Clone BO13841 Report

Search the DGRC for BO13841

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:138
Well:41
Vector:pDNR-Dual
Associated Gene/TranscriptJon25Biii-RA
Protein status:BO13841.pep: validated full length
Sequenced Size:808

Clone Sequence Records

BO13841.3prime Sequence

725 bp (632 high quality bases) assembled on 2006-05-08

> BO13841.3prime
ATGGTCTAGAAAGCTTGCGTAAGAGATGCCAGTGTGGTCACGGATCCAGT
CCAAGTGGTAGGTGACGCGCTGGAATCCAGCAGGAGCACCCGACTGGCAG
CCGTTGGAGGAGACGAAGTTGCTAACTCCCACCAGCTTGGAGCCGTCGTG
TGTGACAAGGGGACCGCCAGAGTCACCTCCGCAAATGGACTTGCCGTCGA
CGGTGCGGGTGCAGATGACGTTGTCGCCAACGCTGCCGTAGGTCCAGCCG
CACTCTTCGTTGTGGACGATCTGGAGATCGACGCACTGCAGCCAGTCGGG
CAGTGGGCTGCCGTCGTAGGTGCCACCCCATCCGCAAGCGACGGCCCACC
ATTCGTTGTAGTTGTTGTAACGGTCGTTGTAGCTGGGGAGCTCCACCTTG
TTCACCATGTGCCAGAAGTCGACGTGGGGGATGCGGATCAGGGCGATATC
AGCGTTGGAATGCTTGATGAAGTTGCCGTTGCCAACGGTGTGGGTGAACT
GGGCGTTGGTGCGCCAGGTGGCACCGAAGTAAACGATCACGGAAGCGGCA
TCTCCGATGCAGTGCTCGGCAGTCAGGACCCAGTCGTGGGCGATGATGGA
GCCACCGCACCACCAGCCTCCGCTGAAGCCAAGACCCACAGTGTAGGGAG
CCTTACCCTCGGGGGCGGCGTATCCGTTGGTGATACGACCCCTCATCTTG
GTGGCCTTGGGCAGGTCCTTTACGA

BO13841.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:11:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG8871-PA 777 Jon25Biii-RA 102..774 691..19 3365 100 Minus
CG7118-PA 783 Jon66Ci-RA 337..531 453..259 525 90.7 Minus
CG7170-PA 789 Jon66Cii-RA 352..543 450..259 510 90.6 Minus
CG7118-PA 783 Jon66Ci-RA 133..241 660..552 270 89.9 Minus
CG7170-PA 789 Jon66Cii-RA 142..254 660..548 265 89.3 Minus
CG7170-PA 789 Jon66Cii-RA 699..758 103..44 225 95 Minus
CG8867-PA 801 Jon25Bi-RA 370..454 447..363 225 90.5 Minus
CG8867-PB 801 Jon25Bi-RB 370..454 447..363 225 90.5 Minus
CG31034-PA 798 Jon99Cii-RA 465..549 352..268 225 90.5 Minus
CG31362-PA 798 Jon99Ciii-RA 465..549 352..268 225 90.5 Minus
CG2229-PA 804 Jon99Fii-RA 380..452 443..371 215 91.7 Minus
CG8867-PA 801 Jon25Bi-RA 277..333 522..466 210 94.7 Minus
CG8867-PB 801 Jon25Bi-RB 277..333 522..466 210 94.7 Minus
CG18030-PA 804 Jon99Fi-RA 397..452 426..371 205 94.6 Minus
CG2229-PA 804 Jon99Fii-RA 471..533 352..290 190 92 Minus
CG18030-PA 804 Jon99Fi-RA 471..533 352..290 190 92 Minus
CG7170-PA 789 Jon66Cii-RA 271..312 531..490 185 97.6 Minus
CG7118-PA 783 Jon66Ci-RA 715..770 81..26 180 92.8 Minus
CG8867-PA 801 Jon25Bi-RA 181..230 618..569 175 94 Minus
CG8867-PB 801 Jon25Bi-RB 181..230 618..569 175 94 Minus
CG7118-PA 783 Jon66Ci-RA 259..300 531..490 160 95.2 Minus
CG8871-PA 777 Jon25Biii-RA 68..98 725..695 155 100 Minus
CG8867-PA 801 Jon25Bi-RA 132..173 661..620 135 92.8 Minus
CG8867-PB 801 Jon25Bi-RB 132..173 661..620 135 92.8 Minus
CG18180-PA 795 CG18180-RA 518..549 299..268 135 96.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 12:06:58
Subject Length Description Subject Range Query Range Score Percent Strand
Jon25Biii-RA 827 CG8871-RA 87..793 725..19 3490 99.7 Minus
Jon66Cii-RA 830 CG7170-RA 114..786 691..19 1715 83.8 Minus
Jon66Ci-RA 838 CG7118-RA 91..795 720..19 1495 81.3 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 12:06:49
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 4949975..4950681 19..725 3490 99.6 Plus
3L 28110227 3L 8392864..8393536 19..691 1715 83.7 Plus
3L 28110227 3L 8391630..8392334 720..19 1445 80.9 Minus
3R 32079331 3R 30487103..30487528 19..447 685 77.9 Plus
2L 23513712 2L 4954633..4955051 326..720 615 77.6 Plus
2L 23513712 2L 4952287..4952494 19..226 335 77.4 Plus
3L 28110227 3L 9641508..9641703 343..145 285 77.4 Minus
3L 28110227 3L 6052754..6052858 447..343 270 83.8 Minus
3L 28110227 3L 6053956..6054059 344..447 235 81.7 Plus
3L 28110227 3L 9639814..9639972 303..145 180 74.2 Minus
Blast to na_te.dros performed on 2015-02-06 12:06:54 has no hits.

