Clone Sequence Records
BO13843.3prime Sequence
826 bp (760 high quality bases) assembled on 2006-05-08
> BO13843.3prime
ATGGTCTAGAAAGCTTGCGTAGCGACTGCGACTCCGGCTGCGGCAATGTC
GCTCGCGGCTGTCATGGCGGTAGTGATTATGGTTGTGATTATGATGGCTC
CGGTTGCTCCGACTGCTTCCACCACCTCCTCCGCCGCCAACTCCTACACC
GCCGCCACCACCGCCACTGCGCGAATACGAGTGATGGGAGCTGTGGTGCG
ATTTATGGTGATGGTGACGTCGATCCGAGGGCTGGCGATTCTGAACATAG
TCGCGACTTCGCTCGCGGTACTCACTGCGTGGCTCGCGTCTGCTATCGTA
GGAGTGGAAGCGCTGCACTCGACCCTCACGTCGACGTCGTTCCTCCTGCT
CGCGCTCCTTCTGTCGCGCCTCGTTGATCTCGGCGACGGCGTTGCGCAGT
TTGGAGTAGCCCAGATGCTGTTTACCCATCAAATGGTCCTCGATCCGCTG
CTGTGCATCGCCGACTATCAGGAAAGCGCCACAGATTTCGCACACCTTCA
TTTGTTTCTCGGGCATGGCATCATGCGACCAGCCAGCCGCCTTGCTATCC
GTCTTCTCTGACGTTTTGTCCTCGCTGGCTGCACCAGCTGCTTCACCGGC
ATCGTCAGTCGTTGTGACAGCTGCTTGTGCGGAACTTGGAGCTGCATCCG
GCGCTTCATCTAGCGTGGTGGCGGCTGGAAGAGGAGTAGTTGGACTTTCT
TCGCTGGGATTTGTGACCGGACTGCTGCGCGGGTGATGCTGCAGCTCGTC
CTCCGCTGACTTGGTCAGGCTGATGCTGCTGATGGCCTTGTGATGGGCCT
CGTATTGCTGTACCAACTGTTCCTTC
BO13843.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:11:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3198-PA | 1317 | CG3198-RA | 507..1314 | 826..19 | 4040 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:21:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3198-RA | 4996 | CG3198-RA | 742..1549 | 826..19 | 4040 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:21:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 6672620..6673159 | 287..826 | 2700 | 100 | Plus |
X | 23542271 | X | 6671986..6672179 | 19..212 | 970 | 100 | Plus |
X | 23542271 | X | 6672262..6672336 | 213..287 | 375 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 18:21:32 has no hits.
BO13843.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:13:32 Download gff for
BO13843.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3198-PA | 507..1317 | 18..826 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:03:31 Download gff for
BO13843.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3198-PA | 507..1317 | 18..826 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:57:45 Download gff for
BO13843.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3198-RA | 742..1549 | 19..826 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:52:03 Download gff for
BO13843.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3198-RA | 742..1549 | 19..826 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:52:03 Download gff for
BO13843.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 6671986..6672179 | 19..212 | 100 | <- | Plus |
X | 6672262..6672335 | 213..286 | 100 | <- | Plus |
X | 6672620..6673159 | 287..826 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:57:45 Download gff for
BO13843.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 6566019..6566212 | 19..212 | 100 | <- | Plus |
arm_X | 6566295..6566368 | 213..286 | 100 | <- | Plus |
arm_X | 6566653..6567192 | 287..826 | 100 | | Plus |
BO13843.5prime Sequence
898 bp (788 high quality bases) assembled on 2006-05-08
> BO13843.5prime
GAAGTTATCAGTCGACATGGTGGACGCCGCCAGGCAGATGCTCGACGAGC
TGATGGGCAGGAATCGCAACCTGCATCCCTCGGAGGCGGGCGCCAAGGTC
AATTGGGAGGATCCGGAGTTCTGTCAGTTCTACAACGTTAAGTTCTGTCC
GCACGATCTATTCATAAATACGCGCGCAGATCTGGGCCCCTGTGCCCGCA
TCCACGACGAGGAAGCCCGACATCTCTACGAGGATGCTCGACCCTCGCAG
CGGAAGCGTCAGTACGAGGATGAATTCCTGCGCTTTTGCAATGTTATGCT
GCACGATGTGGATCGAAAGATCCAGAAGGGAAAACAGCGTTTGCTGCTAA
TGCAAAGGGATCAGCCCAATGTACCGGCGCCACTGAGCAGGCACCAGGAG
CAGCTTGCGAATCTGACGGCCCGGATCAATAAGCTGCTCTCTGAGGCAGA
GGAAGCCGGCATTCGGGGTGACGTGGACCAGGCCCAAGATCTAATGACCG
TGTGCGAGGAGCTCAAGGAGGAGAAGGAACAGTTGGTACAGCAATACGAG
GCCCATCACAAGGCCATCAGCAGCATCAGCCTGACCAAGTCAGCGGAGGA
CGAGCTGCAGCATCACCCGCGCAGCAGTCCGGTCACAAATCCCAGCGAAG
AAAGTCCAACTACTCCTCTTCCAGCCGCCACCACGCTAGATGAAGCGCCG
GATGCAGCTCCAAGTTCCGCACAAGCAGCTGTCACAACGACTGACGATGC
CGGTGAAGCAGCTGGTGCAGCCAGCGAGGACAAAACGTCAGAGAAGACGG
ATAGCAAGGCGGCTGGCTGGTCGCATGATGCCATGCCCGAGAAACAAATG
AAGGTGTGCGAAATCTGTGGCGCTTTCCTGATAGTCGGCGATGCACAG
