Clone Sequence Records
BO13838.3prime Sequence
912 bp (741 high quality bases) assembled on 2006-05-08
> BO13838.3prime
ATGGTCTAGAAAGCTTGCCTTGTAGAGCAGCGGCAGGCGGCAGTGTGGCT
CCGTCTCGCTGGGATTGTCGGAATACAGGGAAATGGTCCTGGCACTGAGA
TCGAAGATGCCAACGGCAATGGTCTTGACCACCTCGTCGCAGCTGTTGTT
CTCCCGCCAGACGCAGTAAACTCCGCCGGACACGTCGCCCAGCATGTGGC
GCACATCCTGCTCGCTCATCGGCGGATTGTACGCTCCAAATGTTTGCATC
CTGGAGATGCTCGAGCTAATCATCAGATCGTTGGCCTGATCCTGCCGAAT
GCGATCGAATTGATTGACATGGTAGTTGTGCTCGCCCAGCGGCACCTCCT
TGATATTCAAATGAGACTCATTCTTGCGGTCCGGCGATGGTGCCATCTCC
ACATTGTAGCACATTTGGCGGGGATCCGCCAGGAAGGTGAAATTGATGGA
ACAGGCATCCGCTGCACCCACTCCCGCATCCTTGAGCACGCGGAAGGCAT
CGTCCACGTTGCTGGTGGCCAACAGAGCCCGGGTGATGAAGTGTCGCGGT
GTCTTGCCGCTGCGCAAGAGCTCCGCACTGATGGTGTTGATGCTGAAGAC
CAATCCATGATGATTATGGCTCATAGTGTATCCGGGCAGATGGCCAGCGT
AGCAGAGGGACATGAAGTGCTCCTCCTTAACGTTGTACTTGCCCTGCGGC
TTGTCACTGATGATGTGTGCCACCACGAAGTAGTAGTGATTCAGGGTCTC
CGTCAGTGCATCCTCCGTGTGGCCCAAAAGGCGGCAATTCTTTTGGTTAA
CAATGATGGTGGAGCAGCCGGTTGGGTGGTTTTTGCTACGTGGTTGGTGC
TTCAATGCCTGCGGTAGAATCTCATCCAGATGCAGCAAAATAGCTTATGG
AATTCCACCTCC
BO13838.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:11:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12120-PA | 1164 | CG12120-RA | 290..1161 | 890..19 | 4335 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:15:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| t-RB | 1632 | CG12120-RB | 498..1392 | 912..19 | 4435 | 99.8 | Minus |
| t-RA | 1975 | CG12120-RA | 498..1392 | 912..19 | 4435 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:15:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 9218238..9218529 | 19..310 | 1460 | 100 | Plus |
| X | 23542271 | X | 9218953..9219187 | 549..783 | 1175 | 100 | Plus |
| X | 23542271 | X | 9218773..9218894 | 427..548 | 610 | 100 | Plus |
| X | 23542271 | X | 9218588..9218704 | 311..427 | 585 | 100 | Plus |
| X | 23542271 | X | 9219253..9219359 | 784..890 | 520 | 99.1 | Plus |
Blast to na_te.dros performed on 2015-02-10 21:15:49 has no hits.
