Clone Sequence Records
BO13840.3prime Sequence
880 bp (779 high quality bases) assembled on 2006-05-08
> BO13840.3prime
ATGGTCTAGAAAGCTTGCTTCAATTTCAATGTTGCGCAGAAAGCGGGATA
CATCCGAATCGTCGATGGCCGTCTCCTCGATGATGTCGAAGTGGTCGTAC
CCTTTGAAGAGCGTAAAGCTCGCCTTGTAGCCCTTCTTTCTCAGCACATC
AGCGTAGTGGCGACTTTGCTCGATGAAGGTGGTGCTGTCATGCTCGGCGG
CCACCACGTAGATCTTGGTGGAGTTCCAAACGGTAACATCGGTGTATTCC
CACAGCATGGGCGACACGGACTCGATATTCCGCTCGTTGAGGCCCAGAAT
ATTTTTGGGATTAACCGATTCCAAGTTAGAGAGCTCCCTCAGATCGTAAA
CGCCGCAGAGGAAGATCAAAGCCCACACCATCTTGCTCCGCTGGGCTGTA
ATCACATTTGGGCGCATGAGTATCTGGGCCAGCAAGTGGGCACCAGCCGA
GTGTCCGGCGAAGGTGAGCGACGACACTTTGGTCATTTCGGTGTAGTCAA
AGATCCAGTTGAGGAAATGGGTGAACTGGGTCATCAGCTGCTCGAGGGTG
ACCTGCGGGCACAGGTTGTAGTCCATGACGGCCACTCGGTATCCACGCCG
CACCAGGGGACCCACAATCGAGCAGGACATGCTCATGTCCATCTCCTGCC
AGTAGCCGCCGTGCACGAAGACGAAAAGCGGCGCCTGGTTGGTGGTCTTT
TCGCTGTAGAACACATCCACCAACTGACGACCTTCTCCGTAGCGCAAGTG
GTCCACAGTGATGCCCTGCTTCTCAGTCAGTTCCCTGCCATGCTGCTTGG
TCACCCGAACAAAGTGCTCTAGCACGGCCCAATTTCGGTTCCGGCTGATC
CTGAACCCTGGTCGTATGATAGCTGGGGAA
BO13840.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:11:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9542-PA | 903 | CG9542-RA | 90..900 | 829..19 | 4055 | 100 | Minus |
CG9542-PA | 903 | CG9542-RA | 43..86 | 877..834 | 195 | 97.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 11:39:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
KFase-RB | 1363 | CG9542-RB | 248..1105 | 877..19 | 4240 | 99.7 | Minus |
KFase-RA | 1002 | CG9542-RA | 107..964 | 877..19 | 4240 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 11:39:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 6487600..6488372 | 19..791 | 3865 | 100 | Plus |
2L | 23513712 | 2L | 6488425..6488509 | 792..877 | 350 | 96.5 | Plus |
Blast to na_te.dros performed on 2015-01-31 11:39:30 has no hits.
