RA 493..1284 810..19 3960 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 18:54:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG5612-RA 1507 CG5612-RA 590..1381 810..19 3960 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 18:54:14
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 27623485..27623976 19..510 2460 100 Plus
3R 32079331 3R 27624230..27624402 638..810 865 100 Plus
3R 32079331 3R 27624046..27624174 511..639 645 100 Plus
Blast to na_te.dros performed on 2015-02-02 18:54:18 has no hits.

BO13833.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:13:20 Download gff for BO13833.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5612-PA 490..1287 18..814 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:03:15 Download gff for BO13833.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5612-PA 490..1287 18..814 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 17:20:32 Download gff for BO13833.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5612-RA 587..1381 19..814 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 21:04:49 Download gff for BO13833.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5612-RA 587..1381 19..814 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 21:04:49 Download gff for BO13833.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 27623485..27623976 19..510 100 <- Plus
3R 27624046..27624173 511..638 100 <- Plus
3R 27624231..27624405 639..814 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 17:20:32 Download gff for BO13833.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 23449768..23449895 511..638 100 <- Plus
arm_3R 23449953..23450127 639..814 99   Plus
arm_3R 23449207..23449698 19..510 100 <- Plus

BO13833.5prime Sequence

843 bp (745 high quality bases) assembled on 2006-05-08

> BO13833.5prime
GAAGTTATCAGTCGACATGGCATTTAACATGTGTGCAAATTCGCTTTGCT
TGGGCCTAGTTGCCCTTCTGGTTTTGGCCAAAAGTAGCGACGCCTTGCAG
GCAAAACGTTTCTTCGGTGTGGGCGAAAGGGTGGAAGGGGACCAGCTCCT
GGTCAAGGATGTGCTCCATTCCCGTCCAGCCGGCGCCGGCGAGCTGCCCG
GAGTGACGTTCACCTACGAGATTTTGGAGCCAATCACTTGCGTGGAAATT
CTATCGGAGGAAAACATTTCGGCGGAGGTGAAATTCAGCTTGGTGAATCG
CCTCATCGTGGGCATAATCCAATTGGCTGCCAGCAATCAAAGCGTTAACC
CATCAGCTCCCATTGTTCCACCAACCGTCGAGTTCGATGTGACCATCATG
GTGTTTGGCCTAAATGAGACCTCCAAGCATTTCGATCCCTCACTGGTCAT
CAATCGTGATCAGCAATTTGAGGGCGAGATGGAGCCCTACGAGGAAATCT
TCCCGGAACCGGATCAATATGTTGAGGTATTTGACAACAATAGACGCGAT
GACCTGGAGATCGACGAAGGTGATGACAATCTGTCCGAGGAGGACATCGA
GAGCTATACGGAAGGTCCATTCGTAACAGACTATTTCGATAAGCCAGACA
AATACATTGAAGTTGGAAAAAGGCAGGCGGGCGATGAACTTCTCTATGAT
TGCTATCAGACATCGCCGGATGATTCGGAAAAGCCAACCAATCACTCGGT
GGTTTTCTACTACATCGACAATAATCTAATAACATACGTGCGGTTTGCTA
TACTCGATCACTATGCCAATAGAAATATCTCGGAAGCCGAATA

BO13833.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:11:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG5612-PA 1287 CG5612-RA 1..827 17..843 4110 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:35:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG5612-RA 1507 CG5612-RA 98..924 17..843 4120 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:35:39
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 27624230..27624648 681..263 2095 100 Minus
3R 32079331 3R 27625669..27625914 262..17 1230 100 Minus
3R 32079331 3R 27624046..27624174 808..680 645 100 Minus
Blast to na_te.dros performed on 2015-02-10 20:35:40 has no hits.

BO13833.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:13:21 Download gff for BO13833.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5612-PA 1..826 17..842 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:03:17 Download gff for BO13833.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5612-PA 1..826 17..842 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:41:15 Download gff for BO13833.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5612-RA 92..923 12..842 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:55:52 Download gff for BO13833.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5612-RA 92..923 12..842 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 22:55:52 Download gff for BO13833.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 27625669..27625920 12..262 99   Minus
3R 27623943..27623976 809..842 97 <- Minus
3R 27624046..27624173 681..808 100 <- Minus
3R 27624231..27624648 263..680 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:41:15 Download gff for BO13833.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 23449665..23449698 809..842 97 <- Minus
arm_3R 23449768..23449895 681..808 100 <- Minus
arm_3R 23449953..23450370 263..680 100 <- Minus
arm_3R 23451391..23451642 12..262 99   Minus

