Clone Sequence Records
BO13845.3prime Sequence
776 bp (712 high quality bases) assembled on 2006-05-08
> BO13845.3prime
ATGGTCTAGAAAGCTTGCAGGGGTTTTTTCGGGTGAACATACATCCAGCA
GGGGCTCAGACTGGAGTTTCCAGTGCTCGAGTACGTAAGGCAGCCGTTCG
CTGGGATCTGTGCTCCAGTGGTGCAGACGACACTTGAGTCGCGCCTGTTC
CAGCTTGTTTATGGTCACAGTGCAGTAGAAGTCCTTGTTCTCCTTCTTCA
GGTCGGGTCCCTCGATGCGCTCCTTGGGCAGGGTAATGCACTCCTCGCGA
CAATAGAACCCAGTCTTGCGCAGCGAGGCCTTGATGTGCCAGGGCTCGAG
CACCCATGGCTCATCCTTGTTCATGACCACCGCCAGCACAATGGTCTCCA
GCATGTTGACCGTGCGCTGGGCGTAGGGGGAGCTGTGTTTAACAGTCGAT
TTTTCAGCCTCTGTCTTGGCGTACTTGGCCACATTCTCCGGCGTATTGTA
CGCGGCCAAACCCGGCAGCAGGAGCTTATTGTAGACAAAGTGCGGCTTCA
TTGACACCACGTCGCCCTTGTCGCCAACGCCCTCGACGAAGGTCTTTAGC
ACCACCTCGATGTTGGGCCGCTTTTTGACCAGCGTGTCGTCCACGAGCTC
GTAGATGAAGTTCTTGGCCCTCATCCGGCGGGGTTTCTCGTTGGTTTTGT
GCAGCGGCGGGTCATATTTGCGCTTCAGGACGAACGTGGTCCGCACTTGC
TGCTGCAGGCTGGTGGCCGATTTAAGCAAATTTAACGGCGTTACGTAGAT
GTTCTTCAACATGTCGACTGATAACT
BO13845.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:11:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31478-PA | 747 | mRpL9-RA | 1..744 | 762..19 | 3720 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:20:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mRpL9-RA | 794 | CG31478-RA | 17..760 | 762..19 | 3720 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 12:19:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 15330882..15331554 | 691..19 | 3365 | 100 | Minus |
3R | 32079331 | 3R | 15330754..15330825 | 762..691 | 360 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 12:20:00 has no hits.
BO13845.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:13:36 Download gff for
BO13845.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpL9-PA | 1..747 | 18..762 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:03:37 Download gff for
BO13845.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31478-PA | 1..747 | 18..762 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 01:13:35 Download gff for
BO13845.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpL9-RA | 11..760 | 19..768 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:05:03 Download gff for
BO13845.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpL9-RA | 11..760 | 19..768 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:05:03 Download gff for
BO13845.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 15330748..15330825 | 691..768 | 96 | -> | Minus |
3R | 15330883..15331554 | 19..690 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 01:13:35 Download gff for
BO13845.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 11156470..11156547 | 691..768 | 96 | -> | Minus |
arm_3R | 11156605..11157276 | 19..690 | 100 | | Minus |
BO13845.5prime Sequence
776 bp (760 high quality bases) assembled on 2006-05-08
> BO13845.5prime
GAAGTTATCAGTCGACATGTTGAAGAACATCTACGTAACGCCGTTAAATT
TGCTTAAATCGGCCACCAGCCTGCAGCAGCAAGTGCGGACCACGTTCGTC
CTGAAGCGCAAATATGACCCGCCGCTGCACAAAACCAACGAGAAACCCCG
CCGGATGAGGGCCAAGAACTTCATCTACGAGCTCGTGGACGACACGCTGG
TCAAAAAGCGGCCCAACATCGAGGTGGTGCTAAAGACCTTCGTCGAGGGC
GTTGGCGACAAGGGCGACGTGGTGTCAATGAAGCCGCACTTTGTCTACAA
TAAGCTCCTGCTGCCGGGTTTGGCCGCGTACAATACGCCGGAGAATGTGG
CCAAGTACGCCAAGACAGAGGCTGAAAAATCGACTGTTAAACACAGCTCC
CCCTACGCCCAGCGCACGGTCAACATGCTGGAGACCATTGTGCTGGCGGT
GGTCATGAACAAGGATGAGCCATGGGTGCTCGAGCCCTGGCACATCAAGG
CCTCGCTGCGCAAGACTGGGTTCTATTGTCGCGAGGAGTGCATTACCCTG
CCCAAGGAGCGCATCGAGGGACCCGACCTGAAGAAGGAGAACAAGGACTT
CTACTGCACTGTGACCATAAACAAGCTGGAACAGGCGCGACTCAAGTGTC
GTCTGCACCACTGGAGCACAGATCCCAGCGAACGGCTGCCTTACGTACTC
GAGCACTGGAAACTCCAGTCTGAGCCCCTGCTGGATGTATGTTCACCCGA
AAAAACCCCTGCAAGCTTTCTAGACC
BO13845.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:11:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31478-PA | 747 | mRpL9-RA | 1..744 | 17..760 | 3720 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 09:28:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mRpL9-RA | 794 | CG31478-RA | 17..760 | 17..760 | 3720 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 09:28:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 15330882..15331554 | 88..760 | 3365 | 100 | Plus |
3R | 32079331 | 3R | 15330754..15330825 | 17..88 | 360 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-02 09:28:38 has no hits.