BO13838.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:13:26 Download gff for
BO13838.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12120-PA | 267..1164 | 18..912 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:03:23 Download gff for
BO13838.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12120-PA | 267..1164 | 18..912 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:20:14 Download gff for
BO13838.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| t-RA | 498..1392 | 19..912 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:36:48 Download gff for
BO13838.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| t-RA | 498..1392 | 19..912 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:36:48 Download gff for
BO13838.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 9218953..9219187 | 549..783 | 100 | <- | Plus |
| X | 9219253..9219363 | 784..893 | 98 | <- | Plus |
| X | 9221210..9221228 | 894..912 | 100 | | Plus |
| X | 9218238..9218529 | 19..310 | 100 | <- | Plus |
| X | 9218588..9218704 | 311..427 | 100 | <- | Plus |
| X | 9218774..9218894 | 428..548 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:20:14 Download gff for
BO13838.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 9112986..9113220 | 549..783 | 100 | <- | Plus |
| arm_X | 9113286..9113396 | 784..893 | 98 | <- | Plus |
| arm_X | 9112271..9112562 | 19..310 | 100 | <- | Plus |
| arm_X | 9112621..9112737 | 311..427 | 100 | <- | Plus |
| arm_X | 9112807..9112927 | 428..548 | 100 | <- | Plus |
| arm_X | 9115243..9115261 | 894..912 | 100 | | Plus |
BO13838.5prime Sequence
952 bp (811 high quality bases) assembled on 2006-05-08
> BO13838.5prime
GAAGTTATCAGTCGAACATGTCCTCCGGAAAGATCCTGCCACGTCGCCAG
GCGGTGCCAGTGCTCTACACCAGGGGCACCCATTACGAAGTTGGCTTCGA
TATGGGTCGCACATTTGGGTCCATGATCAAGAACTTTCTGATCTTATCGA
AGCCCCTCAACGAGACCTACTTGCCGCTCTACCAGTCGCCAAAAGGCAGG
CAGATCTACAACGAGACCCTGGGTTCGGTGAAGGACAGCTTCCCTCAATA
TGTGCGCGAACTGGAGGGCGTGGCCGATGGTGCGGAGGTGGAATTCCATA
AGCTATTTTTGCTGCATCTGGATGAGATTCTACCGCAGGCATTGAAGCAC
CAACCACGTAGCAAAAACCAACCAACCGGCTGCTCCACCATCATTGTTAA
CCAAAAGAATTGCCGCCTTTTGGGCCACACGGAGGATGCACTGACGGAGA
CCCTGAATCACTACTACTTCGTGGTGGCACACATCATCAGTGACAAGCCG
CAGGGCAAGTACAACGTTAAGGAGGAGCACTTCATGTCCCTCTGCTACGC
TGGCCATCTGCCCGGATACACTATGAGCCATAATCATCATGGATTGGTCT
TCAGCATCAACACCATCAGTGCGGAGCTCTTGCGCAGCGGCAAGACACCG
CGACACTTCATCACCCGGGCTCTGTTGGCCACCAGCAACGTGGACGATGC
CTTCCGCGTGCTCAAGGATGCGGGAGTGGGTGCAGCGGATGCCTGTTCCA
TCAATTTCACCTTCCTGGCGGATCCCCGCCAAATGTGCTACAATGTGGAG
ATGGCACCATCGCCGGGACCGCAAGAATGAGTCTCATTTGAATATCAAGG
AGGTGCCGCTGGGCGAGCACAACTACCATGTCAATCAATTCGATCGCATT
CGGCAAGATCAGGCCAACGATCTGATGATTAGCTCGAGCATCTCCAGGAT
GC
BO13838.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:11:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12120-PA | 1164 | CG12120-RA | 1..799 | 18..816 | 3995 | 100 | Plus |
| CG12120-PA | 1164 | CG12120-RA | 798..934 | 816..952 | 660 | 99.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:42:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| t-RB | 1632 | CG12120-RB | 232..1165 | 18..952 | 4635 | 99.8 | Plus |
| t-RA | 1975 | CG12120-RA | 232..1165 | 18..952 | 4635 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:42:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 9218953..9219187 | 648..414 | 1175 | 100 | Minus |
| X | 23542271 | X | 9218773..9218894 | 770..649 | 610 | 100 | Minus |
| X | 23542271 | X | 9219253..9219365 | 413..301 | 565 | 100 | Minus |
| X | 23542271 | X | 9218588..9218704 | 887..770 | 540 | 99.2 | Minus |
| X | 23542271 | X | 9221210..9221313 | 302..199 | 520 | 100 | Minus |
| X | 23542271 | X | 9221415..9221510 | 199..104 | 480 | 100 | Minus |
| X | 23542271 | X | 9222939..9223026 | 105..18 | 440 | 100 | Minus |
| X | 23542271 | X | 9218465..9218529 | 952..888 | 310 | 98.5 | Minus |
Blast to na_te.dros performed on 2015-02-11 16:42:52 has no hits.
