Clone BO13843 Report

Search the DGRC for BO13843

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:138
Well:43
Vector:pDNR-Dual
Associated Gene/TranscriptCG3198-RA
Protein status:BO13843.pep: validated full length
Sequenced Size:1348

Clone Sequence Records

BO13843.3prime Sequence

826 bp (760 high quality bases) assembled on 2006-05-08

> BO13843.3prime
ATGGTCTAGAAAGCTTGCGTAGCGACTGCGACTCCGGCTGCGGCAATGTC
GCTCGCGGCTGTCATGGCGGTAGTGATTATGGTTGTGATTATGATGGCTC
CGGTTGCTCCGACTGCTTCCACCACCTCCTCCGCCGCCAACTCCTACACC
GCCGCCACCACCGCCACTGCGCGAATACGAGTGATGGGAGCTGTGGTGCG
ATTTATGGTGATGGTGACGTCGATCCGAGGGCTGGCGATTCTGAACATAG
TCGCGACTTCGCTCGCGGTACTCACTGCGTGGCTCGCGTCTGCTATCGTA
GGAGTGGAAGCGCTGCACTCGACCCTCACGTCGACGTCGTTCCTCCTGCT
CGCGCTCCTTCTGTCGCGCCTCGTTGATCTCGGCGACGGCGTTGCGCAGT
TTGGAGTAGCCCAGATGCTGTTTACCCATCAAATGGTCCTCGATCCGCTG
CTGTGCATCGCCGACTATCAGGAAAGCGCCACAGATTTCGCACACCTTCA
TTTGTTTCTCGGGCATGGCATCATGCGACCAGCCAGCCGCCTTGCTATCC
GTCTTCTCTGACGTTTTGTCCTCGCTGGCTGCACCAGCTGCTTCACCGGC
ATCGTCAGTCGTTGTGACAGCTGCTTGTGCGGAACTTGGAGCTGCATCCG
GCGCTTCATCTAGCGTGGTGGCGGCTGGAAGAGGAGTAGTTGGACTTTCT
TCGCTGGGATTTGTGACCGGACTGCTGCGCGGGTGATGCTGCAGCTCGTC
CTCCGCTGACTTGGTCAGGCTGATGCTGCTGATGGCCTTGTGATGGGCCT
CGTATTGCTGTACCAACTGTTCCTTC

BO13843.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:11:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG3198-PA 1317 CG3198-RA 507..1314 826..19 4040 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:21:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG3198-RA 4996 CG3198-RA 742..1549 826..19 4040 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:21:28
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 6672620..6673159 287..826 2700 100 Plus
X 23542271 X 6671986..6672179 19..212 970 100 Plus
X 23542271 X 6672262..6672336 213..287 375 100 Plus
Blast to na_te.dros performed on 2015-02-10 18:21:32 has no hits.

BO13843.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:13:32 Download gff for BO13843.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3198-PA 507..1317 18..826 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:03:31 Download gff for BO13843.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3198-PA 507..1317 18..826 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:57:45 Download gff for BO13843.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3198-RA 742..1549 19..826 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:52:03 Download gff for BO13843.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3198-RA 742..1549 19..826 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:52:03 Download gff for BO13843.3prime
Subject Subject Range Query Range Percent Splice Strand
X 6671986..6672179 19..212 100 <- Plus
X 6672262..6672335 213..286 100 <- Plus
X 6672620..6673159 287..826 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:57:45 Download gff for BO13843.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 6566019..6566212 19..212 100 <- Plus
arm_X 6566295..6566368 213..286 100 <- Plus
arm_X 6566653..6567192 287..826 100   Plus