BO13843.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:11:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3198-PA | 1317 | CG3198-RA | 1..882 | 17..898 | 4410 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 09:29:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3198-RA | 4996 | CG3198-RA | 236..1117 | 17..898 | 4410 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 09:29:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 6672784..6673570 | 898..112 | 3920 | 99.9 | Minus |
X | 23542271 | X | 6673637..6673738 | 118..17 | 510 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-02 09:29:27 has no hits.
BO13843.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:13:33 Download gff for
BO13843.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3198-PA | 1..882 | 17..898 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:03:33 Download gff for
BO13843.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3198-PA | 1..882 | 17..898 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 03:54:19 Download gff for
BO13843.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3198-RA | 236..1117 | 17..898 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:15:16 Download gff for
BO13843.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3198-RA | 236..1117 | 17..898 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 12:15:16 Download gff for
BO13843.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 6672784..6673563 | 119..898 | 100 | <- | Minus |
X | 6673637..6673738 | 17..118 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 03:54:19 Download gff for
BO13843.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 6566817..6567596 | 119..898 | 100 | <- | Minus |
arm_X | 6567670..6567771 | 17..118 | 100 | | Minus |
BO13843.complete Sequence
1348 bp assembled on 2006-10-11
GenBank Submission: FJ632946
> BO13843.complete
GAAGTTATCAGTCGACATGGTGGACGCCGCCAGGCAGATGCTCGACGAGC
TGATGGGCAGGAATCGCAACCTGCATCCCTCGGAGGCGGGCGCCAAGGTC
AATTGGGAGGATCCGGAGTTCTGTCAGTTCTACAACGTTAAGTTCTGTCC
GCACGATCTATTCATAAATACGCGCGCAGATCTGGGCCCCTGTGCCCGCA
TCCACGACGAGGAAGCCCGACATCTCTACGAGGATGCTCGACCCTCGCAG
CGGAAGCGTCAGTACGAGGATGAATTCCTGCGCTTTTGCAATGTTATGCT
GCACGATGTGGATCGAAAGATCCAGAAGGGAAAACAGCGTTTGCTGCTAA
TGCAAAGGGATCAGCCCAATGTACCGGCGCCACTGAGCAGGCACCAGGAG
CAGCTTGCGAATCTGACGGCCCGGATCAATAAGCTGCTCTCTGAGGCAGA
GGAAGCCGGCATTCGGGGTGACGTGGACCAGGCCCAAGATCTAATGACCG
TGTGCGAGGAGCTCAAGGAGGAGAAGGAACAGTTGGTACAGCAATACGAG
GCCCATCACAAGGCCATCAGCAGCATCAGCCTGACCAAGTCAGCGGAGGA
CGAGCTGCAGCATCACCCGCGCAGCAGTCCGGTCACAAATCCCAGCGAAG
AAAGTCCAACTACTCCTCTTCCAGCCGCCACCACGCTAGATGAAGCGCCG
GATGCAGCTCCAAGTTCCGCACAAGCAGCTGTCACAACGACTGACGATGC
CGGTGAAGCAGCTGGTGCAGCCAGCGAGGACAAAACGTCAGAGAAGACGG
ATAGCAAGGCGGCTGGCTGGTCGCATGATGCCATGCCCGAGAAACAAATG
AAGGTGTGCGAAATCTGTGGCGCTTTCCTGATAGTCGGCGATGCACAGCA
GCGGATCGAGGACCATTTGATGGGTAAACAGCATCTGGGCTACTCCAAAC
TGCGCAACGCCGTCGCCGAGATCAACGAGGCGCGACAGAAGGAGCGCGAG
CAGGAGGAACGACGTCGACGTGAGGGTCGAGTGCAGCGCTTCCACTCCTA
CGATAGCAGACGCGAGCCACGCAGTGAGTACCGCGAGCGAAGTCGCGACT
ATGTTCAGAATCGCCAGCCCTCGGATCGACGTCACCATCACCATAAATCG
CACCACAGCTCCCATCACTCGTATTCGCGCAGTGGCGGTGGTGGCGGCGG
TGTAGGAGTTGGCGGCGGAGGAGGTGGTGGAAGCAGTCGGAGCAACCGGA
GCCATCATAATCACAACCATAATCACTACCGCCATGACAGCCGCGAGCGA
CATTGCCGCAGCCGGAGTCGCAGTCGCTACGCAAGCTTTCTAGACCAT
BO13843.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:36:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3198-RA | 1317 | CG3198-PA | 1..1314 | 17..1330 | 6570 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:36:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3198-RA | 4996 | CG3198-RA | 236..1549 | 17..1330 | 6570 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:36:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 6672620..6673570 | 1062..112 | 4740 | 99.9 | Minus |
X | 23542271 | X | 6671986..6672179 | 1330..1137 | 970 | 100 | Minus |
X | 23542271 | X | 6673637..6673738 | 118..17 | 510 | 100 | Minus |
X | 23542271 | X | 6672262..6672336 | 1136..1062 | 375 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:36:18 has no hits.