BO13833.complete Sequence

1318 bp assembled on 2006-10-11

GenBank Submission: FJ632943

> BO13833.complete
GAAGTTATCAGTCGACATGGCATTTAACATGTGTGCAAATTCGCTTTGCT
TGGGCCTAGTTGCCCTTCTGGTTTTGGCCAAAAGTAGCGACGCCTTGCAG
GCAAAACGTTTCTTCGGTGTGGGCGAAAGGGTGGAAGGGGACCAGCTCCT
GGTCAAGGATGTGCTCCATTCCCGTCCAGCCGGCGCCGGCGAGCTGCCCG
GAGTGACGTTCACCTACGAGATTTTGGAGCCAATCACTTGCGTGGAAATT
CTATCGGAGGAAAACATTTCGGCGGAGGTGAAATTCAGCTTGGTGAATCG
CCTCATCGTGGGCATAATCCAATTGGCTGCCAGCAATCAAAGCGTTAACC
CATCAGCTCCCATTGTTCCACCAACCGTCGAGTTCGATGTGACCATCATG
GTGTTTGGCCTAAATGAGACCTCCAAGCATTTCGATCCCTCACTGGTCAT
CAATCGTGATCAGCAATTTGAGGGCGAGATGGAGCCCTACGAGGAAATCT
TCCCGGAACCGGATCAATATGTTGAGGTATTTGACAACAATAGACGCGAT
GACCTGGAGATCGACGAAGGTGATGACAATCTGTCCGAGGAGGACATCGA
GAGCTATACGGAAGGTCCATTCGTAACAGACTATTTCGATAAGCCAGACA
AATACATTGAAGTTGGAAAAAGGCAGGCGGGCGATGAACTTCTCTATGAT
TGCTATCAGACATCGCCGGATGATTCGGAAAAGCCAACCAATCACTCGGT
GGTTTTCTACTACATCGACAATAATCTAATAACATACGTGCGGTTTGCTA
TACTCGATCACTATGCCAATAGAAATATCTCGGAGGCCGAATACCAAGCG
CCGGTGGCAGAGTACAGTCACTATACGAGTGGCACCCTAAAGGCGGTCAT
CACCGACTACGATTCGAAAAGCCTTTTTGTCCAGATGTACGTCTACGGAT
ATCGGGGGCGCACAGCGCCGCCCACCTATGAGCCCTTCCTGCCGCCGCCG
CTGTGGCAAAAGGCAATTCTGGAGTCGCGGACCAAAAGCAATGCCACTCC
GCACCTGACGCCGCTGCAGACGCTGCAGCTGCTCCTGCTGACCGGCCAGC
GGACCACCCCGCCGCCAGGAGTGTACAATGATAGCGTGGAGCACGAGGAG
CAGCGGAGCATTCGGCCGGAGGAGATGATGTTCGAGCGGATCGAGGATGA
GAGTGAGGGTGAGAGTGAGAAGAATTCGGCACTGCGCCAGATGAACCAGG
GCATGGGAATGGCGGCGCTGCTGGGCCTGCTCTTCCTGATCCTGCATAAC
GCAAGCTTTCTAGACCAT

BO13833.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:39:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG5612-RA 1287 CG5612-PA 1..1284 17..1300 6420 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:39:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG5612-RA 1507 CG5612-RA 98..1381 17..1300 6420 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:39:44
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 27623485..27623976 1300..809 2460 100 Minus
3R 32079331 3R 27624230..27624648 681..263 2095 100 Minus
3R 32079331 3R 27625669..27625914 262..17 1230 100 Minus
3R 32079331 3R 27624046..27624174 808..680 645 100 Minus
Blast to na_te.dros performed on 2014-11-27 10:39:45 has no hits.

BO13833.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:24:04 Download gff for BO13833.complete
Subject Subject Range Query Range Percent Splice Strand
CG5612-RA 1..1287 17..1301 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:58:11 Download gff for BO13833.complete
Subject Subject Range Query Range Percent Splice Strand
CG5612-RA 90..1379 12..1300 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:40:42 Download gff for BO13833.complete
Subject Subject Range Query Range Percent Splice Strand
CG5612-RA 98..1381 17..1302 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:24:04 Download gff for BO13833.complete
Subject Subject Range Query Range Percent Splice Strand
CG5612-RA 90..1379 12..1300 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:27:38 Download gff for BO13833.complete
Subject Subject Range Query Range Percent Splice Strand
CG5612-RA 98..1381 17..1302 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:27:38 Download gff for BO13833.complete
Subject Subject Range Query Range Percent Splice Strand
3R 27623483..27623976 809..1302 99 <- Minus
3R 27624046..27624173 681..808 100 <- Minus
3R 27624231..27624648 263..680 100 <- Minus
3R 27625669..27625914 17..262 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:40:42 Download gff for BO13833.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 23449205..23449698 809..1302 99 <- Minus
arm_3R 23449768..23449895 681..808 100 <- Minus
arm_3R 23449953..23450370 263..680 100 <- Minus
arm_3R 23451391..23451636 17..262 100   Minus

BO13833.pep Sequence

Translation from 16 to 1318

> BO13833.pep
MAFNMCANSLCLGLVALLVLAKSSDALQAKRFFGVGERVEGDQLLVKDVL
HSRPAGAGELPGVTFTYEILEPITCVEILSEENISAEVKFSLVNRLIVGI
IQLAASNQSVNPSAPIVPPTVEFDVTIMVFGLNETSKHFDPSLVINRDQQ
FEGEMEPYEEIFPEPDQYVEVFDNNRRDDLEIDEGDDNLSEEDIESYTEG
PFVTDYFDKPDKYIEVGKRQAGDELLYDCYQTSPDDSEKPTNHSVVFYYI
DNNLITYVRFAILDHYANRNISEAEYQAPVAEYSHYTSGTLKAVITDYDS
KSLFVQMYVYGYRGRTAPPTYEPFLPPPLWQKAILESRTKSNATPHLTPL
QTLQLLLLTGQRTTPPPGVYNDSVEHEEQRSIRPEEMMFERIEDESEGES
EKNSALRQMNQGMGMAALLGLLFLILHNASFLDH

BO13833.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:40:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG5612-PA 428 CG5612-PA 1..428 1..428 2224 100 Plus