BO13840.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:13:28 Download gff for
BO13840.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9542-PA | 42..903 | 15..878 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:03:26 Download gff for
BO13840.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9542-PA | 42..903 | 15..878 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:51:10 Download gff for
BO13840.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
KFase-RA | 104..970 | 12..880 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:57:26 Download gff for
BO13840.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
KFase-RA | 104..970 | 12..880 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:57:26 Download gff for
BO13840.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 6487594..6488372 | 12..791 | 99 | <- | Plus |
2L | 6488425..6488511 | 792..880 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:51:10 Download gff for
BO13840.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 6487594..6488372 | 12..791 | 99 | <- | Plus |
arm_2L | 6488425..6488511 | 792..880 | 95 | | Plus |
BO13840.5prime Sequence
832 bp (792 high quality bases) assembled on 2006-05-08
> BO13840.5prime
GAAGTTATCAGTCGACATGTACAATCCGAGGTGCAAAGACCTTGACCGGG
ACTATTTTCCCAGCTATCATACGACCAGGTTTCAGGATCAGCCGGAACCG
AATTTGGCCGTGCTAGAGCACTTTGTTCGGGTGACCAAGCAGCATGGCAG
GGAACTGACTGAGAAGCAGGGCATCACTGTGGACCACTTGCGCTACGGAG
AAGGTCGTCAGTTGGTGGATGTGTTCTACAGCGAAAAGACCACCAACCAG
GCGCCGCTTTTCGTCTTCGTGCACGGCGGCTACTGGCAGGAGATGGACAT
GAGCATGTCCTGCTCGATTGTGGGTCCCCTGGTGCGGCGTGGATACCGAG
TGGCCGTCATGGACTACAACCTGTGCCCGCAGGTCACCCTCGAGCAGCTG
ATGACCCAGTTCACCCATTTCCTCAACTGGATCTTTGACTACACCGAAAT
GACCAAAGTGTCGTCGCTCACCTTCGCCGGACACTCGGCTGGTGCCCACT
TGCTGGCCCAGATACTCATGCGCCCAAATGTGATTACAGCCCAGCGGAGC
AAGATGGTGTGGGCTTTGATCTTCCTCTGCGGCGTTTACGATCTGAGGGA
GCTCTCTAACTTGGAATCGGTTAATCCCAAAAATATTCTGGGCCTCAACG
AGCGGAATATCGAGTCCGTGTCGCCCATGCTGTGGGAATACACCGATGTT
ACCGTTTGGAACTCCACCAAGATCTACGTGGTGGCCGCCGAGCATGACAG
CACCACCTTCATCGAGCAAAGTCGCCACTACGCTGATGTGCTGAGAAAGA
AGGCCTACAAAGCGAGCTTTACGCTCTTCAAA
BO13840.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:11:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9542-PA | 903 | CG9542-RA | 1..816 | 17..832 | 4030 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:39:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
KFase-RB | 1363 | CG9542-RB | 206..1021 | 17..832 | 4050 | 99.8 | Plus |
KFase-RA | 1002 | CG9542-RA | 65..880 | 17..832 | 4050 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:39:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 6487684..6488372 | 832..144 | 3415 | 99.7 | Minus |
2L | 23513712 | 2L | 6488425..6488551 | 143..17 | 635 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 01:39:10 has no hits.
BO13840.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:13:29 Download gff for
BO13840.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9542-PA | 1..813 | 17..829 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:03:28 Download gff for
BO13840.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9542-PA | 1..813 | 17..829 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 19:39:07 Download gff for
BO13840.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
KFase-RA | 56..877 | 5..829 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:44:23 Download gff for
BO13840.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
KFase-RA | 56..877 | 5..829 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:44:23 Download gff for
BO13840.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 6487687..6488372 | 144..829 | 99 | <- | Minus |
2L | 6488425..6488556 | 13..143 | 97 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 19:39:07 Download gff for
BO13840.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 6487687..6488372 | 144..829 | 99 | <- | Minus |
