Clone BO13840 Report

Search the DGRC for BO13840

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:138
Well:40
Vector:pDNR-Dual
Associated Gene/TranscriptCG9542-RA
Protein status:BO13840.pep: validated full length
Sequenced Size:934

Clone Sequence Records

BO13840.3prime Sequence

880 bp (779 high quality bases) assembled on 2006-05-08

> BO13840.3prime
ATGGTCTAGAAAGCTTGCTTCAATTTCAATGTTGCGCAGAAAGCGGGATA
CATCCGAATCGTCGATGGCCGTCTCCTCGATGATGTCGAAGTGGTCGTAC
CCTTTGAAGAGCGTAAAGCTCGCCTTGTAGCCCTTCTTTCTCAGCACATC
AGCGTAGTGGCGACTTTGCTCGATGAAGGTGGTGCTGTCATGCTCGGCGG
CCACCACGTAGATCTTGGTGGAGTTCCAAACGGTAACATCGGTGTATTCC
CACAGCATGGGCGACACGGACTCGATATTCCGCTCGTTGAGGCCCAGAAT
ATTTTTGGGATTAACCGATTCCAAGTTAGAGAGCTCCCTCAGATCGTAAA
CGCCGCAGAGGAAGATCAAAGCCCACACCATCTTGCTCCGCTGGGCTGTA
ATCACATTTGGGCGCATGAGTATCTGGGCCAGCAAGTGGGCACCAGCCGA
GTGTCCGGCGAAGGTGAGCGACGACACTTTGGTCATTTCGGTGTAGTCAA
AGATCCAGTTGAGGAAATGGGTGAACTGGGTCATCAGCTGCTCGAGGGTG
ACCTGCGGGCACAGGTTGTAGTCCATGACGGCCACTCGGTATCCACGCCG
CACCAGGGGACCCACAATCGAGCAGGACATGCTCATGTCCATCTCCTGCC
AGTAGCCGCCGTGCACGAAGACGAAAAGCGGCGCCTGGTTGGTGGTCTTT
TCGCTGTAGAACACATCCACCAACTGACGACCTTCTCCGTAGCGCAAGTG
GTCCACAGTGATGCCCTGCTTCTCAGTCAGTTCCCTGCCATGCTGCTTGG
TCACCCGAACAAAGTGCTCTAGCACGGCCCAATTTCGGTTCCGGCTGATC
CTGAACCCTGGTCGTATGATAGCTGGGGAA

BO13840.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:11:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG9542-PA 903 CG9542-RA 90..900 829..19 4055 100 Minus
CG9542-PA 903 CG9542-RA 43..86 877..834 195 97.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 11:39:34
Subject Length Description Subject Range Query Range Score Percent Strand
KFase-RB 1363 CG9542-RB 248..1105 877..19 4240 99.7 Minus
KFase-RA 1002 CG9542-RA 107..964 877..19 4240 99.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 11:39:27
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 6487600..6488372 19..791 3865 100 Plus
2L 23513712 2L 6488425..6488509 792..877 350 96.5 Plus
Blast to na_te.dros performed on 2015-01-31 11:39:30 has no hits.

BO13840.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:13:28 Download gff for BO13840.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9542-PA 42..903 15..878 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:03:26 Download gff for BO13840.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9542-PA 42..903 15..878 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:51:10 Download gff for BO13840.3prime
Subject Subject Range Query Range Percent Splice Strand
KFase-RA 104..970 12..880 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:57:26 Download gff for BO13840.3prime
Subject Subject Range Query Range Percent Splice Strand
KFase-RA 104..970 12..880 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:57:26 Download gff for BO13840.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 6487594..6488372 12..791 99 <- Plus
2L 6488425..6488511 792..880 95   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:51:10 Download gff for BO13840.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 6487594..6488372 12..791 99 <- Plus
arm_2L 6488425..6488511 792..880 95   Plus

