Clone Sequence Records
BO13834.3prime Sequence
395 bp (394 high quality bases) assembled on 2006-05-08
> BO13834.3prime
ATGGTCTAGAAAGCTTGCCATTCCATTCGCCTGGCTCATTTGGTGGTGAA
TGAATGACATGGTGTATCCAATCGAACGCCTAACGCAGTGCACGTCCATC
TGGCCATCCAAGATGCACTGCCTCAACTGATTGACGGCGTAGTTCTCGAT
CCGTTTCTTGGTACTCTCGTTGTCAATTCGTTCCAGTCGCTTATCCACCT
TGTGCATTAGAATGAATGCCTCTGGGAAGTGACCCACATCACAGGGCCAG
TTGACAGAGTGCGGATGCGGGTGGCTTAGACTTGGACCTTGGGACGAGTT
GTCCTCCTCAGACCAACGAATATTCCTGGCCTGCACCAAAGCCAGAGCCG
AAAGAAGTAGAATCACCAGAGTTGAGTTCATGTCGACTGATAACT
BO13834.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:11:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17820-PA | 366 | fit-RA | 1..363 | 381..19 | 1815 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 18:50:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
fit-RA | 531 | CG17820-RA | 24..386 | 381..19 | 1815 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 18:50:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 21884069..21884431 | 19..381 | 1815 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-02 18:50:39 has no hits.
BO13834.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:13:22 Download gff for
BO13834.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
fit-PA | 1..366 | 15..381 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:03:18 Download gff for
BO13834.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17820-PA | 1..366 | 15..381 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 17:20:25 Download gff for
BO13834.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
fit-RA | 11..392 | 12..395 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 21:04:25 Download gff for
BO13834.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
fit-RA | 11..392 | 12..395 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 21:04:25 Download gff for
BO13834.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 21884063..21884444 | 12..395 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 17:20:25 Download gff for
BO13834.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 17709785..17710166 | 12..395 | 98 | | Plus |
BO13834.5prime Sequence
395 bp (394 high quality bases) assembled on 2006-05-08
> BO13834.5prime
GAAGTTATCAGTCGACATGAACTCAACTCTGGTGATTCTACTTCTTTCGG
CTCTGGCTTTGGTGCAGGCCAGGAATATTCGTTGGTCTGAGGAGGACAAC
TCGTCCCAAGGTCCAAGTCTAAGCCACCCGCATCCGCACTCTGTCAACTG
GCCCTGTGATGTGGGTCACTTCCCAGAGGCATTCATTCTAATGCACAAGG
TGGATAAGCGACTGGAACGAATTGACAACGAGAGTACCAAGAAACGGATC
GAGAACTACGCCGTCAATCAGTTGAGGCAGTGCATCTTGGATGGCCAGAT
GGACGTGCACTGCGTTAGGCGTTCGATTGGATACACCATGTCATTCATTC
ACCACCAAATGAGCCAGGCGAATGGAATGGCAAGCTTTCTAGACC
BO13834.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:11:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17820-PA | 366 | fit-RA | 1..363 | 17..379 | 1815 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 02:50:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
fit-RA | 531 | CG17820-RA | 24..386 | 17..379 | 1815 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 02:50:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 21884069..21884431 | 379..17 | 1815 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-04 02:50:20 has no hits.
BO13834.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:13:23 Download gff for
BO13834.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
fit-PA | 1..366 | 17..383 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:03:19 Download gff for
BO13834.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17820-PA | 1..366 | 17..383 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 20:48:24 Download gff for
BO13834.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
fit-RA | 11..392 | 3..386 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:24:50 Download gff for
BO13834.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
fit-RA | 11..392 | 3..386 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:24:50 Download gff for
BO13834.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 21884063..21884444 | 3..386 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 20:48:24 Download gff for
BO13834.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 17709785..17710166 | 3..386 | 98 | | Minus |
BO13834.complete Sequence
397 bp assembled on 2006-10-11
GenBank Submission: FJ632944
> BO13834.complete
GAAGTTATCAGTCGACATGAACTCAACTCTGGTGATTCTACTTCTTTCGG
CTCTGGCTTTGGTGCAGGCCAGGAATATTCGTTGGTCTGAGGAGGACAAC
TCGTCCCAAGGTCCAAGTCTAAGCCACCCGCATCCGCACTCTGTCAACTG
GCCCTGTGATGTGGGTCACTTCCCAGAGGCATTCATTCTAATGCACAAGG
TGGATAAGCGACTGGAACGAATTGACAACGAGAGTACCAAGAAACGGATC
GAGAACTACGCCGTCAATCAGTTGAGGCAGTGCATCTTGGATGGCCAGAT
GGACGTGCACTGCGTTAGGCGTTCGATTGGATACACCATGTCATTCATTC
ACCACCAAATGAGCCAGGCGAATGGAATGGCAAGCTTTCTAGACCAT
BO13834.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:22:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
fit-RA | 366 | CG17820-PA | 1..363 | 17..379 | 1815 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:22:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
fit-RA | 531 | CG17820-RA | 24..386 | 17..379 | 1815 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:22:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 21884069..21884431 | 379..17 | 1815 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 15:22:04 has no hits.
BO13834.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:06:46 Download gff for
BO13834.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
fit-RA | 1..366 | 17..383 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:22:27 Download gff for
BO13834.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
fit-RA | 11..392 | 3..386 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:40:07 Download gff for
BO13834.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
fit-RA | 24..386 | 17..381 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:06:46 Download gff for
BO13834.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
fit-RA | 11..392 | 3..386 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:06:02 Download gff for
BO13834.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
fit-RA | 24..386 | 17..381 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:06:02 Download gff for
BO13834.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 21884067..21884431 | 17..381 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:40:07 Download gff for
BO13834.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 17709789..17710153 | 17..381 | 99 | | Minus |
BO13834.pep Sequence
Translation from 16 to 397
> BO13834.pep
MNSTLVILLLSALALVQARNIRWSEEDNSSQGPSLSHPHPHSVNWPCDVG
HFPEAFILMHKVDKRLERIDNESTKKRIENYAVNQLRQCILDGQMDVHCV
RRSIGYTMSFIHHQMSQANGMASFLDH
BO13834.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:02:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
fit-PA | 121 | CG17820-PA | 1..121 | 1..121 | 644 | 100 | Plus |