BO13841.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:13:30 Download gff for BO13841.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8871-PA 69..777 15..724 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:03:29 Download gff for BO13841.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8871-PA 69..777 15..724 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 06:57:33 Download gff for BO13841.3prime
Subject Subject Range Query Range Percent Splice Strand
Jon25Biii-RA 88..804 7..724 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:38:35 Download gff for BO13841.3prime
Subject Subject Range Query Range Percent Splice Strand
Jon25Biii-RA 88..804 7..724 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:38:35 Download gff for BO13841.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 4949964..4950680 7..724 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 06:57:33 Download gff for BO13841.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 4949964..4950680 7..724 99   Plus

BO13841.5prime Sequence

806 bp (750 high quality bases) assembled on 2006-05-08

> BO13841.5prime
GAAGTTATCAGTCGACATGAAGGTGTTCCTAGCTATCCTGGCTCTGGCCG
TGGCTTCGGCCTCCGCCTTCGACGAGAAGGTCTTCGTAAAGGACCTGCCC
AAGGCCACCAAGATTGAGGGTCGTATCACCAACGGATACGCCGCCCCCGA
GGGTAAGGCTCCCTACACTGTGGGTCTTGGCTTCAGCGGAGGCTGGTGGT
GCGGTGGCTCCATCATCGCCCACGACTGGGTCCTGACTGCCGAGCACTGC
ATCGGAGATGCCGCTTCCGTGATCGTTTACTTCGGTGCCACCTGGCGCAC
CAACGCCCAGTTCACCCACACCGTTGGCAACGGCAACTTCATCAAGCATT
CCAACGCTGATATCGCCCTGATCCGCATCCCCCACGTCGACTTCTGGCAC
ATGGTGAACAAGGTGGAGCTCCCCAGCTACAACGACCGTTACAACAACTA
CAACGAATGGTGGGCCGTCGCTTGCGGATGGGGTGGCACCTACGACGGCA
GCCCACTGCCCGACTGGCTGCAGTGCGTCGATCTCCAGATCGTCCACAAC
GAAGAGTGCGGCTGGACCTACGGCAGCGTTGGCGACAACGTCATCTGCAC
CCGCACCGTCGACGGCAAGTCCATTTGCGGAGGTGACTCTGGCGGTCCCC
TTGTCACACACGACGGCTCCAAGCTGGTGGGAGTTAGCAACTTCGTCTCC
TCCAACGGCTGCCAGTCGGGTGCTCCTGCTGGATTCCAGCGCGTCACCTA
CCACTTGGACTGGATCCGTGACCCCACTGGCATCTCTTACGCAAGCTTTC
TAGACC