BO13840.5prime Sequence

832 bp (792 high quality bases) assembled on 2006-05-08

> BO13840.5prime
GAAGTTATCAGTCGACATGTACAATCCGAGGTGCAAAGACCTTGACCGGG
ACTATTTTCCCAGCTATCATACGACCAGGTTTCAGGATCAGCCGGAACCG
AATTTGGCCGTGCTAGAGCACTTTGTTCGGGTGACCAAGCAGCATGGCAG
GGAACTGACTGAGAAGCAGGGCATCACTGTGGACCACTTGCGCTACGGAG
AAGGTCGTCAGTTGGTGGATGTGTTCTACAGCGAAAAGACCACCAACCAG
GCGCCGCTTTTCGTCTTCGTGCACGGCGGCTACTGGCAGGAGATGGACAT
GAGCATGTCCTGCTCGATTGTGGGTCCCCTGGTGCGGCGTGGATACCGAG
TGGCCGTCATGGACTACAACCTGTGCCCGCAGGTCACCCTCGAGCAGCTG
ATGACCCAGTTCACCCATTTCCTCAACTGGATCTTTGACTACACCGAAAT
GACCAAAGTGTCGTCGCTCACCTTCGCCGGACACTCGGCTGGTGCCCACT
TGCTGGCCCAGATACTCATGCGCCCAAATGTGATTACAGCCCAGCGGAGC
AAGATGGTGTGGGCTTTGATCTTCCTCTGCGGCGTTTACGATCTGAGGGA
GCTCTCTAACTTGGAATCGGTTAATCCCAAAAATATTCTGGGCCTCAACG
AGCGGAATATCGAGTCCGTGTCGCCCATGCTGTGGGAATACACCGATGTT
ACCGTTTGGAACTCCACCAAGATCTACGTGGTGGCCGCCGAGCATGACAG
CACCACCTTCATCGAGCAAAGTCGCCACTACGCTGATGTGCTGAGAAAGA
AGGCCTACAAAGCGAGCTTTACGCTCTTCAAA

BO13840.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:11:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG9542-PA 903 CG9542-RA 1..816 17..832 4030 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:39:12
Subject Length Description Subject Range Query Range Score Percent Strand
KFase-RB 1363 CG9542-RB 206..1021 17..832 4050 99.8 Plus
KFase-RA 1002 CG9542-RA 65..880 17..832 4050 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:39:08
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 6487684..6488372 832..144 3415 99.7 Minus
2L 23513712 2L 6488425..6488551 143..17 635 100 Minus
Blast to na_te.dros performed on 2015-02-12 01:39:10 has no hits.

BO13840.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:13:29 Download gff for BO13840.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9542-PA 1..813 17..829 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:03:28 Download gff for BO13840.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9542-PA 1..813 17..829 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 19:39:07 Download gff for BO13840.5prime
Subject Subject Range Query Range Percent Splice Strand
KFase-RA 56..877 5..829 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:44:23 Download gff for BO13840.5prime
Subject Subject Range Query Range Percent Splice Strand
KFase-RA 56..877 5..829 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:44:23 Download gff for BO13840.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 6487687..6488372 144..829 99 <- Minus
2L 6488425..6488556 13..143 97 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 19:39:07 Download gff for BO13840.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 6487687..6488372 144..829 99 <- Minus
arm_2L 6488425..6488556 13..143 97 -> Minus