BO13845.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:13:37 Download gff for
BO13845.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpL9-PA | 1..747 | 17..761 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:03:39 Download gff for
BO13845.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31478-PA | 1..747 | 17..761 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 03:54:14 Download gff for
BO13845.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpL9-RA | 11..760 | 11..760 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:15:10 Download gff for
BO13845.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpL9-RA | 11..760 | 11..760 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 12:15:10 Download gff for
BO13845.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 15330748..15330825 | 11..88 | 96 | -> | Plus |
3R | 15330883..15331554 | 89..760 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 03:54:14 Download gff for
BO13845.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 11156470..11156547 | 11..88 | 96 | -> | Plus |
arm_3R | 11156605..11157276 | 89..760 | 100 | | Plus |
BO13845.complete Sequence
778 bp assembled on 2006-10-11
GenBank Submission: FJ632947
> BO13845.complete
GAAGTTATCAGTCGACATGTTGAAGAACATCTACGTAACGCCGTTAAATT
TGCTTAAATCGGCCACCAGCCTGCAGCAGCAAGTGCGGACCACGTTCGTC
CTGAAGCGCAAATATGACCCGCCGCTGCACAAAACCAACGAGAAACCCCG
CCGGATGAGGGCCAAGAACTTCATCTACGAGCTCGTGGACGACACGCTGG
TCAAAAAGCGGCCCAACATCGAGGTGGTGCTAAAGACCTTCGTCGAGGGC
GTTGGCGACAAGGGCGACGTGGTGTCAATGAAGCCGCACTTTGTCTACAA
TAAGCTCCTGCTGCCGGGTTTGGCCGCGTACAATACGCCGGAGAATGTGG
CCAAGTACGCCAAGACAGAGGCTGAAAAATCGACTGTTAAACACAGCTCC
CCCTACGCCCAGCGCACGGTCAACATGCTGGAGACCATTGTGCTGGCGGT
GGTCATGAACAAGGATGAGCCATGGGTGCTCGAGCCCTGGCACATCAAGG
CCTCGCTGCGCAAGACTGGGTTCTATTGTCGCGAGGAGTGCATTACCCTG
CCCAAGGAGCGCATCGAGGGACCCGACCTGAAGAAGGAGAACAAGGACTT
CTACTGCACTGTGACCATAAACAAGCTGGAACAGGCGCGACTCAAGTGTC
GTCTGCACCACTGGAGCACAGATCCCAGCGAACGGCTGCCTTACGTACTC
GAGCACTGGAAACTCCAGTCTGAGCCCCTGCTGGATGTATGTTCACCCGA
AAAAACCCCTGCAAGCTTTCTAGACCAT
BO13845.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:50:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mRpL9-RA | 747 | CG31478-PA | 1..744 | 17..760 | 3720 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:50:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mRpL9-RA | 794 | CG31478-RA | 17..760 | 17..760 | 3720 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 12:50:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 15330882..15331554 | 88..760 | 3365 | 100 | Plus |
3R | 32079331 | 3R | 15330754..15330825 | 17..88 | 360 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 12:50:02 has no hits.
BO13845.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:44:24 Download gff for
BO13845.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpL9-RA | 1..747 | 17..761 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:58:19 Download gff for
BO13845.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpL9-RA | 9..758 | 11..760 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:46:20 Download gff for
BO13845.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpL9-RA | 22..760 | 22..762 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:44:24 Download gff for
BO13845.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpL9-RA | 9..758 | 11..760 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:05:42 Download gff for
BO13845.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpL9-RA | 22..760 | 22..762 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:05:42 Download gff for
BO13845.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 15330759..15330825 | 22..88 | 100 | -> | Plus |
3R | 15330883..15331554 | 89..762 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:46:20 Download gff for
BO13845.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 11156481..11156547 | 22..88 | 100 | -> | Plus |
arm_3R | 11156605..11157276 | 89..762 | 99 | | Plus |
BO13845.pep Sequence
Translation from 16 to 778
> BO13845.pep
MLKNIYVTPLNLLKSATSLQQQVRTTFVLKRKYDPPLHKTNEKPRRMRAK
NFIYELVDDTLVKKRPNIEVVLKTFVEGVGDKGDVVSMKPHFVYNKLLLP
GLAAYNTPENVAKYAKTEAEKSTVKHSSPYAQRTVNMLETIVLAVVMNKD
EPWVLEPWHIKASLRKTGFYCREECITLPKERIEGPDLKKENKDFYCTVT
INKLEQARLKCRLHHWSTDPSERLPYVLEHWKLQSEPLLDVCSPEKTPAS
FLDH
BO13845.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:39:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mRpL9-PA | 248 | CG31478-PA | 1..248 | 1..248 | 1315 | 100 | Plus |