BO13843.5prime Sequence

898 bp (788 high quality bases) assembled on 2006-05-08

> BO13843.5prime
GAAGTTATCAGTCGACATGGTGGACGCCGCCAGGCAGATGCTCGACGAGC
TGATGGGCAGGAATCGCAACCTGCATCCCTCGGAGGCGGGCGCCAAGGTC
AATTGGGAGGATCCGGAGTTCTGTCAGTTCTACAACGTTAAGTTCTGTCC
GCACGATCTATTCATAAATACGCGCGCAGATCTGGGCCCCTGTGCCCGCA
TCCACGACGAGGAAGCCCGACATCTCTACGAGGATGCTCGACCCTCGCAG
CGGAAGCGTCAGTACGAGGATGAATTCCTGCGCTTTTGCAATGTTATGCT
GCACGATGTGGATCGAAAGATCCAGAAGGGAAAACAGCGTTTGCTGCTAA
TGCAAAGGGATCAGCCCAATGTACCGGCGCCACTGAGCAGGCACCAGGAG
CAGCTTGCGAATCTGACGGCCCGGATCAATAAGCTGCTCTCTGAGGCAGA
GGAAGCCGGCATTCGGGGTGACGTGGACCAGGCCCAAGATCTAATGACCG
TGTGCGAGGAGCTCAAGGAGGAGAAGGAACAGTTGGTACAGCAATACGAG
GCCCATCACAAGGCCATCAGCAGCATCAGCCTGACCAAGTCAGCGGAGGA
CGAGCTGCAGCATCACCCGCGCAGCAGTCCGGTCACAAATCCCAGCGAAG
AAAGTCCAACTACTCCTCTTCCAGCCGCCACCACGCTAGATGAAGCGCCG
GATGCAGCTCCAAGTTCCGCACAAGCAGCTGTCACAACGACTGACGATGC
CGGTGAAGCAGCTGGTGCAGCCAGCGAGGACAAAACGTCAGAGAAGACGG
ATAGCAAGGCGGCTGGCTGGTCGCATGATGCCATGCCCGAGAAACAAATG
AAGGTGTGCGAAATCTGTGGCGCTTTCCTGATAGTCGGCGATGCACAG

BO13843.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:11:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG3198-PA 1317 CG3198-RA 1..882 17..898 4410 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 09:29:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG3198-RA 4996 CG3198-RA 236..1117 17..898 4410 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 09:29:23
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 6672784..6673570 898..112 3920 99.9 Minus
X 23542271 X 6673637..6673738 118..17 510 100 Minus
Blast to na_te.dros performed on 2015-02-02 09:29:27 has no hits.

BO13843.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:13:33 Download gff for BO13843.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3198-PA 1..882 17..898 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:03:33 Download gff for BO13843.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3198-PA 1..882 17..898 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 03:54:19 Download gff for BO13843.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3198-RA 236..1117 17..898 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:15:16 Download gff for BO13843.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3198-RA 236..1117 17..898 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 12:15:16 Download gff for BO13843.5prime
Subject Subject Range Query Range Percent Splice Strand
X 6672784..6673563 119..898 100 <- Minus
X 6673637..6673738 17..118 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 03:54:19 Download gff for BO13843.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 6566817..6567596 119..898 100 <- Minus
arm_X 6567670..6567771 17..118 100   Minus

BO13843.complete Sequence

1348 bp assembled on 2006-10-11

GenBank Submission: FJ632946

> BO13843.complete
GAAGTTATCAGTCGACATGGTGGACGCCGCCAGGCAGATGCTCGACGAGC
TGATGGGCAGGAATCGCAACCTGCATCCCTCGGAGGCGGGCGCCAAGGTC
AATTGGGAGGATCCGGAGTTCTGTCAGTTCTACAACGTTAAGTTCTGTCC
GCACGATCTATTCATAAATACGCGCGCAGATCTGGGCCCCTGTGCCCGCA
TCCACGACGAGGAAGCCCGACATCTCTACGAGGATGCTCGACCCTCGCAG
CGGAAGCGTCAGTACGAGGATGAATTCCTGCGCTTTTGCAATGTTATGCT
GCACGATGTGGATCGAAAGATCCAGAAGGGAAAACAGCGTTTGCTGCTAA
TGCAAAGGGATCAGCCCAATGTACCGGCGCCACTGAGCAGGCACCAGGAG
CAGCTTGCGAATCTGACGGCCCGGATCAATAAGCTGCTCTCTGAGGCAGA
GGAAGCCGGCATTCGGGGTGACGTGGACCAGGCCCAAGATCTAATGACCG
TGTGCGAGGAGCTCAAGGAGGAGAAGGAACAGTTGGTACAGCAATACGAG
GCCCATCACAAGGCCATCAGCAGCATCAGCCTGACCAAGTCAGCGGAGGA
CGAGCTGCAGCATCACCCGCGCAGCAGTCCGGTCACAAATCCCAGCGAAG
AAAGTCCAACTACTCCTCTTCCAGCCGCCACCACGCTAGATGAAGCGCCG
GATGCAGCTCCAAGTTCCGCACAAGCAGCTGTCACAACGACTGACGATGC
CGGTGAAGCAGCTGGTGCAGCCAGCGAGGACAAAACGTCAGAGAAGACGG
ATAGCAAGGCGGCTGGCTGGTCGCATGATGCCATGCCCGAGAAACAAATG
AAGGTGTGCGAAATCTGTGGCGCTTTCCTGATAGTCGGCGATGCACAGCA
GCGGATCGAGGACCATTTGATGGGTAAACAGCATCTGGGCTACTCCAAAC
TGCGCAACGCCGTCGCCGAGATCAACGAGGCGCGACAGAAGGAGCGCGAG
CAGGAGGAACGACGTCGACGTGAGGGTCGAGTGCAGCGCTTCCACTCCTA
CGATAGCAGACGCGAGCCACGCAGTGAGTACCGCGAGCGAAGTCGCGACT
ATGTTCAGAATCGCCAGCCCTCGGATCGACGTCACCATCACCATAAATCG
CACCACAGCTCCCATCACTCGTATTCGCGCAGTGGCGGTGGTGGCGGCGG
TGTAGGAGTTGGCGGCGGAGGAGGTGGTGGAAGCAGTCGGAGCAACCGGA
GCCATCATAATCACAACCATAATCACTACCGCCATGACAGCCGCGAGCGA
CATTGCCGCAGCCGGAGTCGCAGTCGCTACGCAAGCTTTCTAGACCAT

