Clone BO13834 Report

Search the DGRC for BO13834

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:138
Well:34
Vector:pDNR-Dual
Associated Gene/Transcriptfit-RA
Protein status:BO13834.pep: validated full length
Sequenced Size:397

Clone Sequence Records

BO13834.3prime Sequence

395 bp (394 high quality bases) assembled on 2006-05-08

> BO13834.3prime
ATGGTCTAGAAAGCTTGCCATTCCATTCGCCTGGCTCATTTGGTGGTGAA
TGAATGACATGGTGTATCCAATCGAACGCCTAACGCAGTGCACGTCCATC
TGGCCATCCAAGATGCACTGCCTCAACTGATTGACGGCGTAGTTCTCGAT
CCGTTTCTTGGTACTCTCGTTGTCAATTCGTTCCAGTCGCTTATCCACCT
TGTGCATTAGAATGAATGCCTCTGGGAAGTGACCCACATCACAGGGCCAG
TTGACAGAGTGCGGATGCGGGTGGCTTAGACTTGGACCTTGGGACGAGTT
GTCCTCCTCAGACCAACGAATATTCCTGGCCTGCACCAAAGCCAGAGCCG
AAAGAAGTAGAATCACCAGAGTTGAGTTCATGTCGACTGATAACT

BO13834.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:11:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG17820-PA 366 fit-RA 1..363 381..19 1815 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 18:50:44
Subject Length Description Subject Range Query Range Score Percent Strand
fit-RA 531 CG17820-RA 24..386 381..19 1815 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 18:50:35
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 21884069..21884431 19..381 1815 100 Plus
Blast to na_te.dros performed on 2015-02-02 18:50:39 has no hits.

BO13834.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:13:22 Download gff for BO13834.3prime
Subject Subject Range Query Range Percent Splice Strand
fit-PA 1..366 15..381 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:03:18 Download gff for BO13834.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17820-PA 1..366 15..381 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 17:20:25 Download gff for BO13834.3prime
Subject Subject Range Query Range Percent Splice Strand
fit-RA 11..392 12..395 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 21:04:25 Download gff for BO13834.3prime
Subject Subject Range Query Range Percent Splice Strand
fit-RA 11..392 12..395 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 21:04:25 Download gff for BO13834.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 21884063..21884444 12..395 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 17:20:25 Download gff for BO13834.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 17709785..17710166 12..395 98   Plus

BO13834.5prime Sequence

395 bp (394 high quality bases) assembled on 2006-05-08

> BO13834.5prime
GAAGTTATCAGTCGACATGAACTCAACTCTGGTGATTCTACTTCTTTCGG
CTCTGGCTTTGGTGCAGGCCAGGAATATTCGTTGGTCTGAGGAGGACAAC
TCGTCCCAAGGTCCAAGTCTAAGCCACCCGCATCCGCACTCTGTCAACTG
GCCCTGTGATGTGGGTCACTTCCCAGAGGCATTCATTCTAATGCACAAGG
TGGATAAGCGACTGGAACGAATTGACAACGAGAGTACCAAGAAACGGATC
GAGAACTACGCCGTCAATCAGTTGAGGCAGTGCATCTTGGATGGCCAGAT
GGACGTGCACTGCGTTAGGCGTTCGATTGGATACACCATGTCATTCATTC
ACCACCAAATGAGCCAGGCGAATGGAATGGCAAGCTTTCTAGACC

BO13834.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:11:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG17820-PA 366 fit-RA 1..363 17..379 1815 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 02:50:25
Subject Length Description Subject Range Query Range Score Percent Strand
fit-RA 531 CG17820-RA 24..386 17..379 1815 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 02:50:16
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 21884069..21884431 379..17 1815 100 Minus
Blast to na_te.dros performed on 2015-02-04 02:50:20 has no hits.

BO13834.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:13:23 Download gff for BO13834.5prime
Subject Subject Range Query Range Percent Splice Strand
fit-PA 1..366 17..383 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:03:19 Download gff for BO13834.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17820-PA 1..366 17..383 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 20:48:24 Download gff for BO13834.5prime
Subject Subject Range Query Range Percent Splice Strand
fit-RA 11..392 3..386 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:24:50 Download gff for BO13834.5prime
Subject Subject Range Query Range Percent Splice Strand
fit-RA 11..392 3..386 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:24:50 Download gff for BO13834.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 21884063..21884444 3..386 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 20:48:24 Download gff for BO13834.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 17709785..17710166 3..386 98   Minus

BO13834.complete Sequence

397 bp assembled on 2006-10-11

GenBank Submission: FJ632944

> BO13834.complete
GAAGTTATCAGTCGACATGAACTCAACTCTGGTGATTCTACTTCTTTCGG
CTCTGGCTTTGGTGCAGGCCAGGAATATTCGTTGGTCTGAGGAGGACAAC
TCGTCCCAAGGTCCAAGTCTAAGCCACCCGCATCCGCACTCTGTCAACTG
GCCCTGTGATGTGGGTCACTTCCCAGAGGCATTCATTCTAATGCACAAGG
TGGATAAGCGACTGGAACGAATTGACAACGAGAGTACCAAGAAACGGATC
GAGAACTACGCCGTCAATCAGTTGAGGCAGTGCATCTTGGATGGCCAGAT
GGACGTGCACTGCGTTAGGCGTTCGATTGGATACACCATGTCATTCATTC
ACCACCAAATGAGCCAGGCGAATGGAATGGCAAGCTTTCTAGACCAT

BO13834.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:22:05
Subject Length Description Subject Range Query Range Score Percent Strand
fit-RA 366 CG17820-PA 1..363 17..379 1815 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:22:06
Subject Length Description Subject Range Query Range Score Percent Strand
fit-RA 531 CG17820-RA 24..386 17..379 1815 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:22:03
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 21884069..21884431 379..17 1815 100 Minus
Blast to na_te.dros performed on 2014-11-27 15:22:04 has no hits.

BO13834.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:06:46 Download gff for BO13834.complete
Subject Subject Range Query Range Percent Splice Strand
fit-RA 1..366 17..383 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:22:27 Download gff for BO13834.complete
Subject Subject Range Query Range Percent Splice Strand
fit-RA 11..392 3..386 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:40:07 Download gff for BO13834.complete
Subject Subject Range Query Range Percent Splice Strand
fit-RA 24..386 17..381 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:06:46 Download gff for BO13834.complete
Subject Subject Range Query Range Percent Splice Strand
fit-RA 11..392 3..386 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:06:02 Download gff for BO13834.complete
Subject Subject Range Query Range Percent Splice Strand
fit-RA 24..386 17..381 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:06:02 Download gff for BO13834.complete
Subject Subject Range Query Range Percent Splice Strand
3R 21884067..21884431 17..381 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:40:07 Download gff for BO13834.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 17709789..17710153 17..381 99   Minus

BO13834.pep Sequence

Translation from 16 to 397

> BO13834.pep
MNSTLVILLLSALALVQARNIRWSEEDNSSQGPSLSHPHPHSVNWPCDVG
HFPEAFILMHKVDKRLERIDNESTKKRIENYAVNQLRQCILDGQMDVHCV
RRSIGYTMSFIHHQMSQANGMASFLDH

BO13834.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:02:45
Subject Length Description Subject Range Query Range Score Percent Strand
fit-PA 121 CG17820-PA 1..121 1..121 644 100 Plus