BO13840.complete Sequence

934 bp assembled on 2006-10-11

GenBank Submission: FJ638719

> BO13840.complete
GAAGTTATCAGTCGACATGTACAATCCGAGGTGCAAAGACCTTGACCGGG
ACTATTTTCCCAGCTATCATACGACCAGGTTTCAGGATCAGCCGGAACCG
AATTTGGCCGTGCTAGAGCACTTTGTTCGGGTGACCAAGCAGCATGGCAG
GGAACTGACTGAGAAGCAGGGCATCACTGTGGACCACTTGCGCTACGGAG
AAGGTCGTCAGTTGGTGGATGTGTTCTACAGCGAAAAGACCACCAACCAG
GCGCCGCTTTTCGTCTTCGTGCACGGCGGCTACTGGCAGGAGATGGACAT
GAGCATGTCCTGCTCGATTGTGGGTCCCCTGGTGCGGCGTGGATACCGAG
TGGCCGTCATGGACTACAACCTGTGCCCGCAGGTCACCCTCGAGCAGCTG
ATGACCCAGTTCACCCATTTCCTCAACTGGATCTTTGACTACACCGAAAT
GACCAAAGTGTCGTCGCTCACCTTCGCCGGACACTCGGCTGGTGCCCACT
TGCTGGCCCAGATACTCATGCGCCCAAATGTGATTACAGCCCAGCGGAGC
AAGATGGTGTGGGCTTTGATCTTCCTCTGCGGCGTTTACGATCTGAGGGA
GCTCTCTAACTTGGAATCGGTTAATCCCAAAAATATTCTGGGCCTCAACG
AGCGGAATATCGAGTCCGTGTCGCCCATGCTGTGGGAATACACCGATGTT
ACCGTTTGGAACTCCACCAAGATCTACGTGGTGGCCGCCGAGCATGACAG
CACCACCTTCATCGAGCAAAGTCGCCACTACGCTGATGTGCTGAGAAAGA
AGGGCTACAAGGCGAGCTTTACGCTCTTCAAAGGGTACGACCACTTCGAC
ATCATCGAGGAGACGGCCATCGACGATTCGGATGTATCCCGCTTTCTGCG
CAACATTGAAATTGAAGCAAGCTTTCTAGACCAT

BO13840.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:26:33
Subject Length Description Subject Range Query Range Score Percent Strand
KFase-RB 903 CG9542-PB 1..900 17..916 4500 100 Plus
KFase-RA 903 CG9542-PA 1..900 17..916 4500 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:26:34
Subject Length Description Subject Range Query Range Score Percent Strand
KFase-RB 1363 CG9542-RB 206..1105 17..916 4500 100 Plus
KFase-RA 1002 CG9542-RA 65..964 17..916 4500 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:26:32
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 6487600..6488372 916..144 3865 100 Minus
2L 23513712 2L 6488425..6488551 143..17 635 100 Minus
Blast to na_te.dros performed on 2014-11-28 08:26:32 has no hits.

BO13840.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:24:05 Download gff for BO13840.complete
Subject Subject Range Query Range Percent Splice Strand
CG9542-RA 1..903 17..920 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:51:47 Download gff for BO13840.complete
Subject Subject Range Query Range Percent Splice Strand
CG9542-RA 65..964 17..918 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:20:41 Download gff for BO13840.complete
Subject Subject Range Query Range Percent Splice Strand
KFase-RA 65..964 17..918 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:24:05 Download gff for BO13840.complete
Subject Subject Range Query Range Percent Splice Strand
CG9542-RA 56..970 5..923 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:18:20 Download gff for BO13840.complete
Subject Subject Range Query Range Percent Splice Strand
KFase-RA 65..964 17..918 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:18:20 Download gff for BO13840.complete
Subject Subject Range Query Range Percent Splice Strand
2L 6487598..6488372 144..918 99 <- Minus
2L 6488425..6488551 17..143 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:20:41 Download gff for BO13840.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 6487598..6488372 144..918 99 <- Minus
arm_2L 6488425..6488551 17..143 100   Minus

BO13840.pep Sequence

Translation from 16 to 934

> BO13840.pep
MYNPRCKDLDRDYFPSYHTTRFQDQPEPNLAVLEHFVRVTKQHGRELTEK
QGITVDHLRYGEGRQLVDVFYSEKTTNQAPLFVFVHGGYWQEMDMSMSCS
IVGPLVRRGYRVAVMDYNLCPQVTLEQLMTQFTHFLNWIFDYTEMTKVSS
LTFAGHSAGAHLLAQILMRPNVITAQRSKMVWALIFLCGVYDLRELSNLE
SVNPKNILGLNERNIESVSPMLWEYTDVTVWNSTKIYVVAAEHDSTTFIE
QSRHYADVLRKKGYKASFTLFKGYDHFDIIEETAIDDSDVSRFLRNIEIE
ASFLDH

BO13840.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:40:35
Subject Length Description Subject Range Query Range Score Percent Strand
KFase-PB 300 CG9542-PB 1..300 1..300 1590 100 Plus
KFase-PA 300 CG9542-PA 1..300 1..300 1590 100 Plus