arm_2L | 6488425..6488556 | 13..143 | 97 | -> | Minus |
BO13840.complete Sequence
934 bp assembled on 2006-10-11
GenBank Submission: FJ638719
> BO13840.complete
GAAGTTATCAGTCGACATGTACAATCCGAGGTGCAAAGACCTTGACCGGG
ACTATTTTCCCAGCTATCATACGACCAGGTTTCAGGATCAGCCGGAACCG
AATTTGGCCGTGCTAGAGCACTTTGTTCGGGTGACCAAGCAGCATGGCAG
GGAACTGACTGAGAAGCAGGGCATCACTGTGGACCACTTGCGCTACGGAG
AAGGTCGTCAGTTGGTGGATGTGTTCTACAGCGAAAAGACCACCAACCAG
GCGCCGCTTTTCGTCTTCGTGCACGGCGGCTACTGGCAGGAGATGGACAT
GAGCATGTCCTGCTCGATTGTGGGTCCCCTGGTGCGGCGTGGATACCGAG
TGGCCGTCATGGACTACAACCTGTGCCCGCAGGTCACCCTCGAGCAGCTG
ATGACCCAGTTCACCCATTTCCTCAACTGGATCTTTGACTACACCGAAAT
GACCAAAGTGTCGTCGCTCACCTTCGCCGGACACTCGGCTGGTGCCCACT
TGCTGGCCCAGATACTCATGCGCCCAAATGTGATTACAGCCCAGCGGAGC
AAGATGGTGTGGGCTTTGATCTTCCTCTGCGGCGTTTACGATCTGAGGGA
GCTCTCTAACTTGGAATCGGTTAATCCCAAAAATATTCTGGGCCTCAACG
AGCGGAATATCGAGTCCGTGTCGCCCATGCTGTGGGAATACACCGATGTT
ACCGTTTGGAACTCCACCAAGATCTACGTGGTGGCCGCCGAGCATGACAG
CACCACCTTCATCGAGCAAAGTCGCCACTACGCTGATGTGCTGAGAAAGA
AGGGCTACAAGGCGAGCTTTACGCTCTTCAAAGGGTACGACCACTTCGAC
ATCATCGAGGAGACGGCCATCGACGATTCGGATGTATCCCGCTTTCTGCG
CAACATTGAAATTGAAGCAAGCTTTCTAGACCAT
BO13840.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:26:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
KFase-RB | 903 | CG9542-PB | 1..900 | 17..916 | 4500 | 100 | Plus |
KFase-RA | 903 | CG9542-PA | 1..900 | 17..916 | 4500 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:26:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
KFase-RB | 1363 | CG9542-RB | 206..1105 | 17..916 | 4500 | 100 | Plus |
KFase-RA | 1002 | CG9542-RA | 65..964 | 17..916 | 4500 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:26:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 6487600..6488372 | 916..144 | 3865 | 100 | Minus |
2L | 23513712 | 2L | 6488425..6488551 | 143..17 | 635 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 08:26:32 has no hits.
BO13840.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:24:05 Download gff for
BO13840.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9542-RA | 1..903 | 17..920 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:51:47 Download gff for
BO13840.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9542-RA | 65..964 | 17..918 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:20:41 Download gff for
BO13840.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
KFase-RA | 65..964 | 17..918 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:24:05 Download gff for
BO13840.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9542-RA | 56..970 | 5..923 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:18:20 Download gff for
BO13840.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
KFase-RA | 65..964 | 17..918 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:18:20 Download gff for
BO13840.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 6487598..6488372 | 144..918 | 99 | <- | Minus |
2L | 6488425..6488551 | 17..143 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:20:41 Download gff for
BO13840.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 6487598..6488372 | 144..918 | 99 | <- | Minus |
arm_2L | 6488425..6488551 | 17..143 | 100 | | Minus |
BO13840.pep Sequence
Translation from 16 to 934
> BO13840.pep
MYNPRCKDLDRDYFPSYHTTRFQDQPEPNLAVLEHFVRVTKQHGRELTEK
QGITVDHLRYGEGRQLVDVFYSEKTTNQAPLFVFVHGGYWQEMDMSMSCS
IVGPLVRRGYRVAVMDYNLCPQVTLEQLMTQFTHFLNWIFDYTEMTKVSS
LTFAGHSAGAHLLAQILMRPNVITAQRSKMVWALIFLCGVYDLRELSNLE
SVNPKNILGLNERNIESVSPMLWEYTDVTVWNSTKIYVVAAEHDSTTFIE
QSRHYADVLRKKGYKASFTLFKGYDHFDIIEETAIDDSDVSRFLRNIEIE
ASFLDH
BO13840.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:40:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
KFase-PB | 300 | CG9542-PB | 1..300 | 1..300 | 1590 | 100 | Plus |
KFase-PA | 300 | CG9542-PA | 1..300 | 1..300 | 1590 | 100 | Plus |