BO13843.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:44:22 Download gff for
BO13843.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3198-RA | 1..1317 | 17..1331 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:58:18 Download gff for
BO13843.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3198-RA | 232..1545 | 17..1330 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:19:49 Download gff for
BO13843.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3198-RA | 236..1549 | 17..1332 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:44:22 Download gff for
BO13843.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3198-RA | 232..1545 | 17..1330 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:51:40 Download gff for
BO13843.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3198-RA | 236..1549 | 17..1332 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:51:40 Download gff for
BO13843.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 6671984..6672179 | 1137..1332 | 98 | <- | Minus |
X | 6672262..6672335 | 1063..1136 | 100 | <- | Minus |
X | 6672620..6673563 | 119..1062 | 100 | <- | Minus |
X | 6673637..6673738 | 17..118 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:19:49 Download gff for
BO13843.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 6566295..6566368 | 1063..1136 | 100 | <- | Minus |
arm_X | 6566017..6566212 | 1137..1332 | 98 | <- | Minus |
arm_X | 6566653..6567596 | 119..1062 | 100 | <- | Minus |
arm_X | 6567670..6567771 | 17..118 | 100 | | Minus |
BO13843.pep Sequence
Translation from 16 to 1348
> BO13843.pep
MVDAARQMLDELMGRNRNLHPSEAGAKVNWEDPEFCQFYNVKFCPHDLFI
NTRADLGPCARIHDEEARHLYEDARPSQRKRQYEDEFLRFCNVMLHDVDR
KIQKGKQRLLLMQRDQPNVPAPLSRHQEQLANLTARINKLLSEAEEAGIR
GDVDQAQDLMTVCEELKEEKEQLVQQYEAHHKAISSISLTKSAEDELQHH
PRSSPVTNPSEESPTTPLPAATTLDEAPDAAPSSAQAAVTTTDDAGEAAG
AASEDKTSEKTDSKAAGWSHDAMPEKQMKVCEICGAFLIVGDAQQRIEDH
LMGKQHLGYSKLRNAVAEINEARQKEREQEERRRREGRVQRFHSYDSRRE
PRSEYRERSRDYVQNRQPSDRRHHHHKSHHSSHHSYSRSGGGGGGVGVGG
GGGGGSSRSNRSHHNHNHNHYRHDSRERHCRSRSRSRYASFLDH
BO13843.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:39:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3198-PA | 438 | CG3198-PA | 1..438 | 1..438 | 2330 | 100 | Plus |
CG7564-PD | 420 | CG7564-PD | 12..178 | 3..177 | 238 | 32.6 | Plus |
CG7564-PB | 420 | CG7564-PB | 12..178 | 3..177 | 238 | 32.6 | Plus |
CG7564-PC | 420 | CG7564-PC | 12..178 | 3..177 | 238 | 32.6 | Plus |
CG7564-PA | 420 | CG7564-PA | 12..178 | 3..177 | 238 | 32.6 | Plus |
CG7564-PD | 420 | CG7564-PD | 150..361 | 244..438 | 158 | 25.2 | Plus |
CG7564-PB | 420 | CG7564-PB | 150..361 | 244..438 | 158 | 25.2 | Plus |
CG7564-PC | 420 | CG7564-PC | 150..361 | 244..438 | 158 | 25.2 | Plus |