BO13841.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:11:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG8871-PA 777 Jon25Biii-RA 1..774 17..790 3845 99.8 Plus
CG7118-PA 783 Jon66Ci-RA 337..531 356..550 525 90.7 Plus
CG7170-PA 789 Jon66Cii-RA 352..543 359..550 510 90.6 Plus
CG7118-PA 783 Jon66Ci-RA 133..241 149..257 270 89.9 Plus
CG7170-PA 789 Jon66Cii-RA 142..254 149..261 265 89.3 Plus
CG7170-PA 789 Jon66Cii-RA 699..758 706..765 225 95 Plus
CG8867-PA 801 Jon25Bi-RA 370..454 362..446 225 90.5 Plus
CG8867-PB 801 Jon25Bi-RB 370..454 362..446 225 90.5 Plus
CG31034-PA 798 Jon99Cii-RA 465..549 457..541 225 90.5 Plus
CG31362-PA 798 Jon99Ciii-RA 465..549 457..541 225 90.5 Plus
CG2229-PA 804 Jon99Fii-RA 380..452 366..438 215 91.7 Plus
CG8867-PA 801 Jon25Bi-RA 277..333 287..343 210 94.7 Plus
CG8867-PB 801 Jon25Bi-RB 277..333 287..343 210 94.7 Plus
CG18030-PA 804 Jon99Fi-RA 397..452 383..438 205 94.6 Plus
CG2229-PA 804 Jon99Fii-RA 471..533 457..519 190 92 Plus
CG18030-PA 804 Jon99Fi-RA 471..533 457..519 190 92 Plus
CG7170-PA 789 Jon66Cii-RA 271..312 278..319 185 97.6 Plus
CG8867-PA 801 Jon25Bi-RA 181..230 191..240 175 94 Plus
CG8867-PB 801 Jon25Bi-RB 181..230 191..240 175 94 Plus
CG7118-PA 783 Jon66Ci-RA 259..300 278..319 160 95.2 Plus
CG7118-PA 783 Jon66Ci-RA 715..760 728..773 155 93.4 Plus
CG8867-PA 801 Jon25Bi-RA 132..173 148..189 135 92.8 Plus
CG8867-PB 801 Jon25Bi-RB 132..173 148..189 135 92.8 Plus
CG18180-PA 795 CG18180-RA 518..549 510..541 135 96.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 08:44:55
Subject Length Description Subject Range Query Range Score Percent Strand
Jon25Biii-RA 827 CG8871-RA 19..793 16..790 3860 99.9 Plus
Jon66Cii-RA 830 CG7170-RA 113..786 117..790 1705 83.7 Plus
Jon66Ci-RA 838 CG7118-RA 17..795 15..790 1590 80.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 08:44:45
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 4949975..4950749 790..16 3860 99.9 Minus
3L 28110227 3L 8392864..8393537 790..117 1705 83.5 Minus
3L 28110227 3L 8391556..8392334 15..790 1515 80.2 Plus
3R 32079331 3R 30487103..30487528 790..362 670 77.6 Minus
2L 23513712 2L 4954633..4955051 483..89 615 77.6 Minus
2L 23513712 2L 4952287..4952494 790..583 320 76.9 Minus
3L 28110227 3L 9641508..9641703 466..664 285 77.4 Plus
3L 28110227 3L 6052754..6052858 362..466 270 83.8 Plus
3L 28110227 3L 6053956..6054059 465..362 235 81.7 Minus
Blast to na_te.dros performed on 2015-02-09 08:44:51 has no hits.

BO13841.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:13:31 Download gff for BO13841.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8871-PA 1..777 17..794 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:03:30 Download gff for BO13841.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8871-PA 1..777 17..794 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 18:12:52 Download gff for BO13841.5prime
Subject Subject Range Query Range Percent Splice Strand
Jon25Biii-RA 13..804 9..802 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 11:42:54 Download gff for BO13841.5prime
Subject Subject Range Query Range Percent Splice Strand
Jon25Biii-RA 13..804 9..802 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 11:42:54 Download gff for BO13841.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 4949964..4950755 9..802 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 18:12:52 Download gff for BO13841.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 4949964..4950755 9..802 98   Minus

BO13841.complete Sequence

808 bp assembled on 2006-10-11

GenBank Submission: FJ632945

> BO13841.complete
GAAGTTATCAGTCGACATGAAGGTGTTCCTAGCTATCCTGGCTCTGGCCG
TGGCTTCGGCCTCCGCCTTCGACGAGAAGGTCTTCGTAAAGGACCTGCCC
AAGGCCACCAAGATTGAGGGTCGTATCACCAACGGATACGCCGCCCCCGA
GGGTAAGGCTCCCTACACTGTGGGTCTTGGCTTCAGCGGAGGCTGGTGGT
GCGGTGGCTCCATCATCGCCCACGACTGGGTCCTGACTGCCGAGCACTGC
ATCGGAGATGCCGCTTCCGTGATCGTTTACTTCGGTGCCACCTGGCGCAC
CAACGCCCAGTTCACCCACACCGTTGGCAACGGCAACTTCATCAAGCATT
CCAACGCTGATATCGCCCTGATCCGCATCCCCCACGTCGACTTCTGGCAC
ATGGTGAACAAGGTGGAGCTCCCCAGCTACAACGACCGTTACAACAACTA
CAACGAATGGTGGGCCGTCGCTTGCGGATGGGGTGGCACCTACGACGGCA
GCCCACTGCCCGACTGGCTGCAGTGCGTCGATCTCCAGATCGTCCACAAC
GAAGAGTGCGGCTGGACCTACGGCAGCGTTGGCGACAACGTCATCTGCAC
CCGCACCGTCGACGGCAAGTCCATTTGCGGAGGTGACTCTGGCGGTCCCC
TTGTCACACACGACGGCTCCAAGCTGGTGGGAGTTAGCAACTTCGTCTCC
TCCAACGGCTGCCAGTCGGGTGCTCCTGCTGGATTCCAGCGCGTCACCTA
CCACTTGGACTGGATCCGTGACCACACTGGCATCTCTTACGCAAGCTTTC
TAGACCAT

