Clone BO13845 Report

Search the DGRC for BO13845

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:138
Well:45
Vector:pDNR-Dual
Associated Gene/TranscriptmRpL9-RA
Protein status:BO13845.pep: validated full length
Sequenced Size:778

Clone Sequence Records

BO13845.3prime Sequence

776 bp (712 high quality bases) assembled on 2006-05-08

> BO13845.3prime
ATGGTCTAGAAAGCTTGCAGGGGTTTTTTCGGGTGAACATACATCCAGCA
GGGGCTCAGACTGGAGTTTCCAGTGCTCGAGTACGTAAGGCAGCCGTTCG
CTGGGATCTGTGCTCCAGTGGTGCAGACGACACTTGAGTCGCGCCTGTTC
CAGCTTGTTTATGGTCACAGTGCAGTAGAAGTCCTTGTTCTCCTTCTTCA
GGTCGGGTCCCTCGATGCGCTCCTTGGGCAGGGTAATGCACTCCTCGCGA
CAATAGAACCCAGTCTTGCGCAGCGAGGCCTTGATGTGCCAGGGCTCGAG
CACCCATGGCTCATCCTTGTTCATGACCACCGCCAGCACAATGGTCTCCA
GCATGTTGACCGTGCGCTGGGCGTAGGGGGAGCTGTGTTTAACAGTCGAT
TTTTCAGCCTCTGTCTTGGCGTACTTGGCCACATTCTCCGGCGTATTGTA
CGCGGCCAAACCCGGCAGCAGGAGCTTATTGTAGACAAAGTGCGGCTTCA
TTGACACCACGTCGCCCTTGTCGCCAACGCCCTCGACGAAGGTCTTTAGC
ACCACCTCGATGTTGGGCCGCTTTTTGACCAGCGTGTCGTCCACGAGCTC
GTAGATGAAGTTCTTGGCCCTCATCCGGCGGGGTTTCTCGTTGGTTTTGT
GCAGCGGCGGGTCATATTTGCGCTTCAGGACGAACGTGGTCCGCACTTGC
TGCTGCAGGCTGGTGGCCGATTTAAGCAAATTTAACGGCGTTACGTAGAT
GTTCTTCAACATGTCGACTGATAACT

BO13845.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:11:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG31478-PA 747 mRpL9-RA 1..744 762..19 3720 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:20:02
Subject Length Description Subject Range Query Range Score Percent Strand
mRpL9-RA 794 CG31478-RA 17..760 762..19 3720 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 12:19:57
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15330882..15331554 691..19 3365 100 Minus
3R 32079331 3R 15330754..15330825 762..691 360 100 Minus
Blast to na_te.dros performed on 2015-02-12 12:20:00 has no hits.

BO13845.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:13:36 Download gff for BO13845.3prime
Subject Subject Range Query Range Percent Splice Strand
mRpL9-PA 1..747 18..762 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:03:37 Download gff for BO13845.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31478-PA 1..747 18..762 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 01:13:35 Download gff for BO13845.3prime
Subject Subject Range Query Range Percent Splice Strand
mRpL9-RA 11..760 19..768 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:05:03 Download gff for BO13845.3prime
Subject Subject Range Query Range Percent Splice Strand
mRpL9-RA 11..760 19..768 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:05:03 Download gff for BO13845.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 15330748..15330825 691..768 96 -> Minus
3R 15330883..15331554 19..690 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 01:13:35 Download gff for BO13845.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11156470..11156547 691..768 96 -> Minus
arm_3R 11156605..11157276 19..690 100   Minus

BO13845.5prime Sequence

776 bp (760 high quality bases) assembled on 2006-05-08

> BO13845.5prime
GAAGTTATCAGTCGACATGTTGAAGAACATCTACGTAACGCCGTTAAATT
TGCTTAAATCGGCCACCAGCCTGCAGCAGCAAGTGCGGACCACGTTCGTC
CTGAAGCGCAAATATGACCCGCCGCTGCACAAAACCAACGAGAAACCCCG
CCGGATGAGGGCCAAGAACTTCATCTACGAGCTCGTGGACGACACGCTGG
TCAAAAAGCGGCCCAACATCGAGGTGGTGCTAAAGACCTTCGTCGAGGGC
GTTGGCGACAAGGGCGACGTGGTGTCAATGAAGCCGCACTTTGTCTACAA
TAAGCTCCTGCTGCCGGGTTTGGCCGCGTACAATACGCCGGAGAATGTGG
CCAAGTACGCCAAGACAGAGGCTGAAAAATCGACTGTTAAACACAGCTCC
CCCTACGCCCAGCGCACGGTCAACATGCTGGAGACCATTGTGCTGGCGGT
GGTCATGAACAAGGATGAGCCATGGGTGCTCGAGCCCTGGCACATCAAGG
CCTCGCTGCGCAAGACTGGGTTCTATTGTCGCGAGGAGTGCATTACCCTG
CCCAAGGAGCGCATCGAGGGACCCGACCTGAAGAAGGAGAACAAGGACTT
CTACTGCACTGTGACCATAAACAAGCTGGAACAGGCGCGACTCAAGTGTC
GTCTGCACCACTGGAGCACAGATCCCAGCGAACGGCTGCCTTACGTACTC
GAGCACTGGAAACTCCAGTCTGAGCCCCTGCTGGATGTATGTTCACCCGA
AAAAACCCCTGCAAGCTTTCTAGACC

BO13845.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:11:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG31478-PA 747 mRpL9-RA 1..744 17..760 3720 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 09:28:41
Subject Length Description Subject Range Query Range Score Percent Strand
mRpL9-RA 794 CG31478-RA 17..760 17..760 3720 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 09:28:34
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15330882..15331554 88..760 3365 100 Plus
3R 32079331 3R 15330754..15330825 17..88 360 100 Plus
Blast to na_te.dros performed on 2015-02-02 09:28:38 has no hits.