BO13838.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:13:27 Download gff for
BO13838.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12120-PA | 1..934 | 18..952 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:03:25 Download gff for
BO13838.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12120-PA | 1..934 | 18..952 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:05:16 Download gff for
BO13838.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| t-RA | 223..1165 | 7..952 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:52:49 Download gff for
BO13838.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| t-RA | 223..1165 | 7..952 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:52:49 Download gff for
BO13838.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 9218588..9218704 | 770..887 | 99 | <- | Minus |
| X | 9218774..9218894 | 649..769 | 100 | <- | Minus |
| X | 9218953..9219187 | 414..648 | 100 | <- | Minus |
| X | 9219253..9219363 | 303..413 | 100 | <- | Minus |
| X | 9221210..9221313 | 199..302 | 100 | <- | Minus |
| X | 9221416..9221509 | 105..198 | 100 | <- | Minus |
| X | 9218465..9218529 | 888..952 | 98 | <- | Minus |
| X | 9222940..9223035 | 7..104 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:05:16 Download gff for
BO13838.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 9112498..9112562 | 888..952 | 98 | <- | Minus |
| arm_X | 9112621..9112737 | 770..887 | 99 | <- | Minus |
| arm_X | 9112807..9112927 | 649..769 | 100 | <- | Minus |
| arm_X | 9112986..9113220 | 414..648 | 100 | <- | Minus |
| arm_X | 9113286..9113396 | 303..413 | 100 | <- | Minus |
| arm_X | 9115243..9115346 | 199..302 | 100 | <- | Minus |
| arm_X | 9115449..9115542 | 105..198 | 100 | <- | Minus |
| arm_X | 9116973..9117068 | 7..104 | 95 | | Minus |
BO13838.complete Sequence
1196 bp assembled on 2011-06-28
GenBank Submission: KX796852
> BO13838.complete
GAAGTTATCAGTCGAACATGTCCTCCGGAAAGATCCTGCCACGTCGCCAG
GCGGTGCCAGTGCTCTACACCAGGGGCACCCATTACGAAGTTGGCTTCGA
TATGGGTCGCACATTTGGGTCCATGATCAAGAACTTTCTGATCTTATCGA
AGCCCCTCAACGAGACCTACTTGCCGCTCTACCAGTCGCCAAAAGGCAGG
CAGATCTACAACGAGACCCTGGGTTCGGTGAAGGACAGCTTCCCTCAATA
TGTGCGCGAACTGGAGGGCGTGGCCGATGGTGCGGAGGTGGAATTCCATA
AGCTATTTTTGCTGCATCTGGATGAGATTCTACCGCAGGCATTGAAGCAC
CAACCACGTAGCAAAAACCAACCAACCGGCTGCTCCACCATCATTGTTAA
CCAAAAGAATTGCCGCCTTTTGGGCCACACGGAGGATGCACTGACGGAGA
CCCTGAATCACTACTACTTCGTGGTGGCACACATCATCAGTGACAAGCCG
CAGGGCAAGTACAACGTTAAGGAGGAGCACTTCATGTCCCTCTGCTACGC
TGGCCATCTGCCCGGATACACTATGAGCCATAATCATCATGGATTGGTCT
TCAGCATCAACACCATCAGTGCGGAGCTCTTGCGCAGCGGCAAGACACCG
CGACACTTCATCACCCGGGCTCTGTTGGCCACCAGCAACGTGGACGATGC
CTTCCGCGTGCTCAAGGATGCGGGAGTGGGTGCAGCGGATGCCTGTTCCA
TCAATTTCACCTTCCTGGCGGATCCCCGCCAAATGTGCTACAATGTGGAG
ATGGCACCATCGCCGGACCGCAAGAATGAGTCTCATTTGAATATCAAGGA
GGTGCCGCTGGGCGAGCACAACTACCATGTCAATCAATTCGATCGCATTC
GGCAGGATCAGGCCAACGATCTGATGATTAGCTCGAGCATCTCCAGGATG
CAAACATTTGGAGCGTACAATCCGCCGATGAGCGAGCAGGATGTGCGCCA
CATGCTGGGCGACGTGTCCGGCGGAGTTTACTGCGTCTGGCGGGAGAACA
ACAGCTGCGACGAGGTGGTCAAGACCATTGCCGTTGGCATCTTCGATCTC
AGTGCCAGGACCATTTCCCTGTATTCCGACAATCCCAGCGAGACGGAGCC
ACACTGCCGCCTGCCGCTGCTCTACAAGGCAAGCTTTCTAGACCAT
BO13838.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:20:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| t-RB | 1164 | CG12120-PB | 1..1161 | 18..1178 | 5805 | 100 | Plus |