BO13841.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:57:08
Subject Length Description Subject Range Query Range Score Percent Strand
Jon25Biii-RA 777 CG8871-PA 1..774 17..790 3870 100 Plus
Jon66Cii-RA 789 CG7170-PA 110..783 117..790 1720 83.7 Plus
Jon66Ci-RA 783 CG7118-PA 1..777 17..790 1520 80.3 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:57:09
Subject Length Description Subject Range Query Range Score Percent Strand
Jon25Biii-RA 827 CG8871-RA 19..793 16..790 3875 100 Plus
Jon66Cii-RA 830 CG7170-RA 113..786 117..790 1720 83.7 Plus
Jon66Ci-RA 838 CG7118-RA 17..795 15..790 1530 80.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:57:06
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 4949975..4950749 790..16 3875 100 Minus
3L 28110227 3L 8392864..8393537 790..117 1720 83.7 Minus
3L 28110227 3L 8391556..8392334 15..790 1530 80.3 Plus
3R 32079331 3R 30487103..30487528 790..362 685 77.9 Minus
3R 32079331 3R 30489363..30489788 362..790 670 77.6 Plus
3R 32079331 3R 29923793..29924218 790..362 640 77.2 Minus
3R 32079331 3R 29922611..29923036 362..790 625 76.9 Plus
2L 23513712 2L 4954633..4955051 483..89 615 77.6 Minus
2L 23513712 2L 4952287..4952494 790..583 335 77.4 Minus
2R 25286936 2R 8691847..8691969 362..484 315 83.7 Plus
3L 28110227 3L 9641508..9641703 466..664 285 77.4 Plus
3L 28110227 3L 6052754..6052858 362..466 270 83.8 Plus
3L 28110227 3L 6053956..6054059 465..362 235 81.7 Minus
Blast to na_te.dros performed on 2014-11-27 13:57:07 has no hits.

BO13841.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:44:21 Download gff for BO13841.complete
Subject Subject Range Query Range Percent Splice Strand
Jon25Biii-RA 1..777 17..794 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:58:16 Download gff for BO13841.complete
Subject Subject Range Query Range Percent Splice Strand
Jon25Biii-RA 9..800 9..802 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:36:29 Download gff for BO13841.complete
Subject Subject Range Query Range Percent Splice Strand
Jon25Biii-RA 20..793 17..792 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:44:21 Download gff for BO13841.complete
Subject Subject Range Query Range Percent Splice Strand
Jon25Biii-RA 9..800 9..802 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:30:36 Download gff for BO13841.complete
Subject Subject Range Query Range Percent Splice Strand
Jon25Biii-RA 20..793 17..792 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:30:36 Download gff for BO13841.complete
Subject Subject Range Query Range Percent Splice Strand
2L 4949973..4950748 17..792 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:36:29 Download gff for BO13841.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 4949973..4950748 17..792 99   Minus

BO13841.pep Sequence

Translation from 16 to 808

> BO13841.pep
MKVFLAILALAVASASAFDEKVFVKDLPKATKIEGRITNGYAAPEGKAPY
TVGLGFSGGWWCGGSIIAHDWVLTAEHCIGDAASVIVYFGATWRTNAQFT
HTVGNGNFIKHSNADIALIRIPHVDFWHMVNKVELPSYNDRYNNYNEWWA
VACGWGGTYDGSPLPDWLQCVDLQIVHNEECGWTYGSVGDNVICTRTVDG
KSICGGDSGGPLVTHDGSKLVGVSNFVSSNGCQSGAPAGFQRVTYHLDWI
RDHTGISYASFLDH

BO13841.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:39:19
Subject Length Description Subject Range Query Range Score Percent Strand
Jon25Biii-PA 258 CG8871-PA 1..258 1..258 1435 100 Plus
Jon66Cii-PA 262 CG7170-PA 1..261 1..258 1192 83.5 Plus
Jon66Ci-PA 260 CG7118-PA 1..259 1..258 1179 82.3 Plus
Jon25Bi-PB 266 CG8867-PB 1..265 1..258 951 66.7 Plus
Jon99Fi-PA 267 CG18030-PA 4..267 5..258 873 63.4 Plus