BO13845.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:13:37 Download gff for BO13845.5prime
Subject Subject Range Query Range Percent Splice Strand
mRpL9-PA 1..747 17..761 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:03:39 Download gff for BO13845.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31478-PA 1..747 17..761 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 03:54:14 Download gff for BO13845.5prime
Subject Subject Range Query Range Percent Splice Strand
mRpL9-RA 11..760 11..760 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:15:10 Download gff for BO13845.5prime
Subject Subject Range Query Range Percent Splice Strand
mRpL9-RA 11..760 11..760 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 12:15:10 Download gff for BO13845.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 15330748..15330825 11..88 96 -> Plus
3R 15330883..15331554 89..760 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 03:54:14 Download gff for BO13845.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11156470..11156547 11..88 96 -> Plus
arm_3R 11156605..11157276 89..760 100   Plus

BO13845.complete Sequence

778 bp assembled on 2006-10-11

GenBank Submission: FJ632947

> BO13845.complete
GAAGTTATCAGTCGACATGTTGAAGAACATCTACGTAACGCCGTTAAATT
TGCTTAAATCGGCCACCAGCCTGCAGCAGCAAGTGCGGACCACGTTCGTC
CTGAAGCGCAAATATGACCCGCCGCTGCACAAAACCAACGAGAAACCCCG
CCGGATGAGGGCCAAGAACTTCATCTACGAGCTCGTGGACGACACGCTGG
TCAAAAAGCGGCCCAACATCGAGGTGGTGCTAAAGACCTTCGTCGAGGGC
GTTGGCGACAAGGGCGACGTGGTGTCAATGAAGCCGCACTTTGTCTACAA
TAAGCTCCTGCTGCCGGGTTTGGCCGCGTACAATACGCCGGAGAATGTGG
CCAAGTACGCCAAGACAGAGGCTGAAAAATCGACTGTTAAACACAGCTCC
CCCTACGCCCAGCGCACGGTCAACATGCTGGAGACCATTGTGCTGGCGGT
GGTCATGAACAAGGATGAGCCATGGGTGCTCGAGCCCTGGCACATCAAGG
CCTCGCTGCGCAAGACTGGGTTCTATTGTCGCGAGGAGTGCATTACCCTG
CCCAAGGAGCGCATCGAGGGACCCGACCTGAAGAAGGAGAACAAGGACTT
CTACTGCACTGTGACCATAAACAAGCTGGAACAGGCGCGACTCAAGTGTC
GTCTGCACCACTGGAGCACAGATCCCAGCGAACGGCTGCCTTACGTACTC
GAGCACTGGAAACTCCAGTCTGAGCCCCTGCTGGATGTATGTTCACCCGA
AAAAACCCCTGCAAGCTTTCTAGACCAT

BO13845.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:50:03
Subject Length Description Subject Range Query Range Score Percent Strand
mRpL9-RA 747 CG31478-PA 1..744 17..760 3720 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:50:04
Subject Length Description Subject Range Query Range Score Percent Strand
mRpL9-RA 794 CG31478-RA 17..760 17..760 3720 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 12:50:00
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15330882..15331554 88..760 3365 100 Plus
3R 32079331 3R 15330754..15330825 17..88 360 100 Plus
Blast to na_te.dros performed on 2014-11-27 12:50:02 has no hits.

BO13845.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:44:24 Download gff for BO13845.complete
Subject Subject Range Query Range Percent Splice Strand
mRpL9-RA 1..747 17..761 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:58:19 Download gff for BO13845.complete
Subject Subject Range Query Range Percent Splice Strand
mRpL9-RA 9..758 11..760 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:46:20 Download gff for BO13845.complete
Subject Subject Range Query Range Percent Splice Strand
mRpL9-RA 22..760 22..762 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:44:24 Download gff for BO13845.complete
Subject Subject Range Query Range Percent Splice Strand
mRpL9-RA 9..758 11..760 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:05:42 Download gff for BO13845.complete
Subject Subject Range Query Range Percent Splice Strand
mRpL9-RA 22..760 22..762 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:05:42 Download gff for BO13845.complete
Subject Subject Range Query Range Percent Splice Strand
3R 15330759..15330825 22..88 100 -> Plus
3R 15330883..15331554 89..762 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:46:20 Download gff for BO13845.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11156481..11156547 22..88 100 -> Plus
arm_3R 11156605..11157276 89..762 99   Plus

BO13845.pep Sequence

Translation from 16 to 778

> BO13845.pep
MLKNIYVTPLNLLKSATSLQQQVRTTFVLKRKYDPPLHKTNEKPRRMRAK
NFIYELVDDTLVKKRPNIEVVLKTFVEGVGDKGDVVSMKPHFVYNKLLLP
GLAAYNTPENVAKYAKTEAEKSTVKHSSPYAQRTVNMLETIVLAVVMNKD
EPWVLEPWHIKASLRKTGFYCREECITLPKERIEGPDLKKENKDFYCTVT
INKLEQARLKCRLHHWSTDPSERLPYVLEHWKLQSEPLLDVCSPEKTPAS
FLDH

BO13845.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:39:14
Subject Length Description Subject Range Query Range Score Percent Strand
mRpL9-PA 248 CG31478-PA 1..248 1..248 1315 100 Plus