| t-RA | 1164 | CG12120-PA | 1..1161 | 18..1178 | 5805 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:20:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| t-RB | 1632 | CG12120-RB | 232..1392 | 18..1178 | 5805 | 100 | Plus |
| t-RA | 1975 | CG12120-RA | 232..1392 | 18..1178 | 5805 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:20:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 9218238..9218529 | 1178..887 | 1460 | 100 | Minus |
| X | 23542271 | X | 9218953..9219187 | 648..414 | 1175 | 100 | Minus |
| X | 23542271 | X | 9218773..9218894 | 770..649 | 610 | 100 | Minus |
| X | 23542271 | X | 9218588..9218704 | 886..770 | 585 | 100 | Minus |
| X | 23542271 | X | 9219253..9219365 | 413..301 | 565 | 100 | Minus |
| X | 23542271 | X | 9221210..9221313 | 302..199 | 520 | 100 | Minus |
| X | 23542271 | X | 9221415..9221510 | 199..104 | 480 | 100 | Minus |
| X | 23542271 | X | 9222939..9223026 | 105..18 | 440 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 16:20:01 has no hits.
BO13838.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-06-28 12:16:34 Download gff for
BO13838.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| t-RA | 231..1392 | 17..1180 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:58:12 Download gff for
BO13838.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| t-RA | 231..1392 | 17..1180 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:16:36 Download gff for
BO13838.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| t-RA | 231..1392 | 17..1180 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:16:36 Download gff for
BO13838.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 9219253..9219363 | 303..413 | 100 | <- | Minus |
| X | 9221210..9221313 | 199..302 | 100 | <- | Minus |
| X | 9221416..9221509 | 105..198 | 100 | <- | Minus |
| X | 9222940..9223026 | 17..104 | 98 | | Minus |
| X | 9218953..9219187 | 414..648 | 100 | <- | Minus |
| X | 9218588..9218704 | 770..886 | 100 | <- | Minus |
| X | 9218774..9218894 | 649..769 | 100 | <- | Minus |
| X | 9218236..9218529 | 887..1180 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:58:12 Download gff for
BO13838.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 9112621..9112737 | 770..886 | 100 | <- | Minus |
| arm_X | 9112807..9112927 | 649..769 | 100 | <- | Minus |
| arm_X | 9112986..9113220 | 414..648 | 100 | <- | Minus |
| arm_X | 9113286..9113396 | 303..413 | 100 | <- | Minus |
| arm_X | 9115243..9115346 | 199..302 | 100 | <- | Minus |
| arm_X | 9115449..9115542 | 105..198 | 100 | <- | Minus |
| arm_X | 9112269..9112562 | 887..1180 | 99 | <- | Minus |
| arm_X | 9116973..9117059 | 17..104 | 98 | | Minus |
BO13838.pep Sequence
Translation from 17 to 1196
> BO13838.pep
MSSGKILPRRQAVPVLYTRGTHYEVGFDMGRTFGSMIKNFLILSKPLNET
YLPLYQSPKGRQIYNETLGSVKDSFPQYVRELEGVADGAEVEFHKLFLLH
LDEILPQALKHQPRSKNQPTGCSTIIVNQKNCRLLGHTEDALTETLNHYY
FVVAHIISDKPQGKYNVKEEHFMSLCYAGHLPGYTMSHNHHGLVFSINTI
SAELLRSGKTPRHFITRALLATSNVDDAFRVLKDAGVGAADACSINFTFL
ADPRQMCYNVEMAPSPDRKNESHLNIKEVPLGEHNYHVNQFDRIRQDQAN
DLMISSSISRMQTFGAYNPPMSEQDVRHMLGDVSGGVYCVWRENNSCDEV
VKTIAVGIFDLSARTISLYSDNPSETEPHCRLPLLYKASFLDH
BO13838.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:51:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| t-PB | 387 | CG12120-PB | 1..387 | 1..387 | 2052 | 100 | Plus |
| t-PA | 387 | CG12120-PA | 1..387 | 1..387 | 2052 | 100 | Plus |