BO13843.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:36:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG3198-RA 1317 CG3198-PA 1..1314 17..1330 6570 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:36:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG3198-RA 4996 CG3198-RA 236..1549 17..1330 6570 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:36:17
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 6672620..6673570 1062..112 4740 99.9 Minus
X 23542271 X 6671986..6672179 1330..1137 970 100 Minus
X 23542271 X 6673637..6673738 118..17 510 100 Minus
X 23542271 X 6672262..6672336 1136..1062 375 100 Minus
Blast to na_te.dros performed on 2014-11-27 13:36:18 has no hits.

BO13843.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:44:22 Download gff for BO13843.complete
Subject Subject Range Query Range Percent Splice Strand
CG3198-RA 1..1317 17..1331 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:58:18 Download gff for BO13843.complete
Subject Subject Range Query Range Percent Splice Strand
CG3198-RA 232..1545 17..1330 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:19:49 Download gff for BO13843.complete
Subject Subject Range Query Range Percent Splice Strand
CG3198-RA 236..1549 17..1332 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:44:22 Download gff for BO13843.complete
Subject Subject Range Query Range Percent Splice Strand
CG3198-RA 232..1545 17..1330 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:51:40 Download gff for BO13843.complete
Subject Subject Range Query Range Percent Splice Strand
CG3198-RA 236..1549 17..1332 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:51:40 Download gff for BO13843.complete
Subject Subject Range Query Range Percent Splice Strand
X 6671984..6672179 1137..1332 98 <- Minus
X 6672262..6672335 1063..1136 100 <- Minus
X 6672620..6673563 119..1062 100 <- Minus
X 6673637..6673738 17..118 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:19:49 Download gff for BO13843.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 6566295..6566368 1063..1136 100 <- Minus
arm_X 6566017..6566212 1137..1332 98 <- Minus
arm_X 6566653..6567596 119..1062 100 <- Minus
arm_X 6567670..6567771 17..118 100   Minus

BO13843.pep Sequence

Translation from 16 to 1348

> BO13843.pep
MVDAARQMLDELMGRNRNLHPSEAGAKVNWEDPEFCQFYNVKFCPHDLFI
NTRADLGPCARIHDEEARHLYEDARPSQRKRQYEDEFLRFCNVMLHDVDR
KIQKGKQRLLLMQRDQPNVPAPLSRHQEQLANLTARINKLLSEAEEAGIR
GDVDQAQDLMTVCEELKEEKEQLVQQYEAHHKAISSISLTKSAEDELQHH
PRSSPVTNPSEESPTTPLPAATTLDEAPDAAPSSAQAAVTTTDDAGEAAG
AASEDKTSEKTDSKAAGWSHDAMPEKQMKVCEICGAFLIVGDAQQRIEDH
LMGKQHLGYSKLRNAVAEINEARQKEREQEERRRREGRVQRFHSYDSRRE
PRSEYRERSRDYVQNRQPSDRRHHHHKSHHSSHHSYSRSGGGGGGVGVGG
GGGGGSSRSNRSHHNHNHNHYRHDSRERHCRSRSRSRYASFLDH

BO13843.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:39:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG3198-PA 438 CG3198-PA 1..438 1..438 2330 100 Plus
CG7564-PD 420 CG7564-PD 12..178 3..177 238 32.6 Plus
CG7564-PB 420 CG7564-PB 12..178 3..177 238 32.6 Plus
CG7564-PC 420 CG7564-PC 12..178 3..177 238 32.6 Plus
CG7564-PA 420 CG7564-PA 12..178 3..177 238 32.6 Plus
CG7564-PD 420 CG7564-PD 150..361 244..438 158 25.2 Plus
CG7564-PB 420 CG7564-PB 150..361 244..438 158 25.2 Plus
CG7564-PC 420 CG7564-PC 150..361 244..438 158 25.2 Plus